data_4YJH
#
_model_server_result.job_id            IDDG5Xmr5A2_J_pItL-CJg 
_model_server_result.datetime_utc      '2024-11-26 10:40:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yjh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4YJH 
#
_exptl.entry_id    4YJH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YJH 
_cell.length_a            68.281 
_cell.length_b            91.202 
_cell.length_c            110.007 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YJH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 G N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 108 n n 
PA O2A FAD sing 109 n n 
PA O5B FAD sing 110 n n 
PA O3P FAD sing 111 n n 
O2A HOA2 FAD sing 112 n n 
O5B C5B FAD sing 113 n n 
C5B C4B FAD sing 114 n n 
C5B H51A FAD sing 115 n n 
C5B H52A FAD sing 116 n n 
C4B O4B FAD sing 117 n n 
C4B C3B FAD sing 118 n n 
C4B H4B FAD sing 119 n n 
O4B C1B FAD sing 120 n n 
C3B O3B FAD sing 121 n n 
C3B C2B FAD sing 122 n n 
C3B H3B FAD sing 123 n n 
O3B HO3A FAD sing 124 n n 
C2B O2B FAD sing 125 n n 
C2B C1B FAD sing 126 n n 
C2B H2B FAD sing 127 n n 
O2B HO2A FAD sing 128 n n 
C1B N9A FAD sing 129 n n 
C1B H1B FAD sing 130 n n 
N9A C8A FAD sing 131 n y 
N9A C4A FAD sing 132 n y 
C8A N7A FAD doub 133 n y 
C8A H8A FAD sing 134 n n 
N7A C5A FAD sing 135 n y 
C5A C6A FAD sing 136 n y 
C5A C4A FAD doub 137 n y 
C6A N6A FAD sing 138 n n 
C6A N1A FAD doub 139 n y 
N6A H61A FAD sing 140 n n 
N6A H62A FAD sing 141 n n 
N1A C2A FAD sing 142 n y 
C2A N3A FAD doub 143 n y 
C2A H2A FAD sing 144 n n 
N3A C4A FAD sing 145 n y 
N1 C2 FAD sing 146 n n 
N1 C10 FAD doub 147 n n 
C2 O2 FAD doub 148 n n 
C2 N3 FAD sing 149 n n 
N3 C4 FAD sing 150 n n 
N3 HN3 FAD sing 151 n n 
C4 O4 FAD doub 152 n n 
C4 C4X FAD sing 153 n n 
C4X N5 FAD doub 154 n n 
C4X C10 FAD sing 155 n n 
N5 C5X FAD sing 156 n n 
C5X C6 FAD doub 157 n y 
C5X C9A FAD sing 158 n y 
C6 C7 FAD sing 159 n y 
C6 H6 FAD sing 160 n n 
C7 C7M FAD sing 161 n n 
C7 C8 FAD doub 162 n y 
C7M HM71 FAD sing 163 n n 
C7M HM72 FAD sing 164 n n 
C7M HM73 FAD sing 165 n n 
C8 C8M FAD sing 166 n n 
C8 C9 FAD sing 167 n y 
C8M HM81 FAD sing 168 n n 
C8M HM82 FAD sing 169 n n 
C8M HM83 FAD sing 170 n n 
C9 C9A FAD doub 171 n y 
C9 H9 FAD sing 172 n n 
C9A N10 FAD sing 173 n n 
N10 C10 FAD sing 174 n n 
N10 C1' FAD sing 175 n n 
C1' C2' FAD sing 176 n n 
C1' "H1'1" FAD sing 177 n n 
C1' "H1'2" FAD sing 178 n n 
C2' O2' FAD sing 179 n n 
C2' C3' FAD sing 180 n n 
C2' H2' FAD sing 181 n n 
O2' HO2' FAD sing 182 n n 
C3' O3' FAD sing 183 n n 
C3' C4' FAD sing 184 n n 
C3' H3' FAD sing 185 n n 
O3' HO3' FAD sing 186 n n 
C4' O4' FAD sing 187 n n 
C4' C5' FAD sing 188 n n 
C4' H4' FAD sing 189 n n 
O4' HO4' FAD sing 190 n n 
C5' O5' FAD sing 191 n n 
C5' "H5'1" FAD sing 192 n n 
C5' "H5'2" FAD sing 193 n n 
O5' P FAD sing 194 n n 
P O1P FAD doub 195 n n 
P O2P FAD sing 196 n n 
P O3P FAD sing 197 n n 
O2P HOP2 FAD sing 198 n n 
#
_atom_sites.entry_id                     4YJH 
_atom_sites.fract_transf_matrix[1][1]    0.014645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00909 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 96B A 1 401 1 96B 96B . 
D 4 FAD A 1 402 2 FAD FAD . 
E 5 SO4 A 1 403 6 SO4 SO4 . 
F 3 96B B 1 401 2 96B 96B . 
G 4 FAD B 1 402 1 FAD FAD . 
H 5 SO4 B 1 403 3 SO4 SO4 . 
I 5 SO4 B 1 404 4 SO4 SO4 . 
J 6 HOH A 1 501 1 HOH HOH . 
J 6 HOH A 2 502 4 HOH HOH . 
J 6 HOH A 3 503 5 HOH HOH . 
J 6 HOH A 4 504 8 HOH HOH . 
J 6 HOH A 5 505 11 HOH HOH . 
J 6 HOH A 6 506 12 HOH HOH . 
J 6 HOH A 7 507 15 HOH HOH . 
K 6 HOH B 1 501 14 HOH HOH . 
K 6 HOH B 2 502 2 HOH HOH . 
K 6 HOH B 3 503 3 HOH HOH . 
K 6 HOH B 4 504 6 HOH HOH . 
K 6 HOH B 5 505 7 HOH HOH . 
K 6 HOH B 6 506 9 HOH HOH . 
K 6 HOH B 7 507 10 HOH HOH . 
K 6 HOH B 8 508 13 HOH HOH . 
K 6 HOH B 9 509 16 HOH HOH . 
K 6 HOH B 10 510 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 -19.189 -8.068 22.824 1 42.38 ? PA FAD 402 A 1 
HETATM 2 O O1A FAD . . . D 4 -20.415 -7.179 22.791 1 38.75 ? O1A FAD 402 A 1 
HETATM 3 O O2A FAD . . . D 4 -19.345 -9.57 22.705 1 35.14 ? O2A FAD 402 A 1 
HETATM 4 O O5B FAD . . . D 4 -18.318 -7.761 24.151 1 39.52 ? O5B FAD 402 A 1 
HETATM 5 C C5B FAD . . . D 4 -18.23 -6.394 24.522 1 44.66 ? C5B FAD 402 A 1 
HETATM 6 C C4B FAD . . . D 4 -17.597 -6.21 25.901 1 43.76 ? C4B FAD 402 A 1 
HETATM 7 O O4B FAD . . . D 4 -17.286 -4.816 26.141 1 44.36 ? O4B FAD 402 A 1 
HETATM 8 C C3B FAD . . . D 4 -18.546 -6.619 27.003 1 38.45 ? C3B FAD 402 A 1 
HETATM 9 O O3B FAD . . . D 4 -17.779 -7.365 27.964 1 42.33 ? O3B FAD 402 A 1 
HETATM 10 C C2B FAD . . . D 4 -19.019 -5.293 27.58 1 35.62 ? C2B FAD 402 A 1 
HETATM 11 O O2B FAD . . . D 4 -19.392 -5.423 28.943 1 41.28 ? O2B FAD 402 A 1 
HETATM 12 C C1B FAD . . . D 4 -17.767 -4.473 27.433 1 39 ? C1B FAD 402 A 1 
HETATM 13 N N9A FAD . . . D 4 -17.862 -3.002 27.599 1 43.09 ? N9A FAD 402 A 1 
HETATM 14 C C8A FAD . . . D 4 -18.268 -2.104 26.696 1 43.43 ? C8A FAD 402 A 1 
HETATM 15 N N7A FAD . . . D 4 -18.173 -0.845 27.203 1 43.92 ? N7A FAD 402 A 1 
HETATM 16 C C5A FAD . . . D 4 -17.679 -0.939 28.45 1 36.67 ? C5A FAD 402 A 1 
HETATM 17 C C6A FAD . . . D 4 -17.336 -0.008 29.545 1 38.81 ? C6A FAD 402 A 1 
HETATM 18 N N6A FAD . . . D 4 -17.491 1.327 29.407 1 36.95 ? N6A FAD 402 A 1 
HETATM 19 N N1A FAD . . . D 4 -16.844 -0.53 30.689 1 51.18 ? N1A FAD 402 A 1 
HETATM 20 C C2A FAD . . . D 4 -16.66 -1.854 30.862 1 42.87 ? C2A FAD 402 A 1 
HETATM 21 N N3A FAD . . . D 4 -16.958 -2.746 29.91 1 41.22 ? N3A FAD 402 A 1 
HETATM 22 C C4A FAD . . . D 4 -17.466 -2.358 28.704 1 42.59 ? C4A FAD 402 A 1 
HETATM 23 N N1 FAD . . . D 4 -20.234 -13.425 14.323 1 37.17 ? N1 FAD 402 A 1 
HETATM 24 C C2 FAD . . . D 4 -19.724 -14.571 13.818 1 48.25 ? C2 FAD 402 A 1 
HETATM 25 O O2 FAD . . . D 4 -18.5 -14.62 13.548 1 53.48 ? O2 FAD 402 A 1 
HETATM 26 N N3 FAD . . . D 4 -20.466 -15.67 13.577 1 49.13 ? N3 FAD 402 A 1 
HETATM 27 C C4 FAD . . . D 4 -21.783 -15.732 13.824 1 48.06 ? C4 FAD 402 A 1 
HETATM 28 O O4 FAD . . . D 4 -22.465 -16.777 13.608 1 46.07 ? O4 FAD 402 A 1 
HETATM 29 C C4X FAD . . . D 4 -22.409 -14.516 14.371 1 43.79 ? C4X FAD 402 A 1 
HETATM 30 N N5 FAD . . . D 4 -23.717 -14.492 14.648 1 36.34 ? N5 FAD 402 A 1 
HETATM 31 C C5X FAD . . . D 4 -24.28 -13.371 15.149 1 49.69 ? C5X FAD 402 A 1 
HETATM 32 C C6 FAD . . . D 4 -25.645 -13.387 15.423 1 51.43 ? C6 FAD 402 A 1 
HETATM 33 C C7 FAD . . . D 4 -26.258 -12.266 15.955 1 53.11 ? C7 FAD 402 A 1 
HETATM 34 C C7M FAD . . . D 4 -27.739 -12.286 16.239 1 60.35 ? C7M FAD 402 A 1 
HETATM 35 C C8 FAD . . . D 4 -25.455 -11.055 16.228 1 41.22 ? C8 FAD 402 A 1 
HETATM 36 C C8M FAD . . . D 4 -26.132 -9.85 16.79 1 48.7 ? C8M FAD 402 A 1 
HETATM 37 C C9 FAD . . . D 4 -24.094 -11.027 15.954 1 47.25 ? C9 FAD 402 A 1 
HETATM 38 C C9A FAD . . . D 4 -23.465 -12.148 15.417 1 44.29 ? C9A FAD 402 A 1 
HETATM 39 N N10 FAD . . . D 4 -22.082 -12.164 15.135 1 39.41 ? N10 FAD 402 A 1 
HETATM 40 C C10 FAD . . . D 4 -21.536 -13.341 14.614 1 43.14 ? C10 FAD 402 A 1 
HETATM 41 C C1' FAD . . . D 4 -21.195 -11.022 15.389 1 43.14 ? C1' FAD 402 A 1 
HETATM 42 C C2' FAD . . . D 4 -20.512 -11.174 16.76 1 41.51 ? C2' FAD 402 A 1 
HETATM 43 O O2' FAD . . . D 4 -21.484 -11.491 17.775 1 39.77 ? O2' FAD 402 A 1 
HETATM 44 C C3' FAD . . . D 4 -19.747 -9.909 17.143 1 42.37 ? C3' FAD 402 A 1 
HETATM 45 O O3' FAD . . . D 4 -18.914 -9.474 16.05 1 39.05 ? O3' FAD 402 A 1 
HETATM 46 C C4' FAD . . . D 4 -18.884 -10.116 18.383 1 39.33 ? C4' FAD 402 A 1 
HETATM 47 O O4' FAD . . . D 4 -19.626 -10.766 19.408 1 35.15 ? O4' FAD 402 A 1 
HETATM 48 C C5' FAD . . . D 4 -18.394 -8.796 18.965 1 39.11 ? C5' FAD 402 A 1 
HETATM 49 O O5' FAD . . . D 4 -17.495 -9.135 20.017 1 43.78 ? O5' FAD 402 A 1 
HETATM 50 P P FAD . . . D 4 -16.913 -8.052 21.034 1 34.4 ? P FAD 402 A 1 
HETATM 51 O O1P FAD . . . D 4 -16.3 -6.927 20.252 1 39.03 ? O1P FAD 402 A 1 
HETATM 52 O O2P FAD . . . D 4 -16.122 -8.815 22.05 1 35.44 ? O2P FAD 402 A 1 
HETATM 53 O O3P FAD . . . D 4 -18.252 -7.439 21.664 1 42.56 ? O3P FAD 402 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#