data_4YJF
#
_model_server_result.job_id            DlQRDIblFZezwT0S4x7yig 
_model_server_result.datetime_utc      '2024-11-05 01:01:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yjf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4YJF 
#
_exptl.entry_id    4YJF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YJF 
_cell.length_a            68.844 
_cell.length_b            91.973 
_cell.length_c            110.178 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YJF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 G N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 103 n n 
PA O2A FAD sing 104 n n 
PA O5B FAD sing 105 n n 
PA O3P FAD sing 106 n n 
O2A HOA2 FAD sing 107 n n 
O5B C5B FAD sing 108 n n 
C5B C4B FAD sing 109 n n 
C5B H51A FAD sing 110 n n 
C5B H52A FAD sing 111 n n 
C4B O4B FAD sing 112 n n 
C4B C3B FAD sing 113 n n 
C4B H4B FAD sing 114 n n 
O4B C1B FAD sing 115 n n 
C3B O3B FAD sing 116 n n 
C3B C2B FAD sing 117 n n 
C3B H3B FAD sing 118 n n 
O3B HO3A FAD sing 119 n n 
C2B O2B FAD sing 120 n n 
C2B C1B FAD sing 121 n n 
C2B H2B FAD sing 122 n n 
O2B HO2A FAD sing 123 n n 
C1B N9A FAD sing 124 n n 
C1B H1B FAD sing 125 n n 
N9A C8A FAD sing 126 n y 
N9A C4A FAD sing 127 n y 
C8A N7A FAD doub 128 n y 
C8A H8A FAD sing 129 n n 
N7A C5A FAD sing 130 n y 
C5A C6A FAD sing 131 n y 
C5A C4A FAD doub 132 n y 
C6A N6A FAD sing 133 n n 
C6A N1A FAD doub 134 n y 
N6A H61A FAD sing 135 n n 
N6A H62A FAD sing 136 n n 
N1A C2A FAD sing 137 n y 
C2A N3A FAD doub 138 n y 
C2A H2A FAD sing 139 n n 
N3A C4A FAD sing 140 n y 
N1 C2 FAD sing 141 n n 
N1 C10 FAD doub 142 n n 
C2 O2 FAD doub 143 n n 
C2 N3 FAD sing 144 n n 
N3 C4 FAD sing 145 n n 
N3 HN3 FAD sing 146 n n 
C4 O4 FAD doub 147 n n 
C4 C4X FAD sing 148 n n 
C4X N5 FAD doub 149 n n 
C4X C10 FAD sing 150 n n 
N5 C5X FAD sing 151 n n 
C5X C6 FAD doub 152 n y 
C5X C9A FAD sing 153 n y 
C6 C7 FAD sing 154 n y 
C6 H6 FAD sing 155 n n 
C7 C7M FAD sing 156 n n 
C7 C8 FAD doub 157 n y 
C7M HM71 FAD sing 158 n n 
C7M HM72 FAD sing 159 n n 
C7M HM73 FAD sing 160 n n 
C8 C8M FAD sing 161 n n 
C8 C9 FAD sing 162 n y 
C8M HM81 FAD sing 163 n n 
C8M HM82 FAD sing 164 n n 
C8M HM83 FAD sing 165 n n 
C9 C9A FAD doub 166 n y 
C9 H9 FAD sing 167 n n 
C9A N10 FAD sing 168 n n 
N10 C10 FAD sing 169 n n 
N10 C1' FAD sing 170 n n 
C1' C2' FAD sing 171 n n 
C1' "H1'1" FAD sing 172 n n 
C1' "H1'2" FAD sing 173 n n 
C2' O2' FAD sing 174 n n 
C2' C3' FAD sing 175 n n 
C2' H2' FAD sing 176 n n 
O2' HO2' FAD sing 177 n n 
C3' O3' FAD sing 178 n n 
C3' C4' FAD sing 179 n n 
C3' H3' FAD sing 180 n n 
O3' HO3' FAD sing 181 n n 
C4' O4' FAD sing 182 n n 
C4' C5' FAD sing 183 n n 
C4' H4' FAD sing 184 n n 
O4' HO4' FAD sing 185 n n 
C5' O5' FAD sing 186 n n 
C5' "H5'1" FAD sing 187 n n 
C5' "H5'2" FAD sing 188 n n 
O5' P FAD sing 189 n n 
P O1P FAD doub 190 n n 
P O2P FAD sing 191 n n 
P O3P FAD sing 192 n n 
O2P HOP2 FAD sing 193 n n 
#
_atom_sites.entry_id                     4YJF 
_atom_sites.fract_transf_matrix[1][1]    0.014526 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009076 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FAD A 1 401 2 FAD FAD . 
D 4 SO4 A 1 402 7 SO4 SO4 . 
E 4 SO4 A 1 403 8 SO4 SO4 . 
F 5 98B A 1 404 2 98B 98B . 
G 3 FAD B 1 401 1 FAD FAD . 
H 4 SO4 B 1 402 5 SO4 SO4 . 
I 4 SO4 B 1 403 6 SO4 SO4 . 
J 5 98B B 1 404 1 98B 98B . 
K 6 HOH A 1 501 21 HOH HOH . 
K 6 HOH A 2 502 49 HOH HOH . 
K 6 HOH A 3 503 6 HOH HOH . 
K 6 HOH A 4 504 11 HOH HOH . 
K 6 HOH A 5 505 14 HOH HOH . 
K 6 HOH A 6 506 16 HOH HOH . 
K 6 HOH A 7 507 18 HOH HOH . 
K 6 HOH A 8 508 22 HOH HOH . 
K 6 HOH A 9 509 23 HOH HOH . 
K 6 HOH A 10 510 29 HOH HOH . 
K 6 HOH A 11 511 30 HOH HOH . 
K 6 HOH A 12 512 31 HOH HOH . 
K 6 HOH A 13 513 36 HOH HOH . 
K 6 HOH A 14 514 37 HOH HOH . 
K 6 HOH A 15 515 38 HOH HOH . 
K 6 HOH A 16 516 40 HOH HOH . 
K 6 HOH A 17 517 43 HOH HOH . 
K 6 HOH A 18 518 47 HOH HOH . 
K 6 HOH A 19 519 51 HOH HOH . 
K 6 HOH A 20 520 57 HOH HOH . 
K 6 HOH A 21 521 60 HOH HOH . 
K 6 HOH A 22 522 62 HOH HOH . 
K 6 HOH A 23 523 2 HOH HOH . 
K 6 HOH A 24 524 4 HOH HOH . 
K 6 HOH A 25 525 9 HOH HOH . 
L 6 HOH B 1 501 8 HOH HOH . 
L 6 HOH B 2 502 5 HOH HOH . 
L 6 HOH B 3 503 55 HOH HOH . 
L 6 HOH B 4 504 46 HOH HOH . 
L 6 HOH B 5 505 10 HOH HOH . 
L 6 HOH B 6 506 12 HOH HOH . 
L 6 HOH B 7 507 13 HOH HOH . 
L 6 HOH B 8 508 15 HOH HOH . 
L 6 HOH B 9 509 17 HOH HOH . 
L 6 HOH B 10 510 19 HOH HOH . 
L 6 HOH B 11 511 20 HOH HOH . 
L 6 HOH B 12 512 24 HOH HOH . 
L 6 HOH B 13 513 25 HOH HOH . 
L 6 HOH B 14 514 26 HOH HOH . 
L 6 HOH B 15 515 27 HOH HOH . 
L 6 HOH B 16 516 32 HOH HOH . 
L 6 HOH B 17 517 34 HOH HOH . 
L 6 HOH B 18 518 35 HOH HOH . 
L 6 HOH B 19 519 39 HOH HOH . 
L 6 HOH B 20 520 41 HOH HOH . 
L 6 HOH B 21 521 42 HOH HOH . 
L 6 HOH B 22 522 44 HOH HOH . 
L 6 HOH B 23 523 45 HOH HOH . 
L 6 HOH B 24 524 52 HOH HOH . 
L 6 HOH B 25 525 54 HOH HOH . 
L 6 HOH B 26 526 61 HOH HOH . 
L 6 HOH B 27 527 1 HOH HOH . 
L 6 HOH B 28 528 3 HOH HOH . 
L 6 HOH B 29 529 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 3 19.297 8.212 22.764 1 20.77 ? PA FAD 401 A 1 
HETATM 2 O O1A FAD . . . C 3 19.366 9.706 22.715 1 21.27 ? O1A FAD 401 A 1 
HETATM 3 O O2A FAD . . . C 3 20.546 7.35 22.753 1 18.67 ? O2A FAD 401 A 1 
HETATM 4 O O5B FAD . . . C 3 18.44 7.902 24.065 1 18.17 ? O5B FAD 401 A 1 
HETATM 5 C C5B FAD . . . C 3 18.129 6.56 24.384 1 19.75 ? C5B FAD 401 A 1 
HETATM 6 C C4B FAD . . . C 3 17.643 6.44 25.819 1 17.97 ? C4B FAD 401 A 1 
HETATM 7 O O4B FAD . . . C 3 17.296 5.078 26.111 1 19.94 ? O4B FAD 401 A 1 
HETATM 8 C C3B FAD . . . C 3 18.67 6.83 26.87 1 18.29 ? C3B FAD 401 A 1 
HETATM 9 O O3B FAD . . . C 3 18.021 7.582 27.914 1 16.78 ? O3B FAD 401 A 1 
HETATM 10 C C2B FAD . . . C 3 19.157 5.506 27.431 1 19.19 ? C2B FAD 401 A 1 
HETATM 11 O O2B FAD . . . C 3 19.606 5.584 28.779 1 19.71 ? O2B FAD 401 A 1 
HETATM 12 C C1B FAD . . . C 3 17.881 4.743 27.372 1 18.03 ? C1B FAD 401 A 1 
HETATM 13 N N9A FAD . . . C 3 18.031 3.298 27.45 1 20.47 ? N9A FAD 401 A 1 
HETATM 14 C C8A FAD . . . C 3 18.466 2.458 26.503 1 22.72 ? C8A FAD 401 A 1 
HETATM 15 N N7A FAD . . . C 3 18.399 1.171 26.946 1 23.72 ? N7A FAD 401 A 1 
HETATM 16 C C5A FAD . . . C 3 17.891 1.207 28.199 1 21.47 ? C5A FAD 401 A 1 
HETATM 17 C C6A FAD . . . C 3 17.521 0.239 29.245 1 21.41 ? C6A FAD 401 A 1 
HETATM 18 N N6A FAD . . . C 3 17.707 -1.071 29.032 1 23.11 ? N6A FAD 401 A 1 
HETATM 19 N N1A FAD . . . C 3 17.024 0.706 30.422 1 21.87 ? N1A FAD 401 A 1 
HETATM 20 C C2A FAD . . . C 3 16.833 2.013 30.631 1 21.38 ? C2A FAD 401 A 1 
HETATM 21 N N3A FAD . . . C 3 17.129 2.936 29.705 1 23.96 ? N3A FAD 401 A 1 
HETATM 22 C C4A FAD . . . C 3 17.641 2.604 28.509 1 21.71 ? C4A FAD 401 A 1 
HETATM 23 N N1 FAD . . . C 3 20.222 13.609 14.156 1 18.88 ? N1 FAD 401 A 1 
HETATM 24 C C2 FAD . . . C 3 19.701 14.735 13.647 1 23.61 ? C2 FAD 401 A 1 
HETATM 25 O O2 FAD . . . C 3 18.493 14.738 13.338 1 19.86 ? O2 FAD 401 A 1 
HETATM 26 N N3 FAD . . . C 3 20.419 15.85 13.432 1 26.92 ? N3 FAD 401 A 1 
HETATM 27 C C4 FAD . . . C 3 21.722 15.915 13.733 1 23.98 ? C4 FAD 401 A 1 
HETATM 28 O O4 FAD . . . C 3 22.375 16.964 13.579 1 22.87 ? O4 FAD 401 A 1 
HETATM 29 C C4X FAD . . . C 3 22.356 14.713 14.263 1 24.16 ? C4X FAD 401 A 1 
HETATM 30 N N5 FAD . . . C 3 23.655 14.728 14.552 1 24.57 ? N5 FAD 401 A 1 
HETATM 31 C C5X FAD . . . C 3 24.195 13.597 15.027 1 26.22 ? C5X FAD 401 A 1 
HETATM 32 C C6 FAD . . . C 3 25.552 13.636 15.332 1 30.08 ? C6 FAD 401 A 1 
HETATM 33 C C7 FAD . . . C 3 26.169 12.508 15.844 1 29.41 ? C7 FAD 401 A 1 
HETATM 34 C C7M FAD . . . C 3 27.633 12.525 16.171 1 28.33 ? C7M FAD 401 A 1 
HETATM 35 C C8 FAD . . . C 3 25.372 11.276 16.065 1 31.01 ? C8 FAD 401 A 1 
HETATM 36 C C8M FAD . . . C 3 26.045 10.049 16.612 1 32.78 ? C8M FAD 401 A 1 
HETATM 37 C C9 FAD . . . C 3 24.028 11.239 15.761 1 25.64 ? C9 FAD 401 A 1 
HETATM 38 C C9A FAD . . . C 3 23.393 12.357 15.25 1 24.76 ? C9A FAD 401 A 1 
HETATM 39 N N10 FAD . . . C 3 21.994 12.336 15.006 1 25.95 ? N10 FAD 401 A 1 
HETATM 40 C C10 FAD . . . C 3 21.507 13.525 14.468 1 21.04 ? C10 FAD 401 A 1 
HETATM 41 C C1' FAD . . . C 3 21.063 11.16 15.085 1 28.05 ? C1' FAD 401 A 1 
HETATM 42 C C2' FAD . . . C 3 20.431 10.416 16.302 1 31.19 ? C2' FAD 401 A 1 
HETATM 43 O O2' FAD . . . C 3 19.115 9.849 16.092 1 22.09 ? O2' FAD 401 A 1 
HETATM 44 C C3' FAD . . . C 3 20.207 11.24 17.495 1 32.05 ? C3' FAD 401 A 1 
HETATM 45 O O3' FAD . . . C 3 21.551 11.509 17.974 1 29.3 ? O3' FAD 401 A 1 
HETATM 46 C C4' FAD . . . C 3 19.152 10.653 18.503 1 21.57 ? C4' FAD 401 A 1 
HETATM 47 O O4' FAD . . . C 3 19.686 11.048 19.731 1 20.81 ? O4' FAD 401 A 1 
HETATM 48 C C5' FAD . . . C 3 18.686 9.191 18.745 1 22.27 ? C5' FAD 401 A 1 
HETATM 49 O O5' FAD . . . C 3 17.602 9.274 19.725 1 19.98 ? O5' FAD 401 A 1 
HETATM 50 P P FAD . . . C 3 17.084 8.225 20.873 1 18.85 ? P FAD 401 A 1 
HETATM 51 O O1P FAD . . . C 3 16.424 7.074 20.162 1 18.34 ? O1P FAD 401 A 1 
HETATM 52 O O2P FAD . . . C 3 16.301 8.956 21.927 1 20.87 ? O2P FAD 401 A 1 
HETATM 53 O O3P FAD . . . C 3 18.387 7.596 21.568 1 17.78 ? O3P FAD 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#