data_4YJH # _model_server_result.job_id su7oSAK2EO2W4pRiSJmyAA _model_server_result.datetime_utc '2024-11-26 10:28:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yjh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 4YJH # _exptl.entry_id 4YJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YJH _cell.length_a 68.281 _cell.length_b 91.202 _cell.length_c 110.007 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 G N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 108 n n PA O2A FAD sing 109 n n PA O5B FAD sing 110 n n PA O3P FAD sing 111 n n O2A HOA2 FAD sing 112 n n O5B C5B FAD sing 113 n n C5B C4B FAD sing 114 n n C5B H51A FAD sing 115 n n C5B H52A FAD sing 116 n n C4B O4B FAD sing 117 n n C4B C3B FAD sing 118 n n C4B H4B FAD sing 119 n n O4B C1B FAD sing 120 n n C3B O3B FAD sing 121 n n C3B C2B FAD sing 122 n n C3B H3B FAD sing 123 n n O3B HO3A FAD sing 124 n n C2B O2B FAD sing 125 n n C2B C1B FAD sing 126 n n C2B H2B FAD sing 127 n n O2B HO2A FAD sing 128 n n C1B N9A FAD sing 129 n n C1B H1B FAD sing 130 n n N9A C8A FAD sing 131 n y N9A C4A FAD sing 132 n y C8A N7A FAD doub 133 n y C8A H8A FAD sing 134 n n N7A C5A FAD sing 135 n y C5A C6A FAD sing 136 n y C5A C4A FAD doub 137 n y C6A N6A FAD sing 138 n n C6A N1A FAD doub 139 n y N6A H61A FAD sing 140 n n N6A H62A FAD sing 141 n n N1A C2A FAD sing 142 n y C2A N3A FAD doub 143 n y C2A H2A FAD sing 144 n n N3A C4A FAD sing 145 n y N1 C2 FAD sing 146 n n N1 C10 FAD doub 147 n n C2 O2 FAD doub 148 n n C2 N3 FAD sing 149 n n N3 C4 FAD sing 150 n n N3 HN3 FAD sing 151 n n C4 O4 FAD doub 152 n n C4 C4X FAD sing 153 n n C4X N5 FAD doub 154 n n C4X C10 FAD sing 155 n n N5 C5X FAD sing 156 n n C5X C6 FAD doub 157 n y C5X C9A FAD sing 158 n y C6 C7 FAD sing 159 n y C6 H6 FAD sing 160 n n C7 C7M FAD sing 161 n n C7 C8 FAD doub 162 n y C7M HM71 FAD sing 163 n n C7M HM72 FAD sing 164 n n C7M HM73 FAD sing 165 n n C8 C8M FAD sing 166 n n C8 C9 FAD sing 167 n y C8M HM81 FAD sing 168 n n C8M HM82 FAD sing 169 n n C8M HM83 FAD sing 170 n n C9 C9A FAD doub 171 n y C9 H9 FAD sing 172 n n C9A N10 FAD sing 173 n n N10 C10 FAD sing 174 n n N10 C1' FAD sing 175 n n C1' C2' FAD sing 176 n n C1' "H1'1" FAD sing 177 n n C1' "H1'2" FAD sing 178 n n C2' O2' FAD sing 179 n n C2' C3' FAD sing 180 n n C2' H2' FAD sing 181 n n O2' HO2' FAD sing 182 n n C3' O3' FAD sing 183 n n C3' C4' FAD sing 184 n n C3' H3' FAD sing 185 n n O3' HO3' FAD sing 186 n n C4' O4' FAD sing 187 n n C4' C5' FAD sing 188 n n C4' H4' FAD sing 189 n n O4' HO4' FAD sing 190 n n C5' O5' FAD sing 191 n n C5' "H5'1" FAD