data_4YJG # _model_server_result.job_id GTWNbfwUPoNo4AWgpeU69g _model_server_result.datetime_utc '2024-11-13 08:04:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yjg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 4YJG # _exptl.entry_id 4YJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.233 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-4-phenylbutan-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YJG _cell.length_a 68.59 _cell.length_b 92.114 _cell.length_c 110.274 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 G N N # _chem_comp.formula 'C10 H15 N' _chem_comp.formula_weight 149.233 _chem_comp.id 4DD _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-4-phenylbutan-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 4DD sing 1 n n N C1 4DD sing 2 n n C1 C2 4DD sing 3 n n C2 C3 4DD sing 4 n n C3 C4 4DD sing 5 n n C4 C9 4DD doub 6 n y C4 C5 4DD sing 7 n y C9 C8 4DD sing 8 n y C5 C6 4DD doub 9 n y C8 C7 4DD doub 10 n y C6 C7 4DD sing 11 n y C1 H1 4DD sing 12 n n C2 H2 4DD sing 13 n n C2 H3 4DD sing 14 n n C3 H4 4DD sing 15 n n C3 H5 4DD sing 16 n n N H6 4DD sing 17 n n N H7 4DD sing 18 n n C H9 4DD sing 19 n n C H10 4DD sing 20 n n C H11 4DD sing 21 n n C5 H12 4DD sing 22 n n C6 H13 4DD sing 23 n n C7 H14 4DD sing 24 n n C8 H15 4DD sing 25 n n C9 H16 4DD sing 26 n n # _atom_sites.entry_id 4YJG _atom_sites.fract_transf_matrix[1][1] 0.014579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4DD A 1 401 1 4DD 13B . D 4 FAD A 1 402 2 FAD FAD . E 5 SO4 A 1 403 7 SO4 SO4 . F 5 SO4 A 1 404 8 SO4 SO4 . G 3 4DD B 1 401 2 4DD 13B . H 4 FAD B 1 402 1 FAD FAD . I 5 SO4 B 1 403 5 SO4 SO4 . J 5 SO4 B 1 404 6 SO4 SO4 . K 6 HOH A 1 501 49 HOH HOH . K 6 HOH A 2 502 17 HOH HOH . K 6 HOH A 3 503 21 HOH HOH . K 6 HOH A 4 504 43 HOH HOH . K 6 HOH A 5 505 9 HOH HOH . K 6 HOH A 6 506 11 HOH HOH . K 6 HOH A 7 507 12 HOH HOH . K 6 HOH A 8 508 16 HOH HOH . K 6 HOH A 9 509 22 HOH HOH . K 6 HOH A 10 510 25 HOH HOH . K 6 HOH A 11 511 26 HOH HOH . K 6 HOH A 12 512 27 HOH HOH . K 6 HOH A 13 513 29 HOH HOH . K 6 HOH A 14 514 34 HOH HOH . K 6 HOH A 15 515 37 HOH HOH . K 6 HOH A 16 516 41 HOH HOH . K 6 HOH A 17 517 42 HOH HOH . K 6 HOH A 18 518 44 HOH HOH . K 6 HOH A 19 519 50 HOH HOH . K 6 HOH A 20 520 51 HOH HOH . K 6 HOH A 21 521 53 HOH HOH . K 6 HOH A 22 522 54 HOH HOH . K 6 HOH A 23 523 58 HOH HOH . K 6 HOH A 24 524 59 HOH HOH . L 6 HOH B 1 501 47 HOH HOH . L 6 HOH B 2 502 33 HOH HOH . L 6 HOH B 3 503 48 HOH HOH . L 6 HOH B 4 504 56 HOH HOH . L 6 HOH B 5 505 15 HOH HOH . L 6 HOH B 6 506 10 HOH HOH . L 6 HOH B 7 507 13 HOH HOH . L 6 HOH B 8 508 14 HOH HOH . L 6 HOH B 9 509 18 HOH HOH . L 6 HOH B 10 510 19 HOH HOH . L 6 HOH B 11 511 20 HOH HOH . L 6 HOH B 12 512 23 HOH HOH . L 6 HOH B 13 513 24 HOH HOH . L 6 HOH B 14 514 28 HOH HOH . L 6 HOH B 15 515 30 HOH HOH . L 6 HOH B 16 516 31 HOH HOH . L 6 HOH B 17 517 32 HOH HOH . L 6 HOH B 18 518 35 HOH HOH . L 6 HOH B 19 519 36 HOH HOH . L 6 HOH B 20 520 38 HOH HOH . L 6 HOH B 21 521 39 HOH HOH . L 6 HOH B 22 522 40 HOH HOH . L 6 HOH B 23 523 45 HOH HOH . L 6 HOH B 24 524 46 HOH HOH . L 6 HOH B 25 525 52 HOH HOH . L 6 HOH B 26 526 55 HOH HOH . L 6 HOH B 27 527 57 HOH HOH . L 6 HOH B 28 528 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4DD . . . G 3 24.11 48.994 7.658 1 49.81 ? C1 4DD 401 B 1 HETATM 2 C C2 4DD . . . G 3 23.705 50.333 8.291 1 49.77 ? C2 4DD 401 B 1 HETATM 3 C C3 4DD . . . G 3 23.322 50.085 9.751 1 53.39 ? C3 4DD 401 B 1 HETATM 4 N N 4DD . . . G 3 24.719 49.186 6.363 1 58.78 ? N 4DD 401 B 1 HETATM 5 C C 4DD . . . G 3 22.945 48.026 7.506 1 45.76 ? C 4DD 401 B 1 HETATM 6 C C4 4DD . . . G 3 23.106 51.327 10.587 1 46.42 ? C4 4DD 401 B 1 HETATM 7 C C5 4DD . . . G 3 23.482 52.591 10.147 1 42.37 ? C5 4DD 401 B 1 HETATM 8 C C6 4DD . . . G 3 23.246 53.698 10.976 1 44.74 ? C6 4DD 401 B 1 HETATM 9 C C7 4DD . . . G 3 22.638 53.534 12.232 1 40.89 ? C7 4DD 401 B 1 HETATM 10 C C8 4DD . . . G 3 22.273 52.265 12.669 1 36.18 ? C8 4DD 401 B 1 HETATM 11 C C9 4DD . . . G 3 22.512 51.168 11.848 1 39.82 ? C9 4DD 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #