data_4YJG # _model_server_result.job_id eyAoU11l2ZlFtjY-nuMytA _model_server_result.datetime_utc '2024-11-13 07:56:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yjg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4YJG # _exptl.entry_id 4YJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YJG _cell.length_a 68.59 _cell.length_b 92.114 _cell.length_c 110.274 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 H N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 109 n n PA O2A FAD sing 110 n n PA O5B FAD sing 111 n n PA O3P FAD sing 112 n n O2A HOA2 FAD sing 113 n n O5B C5B FAD sing 114 n n C5B C4B FAD sing 115 n n C5B H51A FAD sing 116 n n C5B H52A FAD sing 117 n n C4B O4B FAD sing 118 n n C4B C3B FAD sing 119 n n C4B H4B FAD sing 120 n n O4B C1B FAD sing 121 n n C3B O3B FAD sing 122 n n C3B C2B FAD sing 123 n n C3B H3B FAD sing 124 n n O3B HO3A FAD sing 125 n n C2B O2B FAD sing 126 n n C2B C1B FAD sing 127 n n C2B H2B FAD sing 128 n n O2B HO2A FAD sing 129 n n C1B N9A FAD sing 130 n n C1B H1B FAD sing 131 n n N9A C8A FAD sing 132 n y N9A C4A FAD sing 133 n y C8A N7A FAD doub 134 n y C8A H8A FAD sing 135 n n N7A C5A FAD sing 136 n y C5A C6A FAD sing 137 n y C5A C4A FAD doub 138 n y C6A N6A FAD sing 139 n n C6A N1A FAD doub 140 n y N6A H61A FAD sing 141 n n N6A H62A FAD sing 142 n n N1A C2A FAD sing 143 n y C2A N3A FAD doub 144 n y C2A H2A FAD sing 145 n n N3A C4A FAD sing 146 n y N1 C2 FAD sing 147 n n N1 C10 FAD doub 148 n n C2 O2 FAD doub 149 n n C2 N3 FAD sing 150 n n N3 C4 FAD sing 151 n n N3 HN3 FAD sing 152 n n C4 O4 FAD doub 153 n n C4 C4X FAD sing 154 n n C4X N5 FAD doub 155 n n C4X C10 FAD sing 156 n n N5 C5X FAD sing 157 n n C5X C6 FAD doub 158 n y C5X C9A FAD sing 159 n y C6 C7 FAD sing 160 n y C6 H6 FAD sing 161 n n C7 C7M FAD sing 162 n n C7 C8 FAD doub 163 n y C7M HM71 FAD sing 164 n n C7M HM72 FAD sing 165 n n C7M HM73 FAD sing 166 n n C8 C8M FAD sing 167 n n C8 C9 FAD sing 168 n y C8M HM81 FAD sing 169 n n C8M HM82 FAD sing 170 n n C8M HM83 FAD sing 171 n n C9 C9A FAD doub 172 n y C9 H9 FAD sing 173 n n C9A N10 FAD sing 174 n n N10 C10 FAD sing 175 n n N10 C1' FAD sing 176 n n C1' C2' FAD sing 177 n n C1' "H1'1" FAD sing 178 n n C1' "H1'2" FAD sing 179 n n C2' O2' FAD sing 180 n n C2' C3' FAD sing 181 n n C2' H2' FAD sing 182 n n O2' HO2' FAD sing 183 n n C3' O3' FAD sing 184 n n C3' C4' FAD sing 185 n n C3' H3' FAD sing 186 n n O3' HO3' FAD sing 187 n n C4' O4' FAD sing 188 n n C4' C5' FAD sing 189 n n C4' H4' FAD sing 190 n n O4' HO4' FAD sing 191 n n C5' O5' FAD sing 192 n n C5' "H5'1" FAD sing 193 n n C5' "H5'2" FAD sing 194 n n O5' P FAD sing 195 n n P O1P FAD doub 196 n n P O2P FAD sing 197 n n P O3P FAD sing 198 n n O2P HOP2 FAD sing 199 n n # _atom_sites.entry_id 4YJG _atom_sites.fract_transf_matrix[1][1] 0.014579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4DD A 1 401 1 4DD 13B . D 4 FAD A 1 402 2 FAD FAD . E 5 SO4 A 1 403 7 SO4 SO4 . F 5 SO4 A 1 404 8 SO4 SO4 . G 3 4DD B 1 401 2 4DD 13B . H 4 FAD B 1 402 1 FAD FAD . I 5 SO4 B 1 403 5 SO4 SO4 . J 5 SO4 B 1 404 6 SO4 SO4 . K 6 HOH A 1 501 49 HOH HOH . K 6 HOH A 2 502 17 HOH HOH . K 6 HOH A 3 503 21 HOH HOH . K 6 HOH A 4 504 43 HOH HOH . K 6 HOH A 5 505 9 HOH HOH . K 6 HOH A 6 506 11 HOH HOH . K 6 HOH A 7 507 12 HOH HOH . K 6 HOH A 8 508 16 HOH HOH . K 6 HOH A 9 509 22 HOH HOH . K 6 HOH A 10 510 25 HOH HOH . K 6 HOH A 11 511 26 HOH HOH . K 6 HOH A 12 512 27 HOH HOH . K 6 HOH A 13 513 29 HOH HOH . K 6 HOH A 14 514 34 HOH HOH . K 6 HOH A 15 515 37 HOH HOH . K 6 HOH A 16 516 41 HOH HOH . K 6 HOH A 17 517 42 HOH HOH . K 6 HOH A 18 518 44 HOH HOH . K 6 HOH A 19 519 50 HOH HOH . K 6 HOH A 20 520 51 HOH HOH . K 6 HOH A 21 521 53 HOH HOH . K 6 HOH A 22 522 54 HOH HOH . K 6 HOH A 23 523 58 HOH HOH . K 6 HOH A 24 524 59 HOH HOH . L 6 HOH B 1 501 47 HOH HOH . L 6 HOH B 2 502 33 HOH HOH . L 6 HOH B 3 503 48 HOH HOH . L 6 HOH B 4 504 56 HOH HOH . L 6 HOH B 5 505 15 HOH HOH . L 6 HOH B 6 506 10 HOH HOH . L 6 HOH B 7 507 13 HOH HOH . L 6 HOH B 8 508 14 HOH HOH . L 6 HOH B 9 509 18 HOH HOH . L 6 HOH B 10 510 19 HOH HOH . L 6 HOH B 11 511 20 HOH HOH . L 6 HOH B 12 512 23 HOH HOH . L 6 HOH B 13 513 24 HOH HOH . L 6 HOH B 14 514 28 HOH HOH . L 6 HOH B 15 515 30 HOH HOH . L 6 HOH B 16 516 31 HOH HOH . L 6 HOH B 17 517 32 HOH HOH . L 6 HOH B 18 518 35 HOH HOH . L 6 HOH B 19 519 36 HOH HOH . L 6 HOH B 20 520 38 HOH HOH . L 6 HOH B 21 521 39 HOH HOH . L 6 HOH B 22 522 40 HOH HOH . L 6 HOH B 23 523 45 HOH HOH . L 6 HOH B 24 524 46 HOH HOH . L 6 HOH B 25 525 52 HOH HOH . L 6 HOH B 26 526 55 HOH HOH . L 6 HOH B 27 527 57 HOH HOH . L 6 HOH B 28 528 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 4 19.22 8.219 22.871 1 24.16 ? PA FAD 402 A 1 HETATM 2 O O1A FAD . . . D 4 19.377 9.694 22.797 1 23.6 ? O1A FAD 402 A 1 HETATM 3 O O2A FAD . . . D 4 20.431 7.352 22.839 1 25.13 ? O2A FAD 402 A 1 HETATM 4 O O5B FAD . . . D 4 18.363 7.922 24.222 1 25.86 ? O5B FAD 402 A 1 HETATM 5 C C5B FAD . . . D 4 18.228 6.551 24.598 1 28.42 ? C5B FAD 402 A 1 HETATM 6 C C4B FAD . . . D 4 17.627 6.401 25.989 1 28.14 ? C4B FAD 402 A 1 HETATM 7 O O4B FAD . . . D 4 17.337 5.023 26.231 1 25.42 ? O4B FAD 402 A 1 HETATM 8 C C3B FAD . . . D 4 18.564 6.841 27.104 1 28.79 ? C3B FAD 402 A 1 HETATM 9 O O3B FAD . . . D 4 17.8 7.564 28.094 1 26.78 ? O3B FAD 402 A 1 HETATM 10 C C2B FAD . . . D 4 19.095 5.52 27.656 1 26.51 ? C2B FAD 402 A 1 HETATM 11 O O2B FAD . . . D 4 19.539 5.667 29.004 1 30.84 ? O2B FAD 402 A 1 HETATM 12 C C1B FAD . . . D 4 17.835 4.696 27.522 1 26.3 ? C1B FAD 402 A 1 HETATM 13 N N9A FAD . . . D 4 17.954 3.249 27.626 1 25.72 ? N9A FAD 402 A 1 HETATM 14 C C8A FAD . . . D 4 18.419 2.411 26.684 1 29.15 ? C8A FAD 402 A 1 HETATM 15 N N7A FAD . . . D 4 18.372 1.123 27.124 1 26.77 ? N7A FAD 402 A 1 HETATM 16 C C5A FAD . . . D 4 17.802 1.152 28.348 1 24.52 ? C5A FAD 402 A 1 HETATM 17 C C6A FAD . . . D 4 17.434 0.173 29.374 1 27.32 ? C6A FAD 402 A 1 HETATM 18 N N6A FAD . . . D 4 17.655 -1.141 29.149 1 32.85 ? N6A FAD 402 A 1 HETATM 19 N N1A FAD . . . D 4 16.88 0.617 30.525 1 33.87 ? N1A FAD 402 A 1 HETATM 20 C C2A FAD . . . D 4 16.658 1.919 30.759 1 31.47 ? C2A FAD 402 A 1 HETATM 21 N N3A FAD . . . D 4 16.979 2.858 29.869 1 31.17 ? N3A FAD 402 A 1 HETATM 22 C C4A FAD . . . D 4 17.538 2.55 28.674 1 26.74 ? C4A FAD 402 A 1 HETATM 23 N N1 FAD . . . D 4 20.335 13.564 14.398 1 29.35 ? N1 FAD 402 A 1 HETATM 24 C C2 FAD . . . D 4 19.778 14.681 13.889 1 29.78 ? C2 FAD 402 A 1 HETATM 25 O O2 FAD . . . D 4 18.563 14.689 13.61 1 34.69 ? O2 FAD 402 A 1 HETATM 26 N N3 FAD . . . D 4 20.479 15.801 13.664 1 34.78 ? N3 FAD 402 A 1 HETATM 27 C C4 FAD . . . D 4 21.801 15.895 13.904 1 29.74 ? C4 FAD 402 A 1 HETATM 28 O O4 FAD . . . D 4 22.418 16.97 13.707 1 26.3 ? O4 FAD 402 A 1 HETATM 29 C C4X FAD . . . D 4 22.483 14.706 14.435 1 26.55 ? C4X FAD 402 A 1 HETATM 30 N N5 FAD . . . D 4 23.79 14.698 14.699 1 31.51 ? N5 FAD 402 A 1 HETATM 31 C C5X FAD . . . D 4 24.392 13.586 15.196 1 34.02 ? C5X FAD 402 A 1 HETATM 32 C C6 FAD . . . D 4 25.756 13.606 15.477 1 35.05 ? C6 FAD 402 A 1 HETATM 33 C C7 FAD . . . D 4 26.376 12.476 15.982 1 40.14 ? C7 FAD 402 A 1 HETATM 34 C C7M FAD . . . D 4 27.856 12.519 16.261 1 44.1 ? C7M FAD 402 A 1 HETATM 35 C C8 FAD . . . D 4 25.573 11.257 16.25 1 36.71 ? C8 FAD 402 A 1 HETATM 36 C C8M FAD . . . D 4 26.185 10.003 16.799 1 47.13 ? C8M FAD 402 A 1 HETATM 37 C C9 FAD . . . D 4 24.219 11.24 15.967 1 38.04 ? C9 FAD 402 A 1 HETATM 38 C C9A FAD . . . D 4 23.599 12.362 15.448 1 31.71 ? C9A FAD 402 A 1 HETATM 39 N N10 FAD . . . D 4 22.227 12.358 15.175 1 30.01 ? N10 FAD 402 A 1 HETATM 40 C C10 FAD . . . D 4 21.645 13.524 14.688 1 29.27 ? C10 FAD 402 A 1 HETATM 41 C C1' FAD . . . D 4 21.372 11.198 15.426 1 31.31 ? C1' FAD 402 A 1 HETATM 42 C C2' FAD . . . D 4 20.706 11.411 16.8 1 30.76 ? C2' FAD 402 A 1 HETATM 43 O O2' FAD . . . D 4 21.716 11.669 17.819 1 29.83 ? O2' FAD 402 A 1 HETATM 44 C C3' FAD . . . D 4 19.882 10.196 17.204 1 27.44 ? C3' FAD 402 A 1 HETATM 45 O O3' FAD . . . D 4 19.046 9.777 16.129 1 31.29 ? O3' FAD 402 A 1 HETATM 46 C C4' FAD . . . D 4 19.022 10.428 18.437 1 27.4 ? C4' FAD 402 A 1 HETATM 47 O O4' FAD . . . D 4 19.781 10.999 19.509 1 27.94 ? O4' FAD 402 A 1 HETATM 48 C C5' FAD . . . D 4 18.446 9.117 18.949 1 27.9 ? C5' FAD 402 A 1 HETATM 49 O O5' FAD . . . D 4 17.661 9.415 20.1 1 30.26 ? O5' FAD 402 A 1 HETATM 50 P P FAD . . . D 4 17.022 8.275 21.031 1 25.85 ? P FAD 402 A 1 HETATM 51 O O1P FAD . . . D 4 16.44 7.241 20.088 1 31.76 ? O1P FAD 402 A 1 HETATM 52 O O2P FAD . . . D 4 16.197 8.973 22.062 1 26.29 ? O2P FAD 402 A 1 HETATM 53 O O3P FAD . . . D 4 18.26 7.585 21.745 1 25.68 ? O3P FAD 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #