data_4YJH # _model_server_result.job_id dT7IQTlRa7XJgukB9zypeg _model_server_result.datetime_utc '2024-11-26 10:32:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yjh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4YJH # _exptl.entry_id 4YJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.217 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-phenylpyrrolidine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YJH _cell.length_a 68.281 _cell.length_b 91.202 _cell.length_c 110.007 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # _chem_comp.formula 'C10 H13 N' _chem_comp.formula_weight 147.217 _chem_comp.id 96B _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-phenylpyrrolidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C3 96B sing 1 n n C C1 96B sing 2 n n C3 N 96B sing 3 n n C1 C2 96B sing 4 n n N C2 96B sing 5 n n C2 C4 96B sing 6 n n C4 C5 96B doub 7 n y C4 C9 96B sing 8 n y C5 C6 96B sing 9 n y C9 C8 96B doub 10 n y C6 C7 96B doub 11 n y C8 C7 96B sing 12 n y N H1 96B sing 13 n n C3 H3 96B sing 14 n n C3 H4 96B sing 15 n n C H5 96B sing 16 n n C H6 96B sing 17 n n C1 H7 96B sing 18 n n C1 H8 96B sing 19 n n C2 H9 96B sing 20 n n C9 H10 96B sing 21 n n C5 H11 96B sing 22 n n C6 H12 96B sing 23 n n C7 H13 96B sing 24 n n C8 H14 96B sing 25 n n # _atom_sites.entry_id 4YJH _atom_sites.fract_transf_matrix[1][1] 0.014645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 96B A 1 401 1 96B 96B . D 4 FAD A 1 402 2 FAD FAD . E 5 SO4 A 1 403 6 SO4 SO4 . F 3 96B B 1 401 2 96B 96B . G 4 FAD B 1 402 1 FAD FAD . H 5 SO4 B 1 403 3 SO4 SO4 . I 5 SO4 B 1 404 4 SO4 SO4 . J 6 HOH A 1 501 1 HOH HOH . J 6 HOH A 2 502 4 HOH HOH . J 6 HOH A 3 503 5 HOH HOH . J 6 HOH A 4 504 8 HOH HOH . J 6 HOH A 5 505 11 HOH HOH . J 6 HOH A 6 506 12 HOH HOH . J 6 HOH A 7 507 15 HOH HOH . K 6 HOH B 1 501 14 HOH HOH . K 6 HOH B 2 502 2 HOH HOH . K 6 HOH B 3 503 3 HOH HOH . K 6 HOH B 4 504 6 HOH HOH . K 6 HOH B 5 505 7 HOH HOH . K 6 HOH B 6 506 9 HOH HOH . K 6 HOH B 7 507 10 HOH HOH . K 6 HOH B 8 508 13 HOH HOH . K 6 HOH B 9 509 16 HOH HOH . K 6 HOH B 10 510 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 96B . . . C 3 -22.727 -14.635 10.821 1 67.77 ? N 96B 401 A 1 HETATM 2 C C3 96B . . . C 3 -22.299 -15.955 10.302 1 66.82 ? C3 96B 401 A 1 HETATM 3 C C 96B . . . C 3 -23.562 -16.803 10.126 1 69.73 ? C 96B 401 A 1 HETATM 4 C C1 96B . . . C 3 -24.743 -15.904 10.5 1 68.22 ? C1 96B 401 A 1 HETATM 5 C C2 96B . . . C 3 -24.096 -14.832 11.352 1 58.5 ? C2 96B 401 A 1 HETATM 6 C C4 96B . . . C 3 -24.885 -13.6 11.584 1 53.94 ? C4 96B 401 A 1 HETATM 7 C C9 96B . . . C 3 -24.245 -12.377 11.796 1 57.12 ? C9 96B 401 A 1 HETATM 8 C C5 96B . . . C 3 -26.266 -13.68 11.733 1 53.55 ? C5 96B 401 A 1 HETATM 9 C C6 96B . . . C 3 -27.007 -12.539 12.025 1 50.91 ? C6 96B 401 A 1 HETATM 10 C C7 96B . . . C 3 -26.369 -11.318 12.203 1 51.7 ? C7 96B 401 A 1 HETATM 11 C C8 96B . . . C 3 -24.985 -11.234 12.088 1 55.15 ? C8 96B 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #