data_4YK3
#
_model_server_result.job_id            fLHQYgfmBzWk91B0G0I_-A 
_model_server_result.datetime_utc      '2025-08-31 09:49:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yk3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":302}' 
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_entry.id    4YK3 
#
_exptl.entry_id    4YK3 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.66 
_cell.angle_gamma         90 
_cell.entry_id            4YK3 
_cell.length_a            58.07 
_cell.length_b            77.42 
_cell.length_c            67.51 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YK3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H 1 1 
B,E,I 2 1 
C,F,G,J 3 1 
D,K 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4YK3 
_atom_sites.fract_transf_matrix[1][1]    0.017221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001101 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EDO B 1 301 3 EDO EDO . 
F 2 EDO C 1 301 1 EDO EDO . 
G 2 EDO C 1 302 2 EDO EDO . 
H 3 HOH A 1 301 54 HOH HOH . 
H 3 HOH A 2 302 120 HOH HOH . 
H 3 HOH A 3 303 116 HOH HOH . 
H 3 HOH A 4 304 86 HOH HOH . 
H 3 HOH A 5 305 32 HOH HOH . 
H 3 HOH A 6 306 107 HOH HOH . 
H 3 HOH A 7 307 19 HOH HOH . 
H 3 HOH A 8 308 45 HOH HOH . 
H 3 HOH A 9 309 53 HOH HOH . 
H 3 HOH A 10 310 16 HOH HOH . 
H 3 HOH A 11 311 67 HOH HOH . 
H 3 HOH A 12 312 42 HOH HOH . 
H 3 HOH A 13 313 43 HOH HOH . 
H 3 HOH A 14 314 105 HOH HOH . 
H 3 HOH A 15 315 73 HOH HOH . 
H 3 HOH A 16 316 110 HOH HOH . 
H 3 HOH A 17 317 12 HOH HOH . 
H 3 HOH A 18 318 127 HOH HOH . 
H 3 HOH A 19 319 97 HOH HOH . 
H 3 HOH A 20 320 4 HOH HOH . 
H 3 HOH A 21 321 10 HOH HOH . 
H 3 HOH A 22 322 24 HOH HOH . 
H 3 HOH A 23 323 25 HOH HOH . 
H 3 HOH A 24 324 27 HOH HOH . 
H 3 HOH A 25 325 30 HOH HOH . 
H 3 HOH A 26 326 33 HOH HOH . 
H 3 HOH A 27 327 46 HOH HOH . 
H 3 HOH A 28 328 52 HOH HOH . 
H 3 HOH A 29 329 60 HOH HOH . 
H 3 HOH A 30 330 62 HOH HOH . 
H 3 HOH A 31 331 63 HOH HOH . 
H 3 HOH A 32 332 64 HOH HOH . 
H 3 HOH A 33 333 68 HOH HOH . 
H 3 HOH A 34 334 69 HOH HOH . 
H 3 HOH A 35 335 74 HOH HOH . 
H 3 HOH A 36 336 82 HOH HOH . 
H 3 HOH A 37 337 83 HOH HOH . 
H 3 HOH A 38 338 85 HOH HOH . 
H 3 HOH A 39 339 87 HOH HOH . 
H 3 HOH A 40 340 89 HOH HOH . 
H 3 HOH A 41 341 90 HOH HOH . 
H 3 HOH A 42 342 94 HOH HOH . 
H 3 HOH A 43 343 99 HOH HOH . 
H 3 HOH A 44 344 114 HOH HOH . 
H 3 HOH A 45 345 123 HOH HOH . 
I 3 HOH B 1 401 117 HOH HOH . 
I 3 HOH B 2 402 28 HOH HOH . 
I 3 HOH B 3 403 124 HOH HOH . 
I 3 HOH B 4 404 56 HOH HOH . 
I 3 HOH B 5 405 51 HOH HOH . 
I 3 HOH B 6 406 21 HOH HOH . 
I 3 HOH B 7 407 17 HOH HOH . 
I 3 HOH B 8 408 38 HOH HOH . 
I 3 HOH B 9 409 101 HOH HOH . 
I 3 HOH B 10 410 15 HOH HOH . 
I 3 HOH B 11 411 11 HOH HOH . 
I 3 HOH B 12 412 65 HOH HOH . 
I 3 HOH B 13 413 59 HOH HOH . 
I 3 HOH B 14 414 113 HOH HOH . 
I 3 HOH B 15 415 103 HOH HOH . 
I 3 HOH B 16 416 91 HOH HOH . 
I 3 HOH B 17 417 14 HOH HOH . 
I 3 HOH B 18 418 18 HOH HOH . 
I 3 HOH B 19 419 36 HOH HOH . 
I 3 HOH B 20 420 44 HOH HOH . 
I 3 HOH B 21 421 81 HOH HOH . 
I 3 HOH B 22 422 92 HOH HOH . 
I 3 HOH B 23 423 93 HOH HOH . 
I 3 HOH B 24 424 104 HOH HOH . 
I 3 HOH B 25 425 106 HOH HOH . 
I 3 HOH B 26 426 112 HOH HOH . 
I 3 HOH B 27 427 125 HOH HOH . 
J 3 HOH C 1 401 8 HOH HOH . 
J 3 HOH C 2 402 96 HOH HOH . 
J 3 HOH C 3 403 9 HOH HOH . 
J 3 HOH C 4 404 111 HOH HOH . 
J 3 HOH C 5 405 126 HOH HOH . 
J 3 HOH C 6 406 108 HOH HOH . 
J 3 HOH C 7 407 1 HOH HOH . 
J 3 HOH C 8 408 2 HOH HOH . 
J 3 HOH C 9 409 3 HOH HOH . 
J 3 HOH C 10 410 5 HOH HOH . 
J 3 HOH C 11 411 7 HOH HOH . 
J 3 HOH C 12 412 20 HOH HOH . 
J 3 HOH C 13 413 22 HOH HOH . 
J 3 HOH C 14 414 26 HOH HOH . 
J 3 HOH C 15 415 31 HOH HOH . 
J 3 HOH C 16 416 34 HOH HOH . 
J 3 HOH C 17 417 35 HOH HOH . 
J 3 HOH C 18 418 40 HOH HOH . 
J 3 HOH C 19 419 41 HOH HOH . 
J 3 HOH C 20 420 47 HOH HOH . 
J 3 HOH C 21 421 48 HOH HOH . 
J 3 HOH C 22 422 49 HOH HOH . 
J 3 HOH C 23 423 55 HOH HOH . 
J 3 HOH C 24 424 58 HOH HOH . 
J 3 HOH C 25 425 66 HOH HOH . 
J 3 HOH C 26 426 70 HOH HOH . 
J 3 HOH C 27 427 72 HOH HOH . 
J 3 HOH C 28 428 75 HOH HOH . 
J 3 HOH C 29 429 77 HOH HOH . 
J 3 HOH C 30 430 78 HOH HOH . 
J 3 HOH C 31 431 80 HOH HOH . 
J 3 HOH C 32 432 84 HOH HOH . 
J 3 HOH C 33 433 98 HOH HOH . 
J 3 HOH C 34 434 121 HOH HOH . 
J 3 HOH C 35 435 122 HOH HOH . 
K 3 HOH D 1 301 128 HOH HOH . 
K 3 HOH D 2 302 118 HOH HOH . 
K 3 HOH D 3 303 115 HOH HOH . 
K 3 HOH D 4 304 76 HOH HOH . 
K 3 HOH D 5 305 61 HOH HOH . 
K 3 HOH D 6 306 119 HOH HOH . 
K 3 HOH D 7 307 6 HOH HOH . 
K 3 HOH D 8 308 13 HOH HOH . 
K 3 HOH D 9 309 23 HOH HOH . 
K 3 HOH D 10 310 29 HOH HOH . 
K 3 HOH D 11 311 39 HOH HOH . 
K 3 HOH D 12 312 50 HOH HOH . 
K 3 HOH D 13 313 57 HOH HOH . 
K 3 HOH D 14 314 71 HOH HOH . 
K 3 HOH D 15 315 79 HOH HOH . 
K 3 HOH D 16 316 88 HOH HOH . 
K 3 HOH D 17 317 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 2 -4.185 18.864 29.233 1 61.39 ? C1 EDO 302 C 1 
HETATM 2 O O1 EDO . . . G 2 -4.612 17.493 29.297 1 60.9 ? O1 EDO 302 C 1 
HETATM 3 C C2 EDO . . . G 2 -2.727 19.005 29.644 1 59.83 ? C2 EDO 302 C 1 
HETATM 4 O O2 EDO . . . G 2 -1.889 18.513 28.59 1 60.2 ? O2 EDO 302 C 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           560 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#