data_4YJZ
#
_model_server_result.job_id            wEi4DxEcUvJYUZkdtdW2ew 
_model_server_result.datetime_utc      '2024-12-04 18:30:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yjz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4YJZ 
#
_exptl.entry_id    4YJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YJZ 
_cell.length_a            63.149 
_cell.length_b            153.166 
_cell.length_c            177.628 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 E CYS 59 1_555 A SG CYS 20 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 43 E CYS 94 1_555 A SG CYS 88 E CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
disulf ? disulf3 B SG CYS 22 L CYS 22 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 149 L CYS 222 1_555 B SG CYS 223 L CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
covale ? covale1 A ND2 ASN 7 E ASN 58 1_555 C C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale2 A ND2 ASN 40 E ASN 91 1_555 D C1 NAG . E NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.72 ? 
covale ? covale3 A ND2 ASN 78 E ASN 129 1_555 E C1 NAG . E NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4YJZ 
_atom_sites.fract_transf_matrix[1][1]    0.015836 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00563 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG E 1 301 269 NAG NAG . 
D 3 NAG E 1 302 270 NAG NAG . 
E 3 NAG E 1 303 271 NAG NAG . 
F 4 HOH E 1 401 70 HOH HOH . 
F 4 HOH E 2 402 9 HOH HOH . 
F 4 HOH E 3 403 17 HOH HOH . 
F 4 HOH E 4 404 13 HOH HOH . 
F 4 HOH E 5 405 27 HOH HOH . 
F 4 HOH E 6 406 11 HOH HOH . 
F 4 HOH E 7 407 44 HOH HOH . 
F 4 HOH E 8 408 38 HOH HOH . 
F 4 HOH E 9 409 28 HOH HOH . 
F 4 HOH E 10 410 6 HOH HOH . 
F 4 HOH E 11 411 56 HOH HOH . 
F 4 HOH E 12 412 10 HOH HOH . 
F 4 HOH E 13 413 40 HOH HOH . 
F 4 HOH E 14 414 46 HOH HOH . 
F 4 HOH E 15 415 36 HOH HOH . 
F 4 HOH E 16 416 67 HOH HOH . 
F 4 HOH E 17 417 63 HOH HOH . 
F 4 HOH E 18 418 52 HOH HOH . 
F 4 HOH E 19 419 47 HOH HOH . 
F 4 HOH E 20 420 26 HOH HOH . 
G 4 HOH L 1 401 49 HOH HOH . 
G 4 HOH L 2 402 1 HOH HOH . 
G 4 HOH L 3 403 19 HOH HOH . 
G 4 HOH L 4 404 3 HOH HOH . 
G 4 HOH L 5 405 53 HOH HOH . 
G 4 HOH L 6 406 58 HOH HOH . 
G 4 HOH L 7 407 39 HOH HOH . 
G 4 HOH L 8 408 21 HOH HOH . 
G 4 HOH L 9 409 12 HOH HOH . 
G 4 HOH L 10 410 50 HOH HOH . 
G 4 HOH L 11 411 57 HOH HOH . 
G 4 HOH L 12 412 14 HOH HOH . 
G 4 HOH L 13 413 18 HOH HOH . 
G 4 HOH L 14 414 24 HOH HOH . 
G 4 HOH L 15 415 31 HOH HOH . 
G 4 HOH L 16 416 5 HOH HOH . 
G 4 HOH L 17 417 42 HOH HOH . 
G 4 HOH L 18 418 15 HOH HOH . 
G 4 HOH L 19 419 64 HOH HOH . 
G 4 HOH L 20 420 66 HOH HOH . 
G 4 HOH L 21 421 8 HOH HOH . 
G 4 HOH L 22 422 54 HOH HOH . 
G 4 HOH L 23 423 45 HOH HOH . 
G 4 HOH L 24 424 20 HOH HOH . 
G 4 HOH L 25 425 22 HOH HOH . 
G 4 HOH L 26 426 32 HOH HOH . 
G 4 HOH L 27 427 41 HOH HOH . 
G 4 HOH L 28 428 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 130.169 178.209 198.955 1 122.65 ? C1 NAG 301 E 1 
HETATM 2 C C2 NAG . . . C 3 130.362 178.717 197.525 1 114.4 ? C2 NAG 301 E 1 
HETATM 3 C C3 NAG . . . C 3 131.557 178.09 196.806 1 113.97 ? C3 NAG 301 E 1 
HETATM 4 C C4 NAG . . . C 3 132.733 177.857 197.754 1 116.02 ? C4 NAG 301 E 1 
HETATM 5 C C5 NAG . . . C 3 132.327 177.251 199.102 1 121.51 ? C5 NAG 301 E 1 
HETATM 6 C C6 NAG . . . C 3 132.758 178.159 200.249 1 129.25 ? C6 NAG 301 E 1 
HETATM 7 C C7 NAG . . . C 3 127.976 178.958 197.148 1 121.96 ? C7 NAG 301 E 1 
HETATM 8 C C8 NAG . . . C 3 127.149 178.037 197.995 1 115.11 ? C8 NAG 301 E 1 
HETATM 9 N N2 NAG . . . C 3 129.154 178.479 196.757 1 116.76 ? N2 NAG 301 E 1 
HETATM 10 O O3 NAG . . . C 3 131.972 178.947 195.736 1 113.65 ? O3 NAG 301 E 1 
HETATM 11 O O4 NAG . . . C 3 133.683 176.992 197.119 1 115.45 ? O4 NAG 301 E 1 
HETATM 12 O O5 NAG . . . C 3 130.919 177.018 199.194 1 125.88 ? O5 NAG 301 E 1 
HETATM 13 O O6 NAG . . . C 3 131.861 177.991 201.353 1 137.92 ? O6 NAG 301 E 1 
HETATM 14 O O7 NAG . . . C 3 127.594 180.075 196.839 1 116.56 ? O7 NAG 301 E 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#