data_4YJO # _model_server_result.job_id L9xJCXaF4MFuupjr042qNA _model_server_result.datetime_utc '2024-12-01 23:03:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 4YJO # _exptl.entry_id 4YJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.24 _cell.angle_gamma 90 _cell.entry_id 4YJO _cell.length_a 39.936 _cell.length_b 84.821 _cell.length_c 40.412 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 182 n n C1 C2 GOL sing 183 n n C1 H11 GOL sing 184 n n C1 H12 GOL sing 185 n n O1 HO1 GOL sing 186 n n C2 O2 GOL sing 187 n n C2 C3 GOL sing 188 n n C2 H2 GOL sing 189 n n O2 HO2 GOL sing 190 n n C3 O3 GOL sing 191 n n C3 H31 GOL sing 192 n n C3 H32 GOL sing 193 n n O3 HO3 GOL sing 194 n n # _atom_sites.entry_id 4YJO _atom_sites.fract_transf_matrix[1][1] 0.02504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004072 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4DF A 1 701 1 4DF UNL . C 3 GOL A 1 702 1 GOL GOL . D 4 HOH A 1 801 230 HOH HOH . D 4 HOH A 2 802 208 HOH HOH . D 4 HOH A 3 803 184 HOH HOH . D 4 HOH A 4 804 6 HOH HOH . D 4 HOH A 5 805 12 HOH HOH . D 4 HOH A 6 806 91 HOH HOH . D 4 HOH A 7 807 210 HOH HOH . D 4 HOH A 8 808 120 HOH HOH . D 4 HOH A 9 809 69 HOH HOH . D 4 HOH A 10 810 232 HOH HOH . D 4 HOH A 11 811 113 HOH HOH . D 4 HOH A 12 812 175 HOH HOH . D 4 HOH A 13 813 143 HOH HOH . D 4 HOH A 14 814 38 HOH HOH . D 4 HOH A 15 815 61 HOH HOH . D 4 HOH A 16 816 82 HOH HOH . D 4 HOH A 17 817 171 HOH HOH . D 4 HOH A 18 818 125 HOH HOH . D 4 HOH A 19 819 54 HOH HOH . D 4 HOH A 20 820 186 HOH HOH . D 4 HOH A 21 821 27 HOH HOH . D 4 HOH A 22 822 78 HOH HOH . D 4 HOH A 23 823 93 HOH HOH . D 4 HOH A 24 824 118 HOH HOH . D 4 HOH A 25 825 128 HOH HOH . D 4 HOH A 26 826 51 HOH HOH . D 4 HOH A 27 827 68 HOH HOH . D 4 HOH A 28 828 59 HOH HOH . D 4 HOH A 29 829 199 HOH HOH . D 4 HOH A 30 830 137 HOH HOH . D 4 HOH A 31 831 8 HOH HOH . D 4 HOH A 32 832 74 HOH HOH . D 4 HOH A 33 833 14 HOH HOH . D 4 HOH A 34 834 4 HOH HOH . D 4 HOH A 35 835 189 HOH HOH . D 4 HOH A 36 836 170 HOH HOH . D 4 HOH A 37 837 107 HOH HOH . D 4 HOH A 38 838 2 HOH HOH . D 4 HOH A 39 839 80 HOH HOH . D 4 HOH A 40 840 207 HOH HOH . D 4 HOH A 41 841 177 HOH HOH . D 4 HOH A 42 842 150 HOH HOH . D 4 HOH A 43 843 99 HOH HOH . D 4 HOH A 44 844 84 HOH HOH . D 4 HOH A 45 845 206 HOH HOH . D 4 HOH A 46 846 79 HOH HOH . D 4 HOH A 47 847 5 HOH HOH . D 4 HOH A 48 848 28 HOH HOH . D 4 HOH A 49 849 156 HOH HOH . D 4 HOH A 50 850 122 HOH HOH . D 4 HOH A 51 851 39 HOH HOH . D 4 HOH A 52 852 216 HOH HOH . D 4 HOH A 53 853 141 HOH HOH . D 4 HOH A 54 854 43 HOH HOH . D 4 HOH A 55 855 180 HOH HOH . D 4 HOH A 56 856 142 HOH HOH . D 4 HOH A 57 857 46 HOH HOH . D 4 HOH A 58 858 149 HOH HOH . D 4 HOH A 59 859 95 HOH HOH . D 4 HOH A 60 860 73 HOH HOH . D 4 HOH A 61 861 214 HOH HOH . D 4 HOH A 62 862 190 HOH HOH . D 4 HOH A 63 863 83 HOH HOH . D 4 HOH A 64 864 224 HOH HOH . D 4 HOH A 65 865 153 HOH HOH . D 4 HOH A 66 866 195 HOH HOH . D 4 HOH A 67 867 197 HOH HOH . D 4 HOH A 68 868 229 HOH HOH . D 4 HOH A 69 869 64 HOH HOH . D 4 HOH A 70 870 129 HOH HOH . D 4 HOH A 71 871 196 HOH HOH . D 4 HOH A 72 872 215 HOH HOH . D 4 HOH A 73 873 121 HOH HOH . D 4 HOH A 74 874 140 HOH HOH . D 4 HOH A 75 875 151 HOH HOH . D 4 HOH A 76 876 218 HOH HOH . D 4 HOH A 77 877 135 HOH HOH . D 4 HOH A 78 878 226 HOH HOH . D 4 HOH A 79 879 88 HOH HOH . D 4 HOH A 80 880 217 HOH HOH . D 4 HOH A 81 881 172 HOH HOH . D 4 HOH A 82 882 200 HOH HOH . D 4 HOH A 83 883 223 HOH HOH . D 4 HOH A 84 884 161 HOH HOH . D 4 HOH A 85 885 152 HOH HOH . D 4 HOH A 86 886 158 HOH HOH . D 4 HOH A 87 887 179 HOH HOH . D 4 HOH A 88 888 198 HOH HOH . D 4 HOH A 89 889 163 HOH HOH . D 4 HOH A 90 890 228 HOH HOH . D 4 HOH A 91 891 235 HOH HOH . D 4 HOH A 92 892 182 HOH HOH . D 4 HOH A 93 893 212 HOH HOH . D 4 HOH A 94 894 187 HOH HOH . D 4 HOH A 95 895 225 HOH HOH . D 4 HOH A 96 896 181 HOH HOH . D 4 HOH A 97 897 157 HOH HOH . D 4 HOH A 98 898 191 HOH HOH . D 4 HOH A 99 899 213 HOH HOH . D 4 HOH A 100 900 154 HOH HOH . D 4 HOH A 101 901 101 HOH HOH . D 4 HOH A 102 902 96 HOH HOH . D 4 HOH A 103 903 86 HOH HOH . D 4 HOH A 104 904 201 HOH HOH . D 4 HOH A 105 905 202 HOH HOH . D 4 HOH A 106 906 1 HOH HOH . D 4 HOH A 107 907 3 HOH HOH . D 4 HOH A 108 908 7 HOH HOH . D 4 HOH A 109 909 9 HOH HOH . D 4 HOH A 110 910 10 HOH HOH . D 4 HOH A 111 911 11 HOH HOH . D 4 HOH A 112 912 13 HOH HOH . D 4 HOH A 113 913 15 HOH HOH . D 4 HOH A 114 914 16 HOH HOH . D 4 HOH A 115 915 17 HOH HOH . D 4 HOH A 116 916 18 HOH HOH . D 4 HOH A 117 917 19 HOH HOH . D 4 HOH A 118 918 20 HOH HOH . D 4 HOH A 119 919 21 HOH HOH . D 4 HOH A 120 920 22 HOH HOH . D 4 HOH A 121 921 23 HOH HOH . D 4 HOH A 122 922 24 HOH HOH . D 4 HOH A 123 923 25 HOH HOH . D 4 HOH A 124 924 26 HOH HOH . D 4 HOH A 125 925 29 HOH HOH . D 4 HOH A 126 926 30 HOH HOH . D 4 HOH A 127 927 31 HOH HOH . D 4 HOH A 128 928 32 HOH HOH . D 4 HOH A 129 929 33 HOH HOH . D 4 HOH A 130 930 34 HOH HOH . D 4 HOH A 131 931 35 HOH HOH . D 4 HOH A 132 932 36 HOH HOH . D 4 HOH A 133 933 37 HOH HOH . D 4 HOH A 134 934 40 HOH HOH . D 4 HOH A 135 935 41 HOH HOH . D 4 HOH A 136 936 42 HOH HOH . D 4 HOH A 137 937 44 HOH HOH . D 4 HOH A 138 938 45 HOH HOH . D 4 HOH A 139 939 47 HOH HOH . D 4 HOH A 140 940 48 HOH HOH . D 4 HOH A 141 941 49 HOH HOH . D 4 HOH A 142 942 50 HOH HOH . D 4 HOH A 143 943 52 HOH HOH . D 4 HOH A 144 944 53 HOH HOH . D 4 HOH A 145 945 55 HOH HOH . D 4 HOH A 146 946 56 HOH HOH . D 4 HOH A 147 947 57 HOH HOH . D 4 HOH A 148 948 58 HOH HOH . D 4 HOH A 149 949 60 HOH HOH . D 4 HOH A 150 950 62 HOH HOH . D 4 HOH A 151 951 63 HOH HOH . D 4 HOH A 152 952 65 HOH HOH . D 4 HOH A 153 953 66 HOH HOH . D 4 HOH A 154 954 67 HOH HOH . D 4 HOH A 155 955 70 HOH HOH . D 4 HOH A 156 956 71 HOH HOH . D 4 HOH A 157 957 72 HOH HOH . D 4 HOH A 158 958 75 HOH HOH . D 4 HOH A 159 959 76 HOH HOH . D 4 HOH A 160 960 77 HOH HOH . D 4 HOH A 161 961 81 HOH HOH . D 4 HOH A 162 962 85 HOH HOH . D 4 HOH A 163 963 87 HOH HOH . D 4 HOH A 164 964 89 HOH HOH . D 4 HOH A 165 965 90 HOH HOH . D 4 HOH A 166 966 92 HOH HOH . D 4 HOH A 167 967 94 HOH HOH . D 4 HOH A 168 968 97 HOH HOH . D 4 HOH A 169 969 98 HOH HOH . D 4 HOH A 170 970 100 HOH HOH . D 4 HOH A 171 971 102 HOH HOH . D 4 HOH A 172 972 103 HOH HOH . D 4 HOH A 173 973 104 HOH HOH . D 4 HOH A 174 974 105 HOH HOH . D 4 HOH A 175 975 106 HOH HOH . D 4 HOH A 176 976 108 HOH HOH . D 4 HOH A 177 977 109 HOH HOH . D 4 HOH A 178 978 110 HOH HOH . D 4 HOH A 179 979 111 HOH HOH . D 4 HOH A 180 980 112 HOH HOH . D 4 HOH A 181 981 114 HOH HOH . D 4 HOH A 182 982 115 HOH HOH . D 4 HOH A 183 983 116 HOH HOH . D 4 HOH A 184 984 117 HOH HOH . D 4 HOH A 185 985 119 HOH HOH . D 4 HOH A 186 986 123 HOH HOH . D 4 HOH A 187 987 124 HOH HOH . D 4 HOH A 188 988 126 HOH HOH . D 4 HOH A 189 989 127 HOH HOH . D 4 HOH A 190 990 130 HOH HOH . D 4 HOH A 191 991 131 HOH HOH . D 4 HOH A 192 992 132 HOH HOH . D 4 HOH A 193 993 133 HOH HOH . D 4 HOH A 194 994 134 HOH HOH . D 4 HOH A 195 995 136 HOH HOH . D 4 HOH A 196 996 138 HOH HOH . D 4 HOH A 197 997 139 HOH HOH . D 4 HOH A 198 998 144 HOH HOH . D 4 HOH A 199 999 145 HOH HOH . D 4 HOH A 200 1000 146 HOH HOH . D 4 HOH A 201 1001 147 HOH HOH . D 4 HOH A 202 1002 148 HOH HOH . D 4 HOH A 203 1003 155 HOH HOH . D 4 HOH A 204 1004 159 HOH HOH . D 4 HOH A 205 1005 160 HOH HOH . D 4 HOH A 206 1006 162 HOH HOH . D 4 HOH A 207 1007 164 HOH HOH . D 4 HOH A 208 1008 165 HOH HOH . D 4 HOH A 209 1009 166 HOH HOH . D 4 HOH A 210 1010 167 HOH HOH . D 4 HOH A 211 1011 168 HOH HOH . D 4 HOH A 212 1012 169 HOH HOH . D 4 HOH A 213 1013 173 HOH HOH . D 4 HOH A 214 1014 174 HOH HOH . D 4 HOH A 215 1015 176 HOH HOH . D 4 HOH A 216 1016 178 HOH HOH . D 4 HOH A 217 1017 183 HOH HOH . D 4 HOH A 218 1018 185 HOH HOH . D 4 HOH A 219 1019 188 HOH HOH . D 4 HOH A 220 1020 192 HOH HOH . D 4 HOH A 221 1021 193 HOH HOH . D 4 HOH A 222 1022 194 HOH HOH . D 4 HOH A 223 1023 203 HOH HOH . D 4 HOH A 224 1024 204 HOH HOH . D 4 HOH A 225 1025 205 HOH HOH . D 4 HOH A 226 1026 209 HOH HOH . D 4 HOH A 227 1027 211 HOH HOH . D 4 HOH A 228 1028 219 HOH HOH . D 4 HOH A 229 1029 220 HOH HOH . D 4 HOH A 230 1030 221 HOH HOH . D 4 HOH A 231 1031 222 HOH HOH . D 4 HOH A 232 1032 227 HOH HOH . D 4 HOH A 233 1033 231 HOH HOH . D 4 HOH A 234 1034 233 HOH HOH . D 4 HOH A 235 1035 234 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 24.838 41.67 69.672 1 62.67 ? C1 GOL 702 A 1 HETATM 2 O O1 GOL . . . C 3 26.199 41.293 69.942 1 58.42 ? O1 GOL 702 A 1 HETATM 3 C C2 GOL . . . C 3 24.006 40.478 69.173 1 61 ? C2 GOL 702 A 1 HETATM 4 O O2 GOL . . . C 3 24.213 39.335 70.002 1 59.04 ? O2 GOL 702 A 1 HETATM 5 C C3 GOL . . . C 3 22.514 40.788 69.185 1 60.22 ? C3 GOL 702 A 1 HETATM 6 O O3 GOL . . . C 3 22.321 42.092 69.735 1 60.68 ? O3 GOL 702 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 421 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 6 #