sing 192 n n C5' "H5'2" FAD sing 193 n n O5' P FAD sing 194 n n P O1P FAD doub 195 n n P O2P FAD sing 196 n n P O3P FAD sing 197 n n O2P HOP2 FAD sing 198 n n # _atom_sites.entry_id 4YJH _atom_sites.fract_transf_matrix[1][1] 0.014645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 96B A 1 401 1 96B 96B . D 4 FAD A 1 402 2 FAD FAD . E 5 SO4 A 1 403 6 SO4 SO4 . F 3 96B B 1 401 2 96B 96B . G 4 FAD B 1 402 1 FAD FAD . H 5 SO4 B 1 403 3 SO4 SO4 . I 5 SO4 B 1 404 4 SO4 SO4 . J 6 HOH A 1 501 1 HOH HOH . J 6 HOH A 2 502 4 HOH HOH . J 6 HOH A 3 503 5 HOH HOH . J 6 HOH A 4 504 8 HOH HOH . J 6 HOH A 5 505 11 HOH HOH . J 6 HOH A 6 506 12 HOH HOH . J 6 HOH A 7 507 15 HOH HOH . K 6 HOH B 1 501 14 HOH HOH . K 6 HOH B 2 502 2 HOH HOH . K 6 HOH B 3 503 3 HOH HOH . K 6 HOH B 4 504 6 HOH HOH . K 6 HOH B 5 505 7 HOH HOH . K 6 HOH B 6 506 9 HOH HOH . K 6 HOH B 7 507 10 HOH HOH . K 6 HOH B 8 508 13 HOH HOH . K 6 HOH B 9 509 16 HOH HOH . K 6 HOH B 10 510 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 4 -35.112 -57.359 11.671 1 34.91 ? PA FAD 402 B 1 HETATM 2 O O1A FAD . . . G 4 -34.341 -58.244 12.645 1 41.77 ? O1A FAD 402 B 1 HETATM 3 O O2A FAD . . . G 4 -34.944 -55.859 11.846 1 42.53 ? O2A FAD 402 B 1 HETATM 4 O O5B FAD . . . G 4 -36.648 -57.752 11.692 1 31.31 ? O5B FAD 402 B 1 HETATM 5 C C5B FAD . . . G 4 -36.946 -59.141 11.613 1 38.42 ? C5B FAD 402 B 1 HETATM 6 C C4B FAD . . . G 4 -38.389 -59.346 12.037 1 40.25 ? C4B FAD 402 B 1 HETATM 7 O O4B FAD . . . G 4 -38.764 -60.692 11.808 1 47.65 ? O4B FAD 402 B 1 HETATM 8 C C3B FAD . . . G 4 -38.578 -59.101 13.51 1 38.93 ? C3B FAD 402 B 1 HETATM 9 O O3B FAD . . . G 4 -39.742 -58.285 13.656 1 46.15 ? O3B FAD 402 B 1 HETATM 10 C C2B FAD . . . G 4 -38.811 -60.472 14.105 1 43.78 ? C2B FAD 402 B 1 HETATM 11 O O2B FAD . . . G 4 -39.676 -60.424 15.244 1 43.25 ? O2B FAD 402 B 1 HETATM 12 C C1B FAD . . . G 4 -39.475 -61.161 12.938 1 41.16 ? C1B FAD 402 B 1 HETATM 13 N N9A FAD . . . G 4 -39.474 -62.634 12.947 1 43.23 ? N9A FAD 402 B 1 HETATM 14 C C8A FAD . . . G 4 -38.466 -63.448 12.582 1 46.68 ? C8A FAD 402 B 1 HETATM 15 N N7A FAD . . . G 4 -38.859 -64.752 12.685 1 48.91 ? N7A FAD 402 B 1 HETATM 16 C C5A FAD . . . G 4 -40.126 -64.765 13.12 1 39.32 ? C5A FAD 402 B 1 HETATM 17 C C6A FAD . . . G 4 -41.135 -65.785 13.461 1 42.31 ? C6A FAD 402 B 1 HETATM 18 N N6A FAD . . . G 4 -40.839 -67.089 13.333 1 39.18 ? N6A FAD 402 B 1 HETATM 19 N N1A FAD . . . G 4 -42.353 -65.383 13.89 1 38.92 ? N1A FAD 402 B 1 HETATM 20 C C2A FAD . . . G 4 -42.649 -64.082 14.004 1 46.01 ? C2A FAD 402 B 1 HETATM 21 N N3A FAD . . . G 4 -41.777 -63.096 13.716 1 48.09 ? N3A FAD 402 B 1 HETATM 22 C C4A FAD . . . G 4 -40.529 -63.368 13.279 1 46.05 ? C4A FAD 402 B 1 HETATM 23 N N1 FAD . . . G 4 -28.098 -51.008 7.826 1 41.54 ? N1 FAD 402 B 1 HETATM 24 C C2 FAD . . . G 4 -28.039 -49.802 7.219 1 48.2 ? C2 FAD 402 B 1 HETATM 25 O O2 FAD . . . G 4 -28.577 -49.687 6.085 1 39.24 ? O2 FAD 402 B 1 HETATM 26 N N3 FAD . . . G 4 -27.421 -48.738 7.795 1 44.64 ? N3 FAD 402 B 1 HETATM 27 C C4 FAD . . . G 4 -26.835 -48.809 8.993 1 36.12 ? C4 FAD 402 B 1 HETATM 28 O O4 FAD . . . G 4 -26.285 -47.829 9.525 1 44.42 ? O4 FAD 402 B 1 HETATM 29 C C4X FAD . . . G 4 -26.854 -50.076 9.709 1 38.4 ? C4X FAD 402 B 1 HETATM 30 N N5 FAD . . . G 4 -26.257 -50.218 10.915 1 40.69 ? N5 FAD 402 B 1 HETATM 31 C C5X FAD . . . G 4 -26.306 -51.42 11.534 1 41.5 ? C5X FAD 402 B 1 HETATM 32 C C6 FAD . . . G 4 -25.715 -51.568 12.774 1 50.09 ? C6 FAD 402 B 1 HETATM 33 C C7 FAD . . . G 4 -25.751 -52.792 13.432 1 53.5 ? C7 FAD 402 B 1 HETATM 34 C C7M FAD . . . G 4 -25.098 -52.942 14.781 1 61.13 ? C7M FAD 402 B 1 HETATM 35 C C8 FAD . . . G 4 -26.418 -53.95 12.802 1 50.74 ? C8 FAD 402 B 1 HETATM 36 C C8M FAD . . . G 4 -26.468 -55.276 13.503 1 53.97 ? C8M FAD 402 B 1 HETATM 37 C C9 FAD . . . G 4 -27.02 -53.805 11.559 1 55.56 ? C9 FAD 402 B 1 HETATM 38 C C9A FAD . . . G 4 -26.996 -52.581 10.91 1 42.27 ? C9A FAD 402 B 1 HETATM 39 N N10 FAD . . . G 4 -27.601 -52.436 9.658 1 43.63 ? N10 FAD 402 B 1 HETATM 40 C C10 FAD . . . G 4 -27.546 -51.19 9.037 1 41.45 ? C10 FAD 402 B 1 HETATM 41 C C1' FAD . . . G 4 -28.267 -53.531 8.959 1 47.82 ? C1' FAD 402 B 1 HETATM 42 C C2' FAD . . . G 4 -29.759 -53.473 9.228 1 39.69 ? C2' FAD 402 B 1 HETATM 43 O O2' FAD . . . G 4 -29.867 -53.159 10.615 1 37.08 ? O2' FAD 402 B 1 HETATM 44 C C3' FAD . . . G 4 -30.375 -54.832 8.89 1 39.07 ? C3' FAD 402 B 1 HETATM 45 O O3' FAD . . . G 4 -30.013 -55.253 7.565 1 34.02 ? O3' FAD 402 B 1 HETATM 46 C C4' FAD . . . G 4 -31.877 -54.773 8.994 1 42.02 ? C4' FAD 402 B 1 HETATM 47 O O4' FAD . . . G 4 -32.192 -54.086 10.207 1 38.5 ? O4' FAD 402 B 1 HETATM 48 C C5' FAD . . . G 4 -32.545 -56.159 8.937 1 39.27 ? C5' FAD 402 B 1 HETATM 49 O O5' FAD . . . G 4 -33.951 -55.894 8.841 1 39.37 ? O5' FAD 402 B 1 HETATM 50 P P FAD . . . G 4 -35.068 -57.035 8.821 1 36.98 ? P FAD 402 B 1 HETATM 51 O O1P FAD . . . G 4 -34.686 -57.93 7.669 1 38.93 ? O1P FAD 402 B 1 HETATM 52 O O2P FAD . . . G 4 -36.424 -56.367 8.885 1 33.37 ? O2P FAD 402 B 1 HETATM 53 O O3P FAD . . . G 4 -34.825 -57.86 10.165 1 37.3 ? O3P FAD 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #