data_4YK9 # _model_server_result.job_id dmX1hSSonzKIFcnM--M6nw _model_server_result.datetime_utc '2024-10-19 22:35:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4YK9 # _exptl.entry_id 4YK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YK9 _cell.length_a 81.738 _cell.length_b 81.738 _cell.length_c 42.568 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,K,L 1 1 C,D,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C NLG 1 B NLG 1 1_555 B N ILE 2 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C ASP 13 B ASP 13 1_555 B N SEP 14 B SEP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C SEP 14 B SEP 14 1_555 B N PHE 15 B PHE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C ALA 20 B ALA 20 1_555 B N AAR 21 B AAR 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 D C NLG 1 G NLG 1 1_555 D N ILE 2 G ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 D C ASP 13 G ASP 13 1_555 D N SEP 14 G SEP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 D C SEP 14 G SEP 14 1_555 D N PHE 15 G PHE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C ALA 20 G ALA 20 1_555 D N AAR 21 G AAR 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YK9 _atom_sites.fract_transf_matrix[1][1] 0.012234 _atom_sites.fract_transf_matrix[1][2] 0.007063 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ACT A 1 201 1 ACT ACT . F 4 CL A 1 202 1 CL CL . G 4 CL A 1 203 2 CL CL . H 3 ACT A 1 204 1 ACT ACT . I 3 ACT F 1 201 1 ACT ACT . J 4 CL F 1 202 2 CL CL . K 5 HOH A 1 301 51 HOH HOH . K 5 HOH A 2 302 43 HOH HOH . K 5 HOH A 3 303 18 HOH HOH . K 5 HOH A 4 304 92 HOH HOH . K 5 HOH A 5 305 8 HOH HOH . K 5 HOH A 6 306 13 HOH HOH . K 5 HOH A 7 307 1 HOH HOH . K 5 HOH A 8 308 35 HOH HOH . K 5 HOH A 9 309 38 HOH HOH . K 5 HOH A 10 310 98 HOH HOH . K 5 HOH A 11 311 56 HOH HOH . K 5 HOH A 12 312 17 HOH HOH . K 5 HOH A 13 313 160 HOH HOH . K 5 HOH A 14 314 88 HOH HOH . K 5 HOH A 15 315 231 HOH HOH . K 5 HOH A 16 316 47 HOH HOH . K 5 HOH A 17 317 3 HOH HOH . K 5 HOH A 18 318 29 HOH HOH . K 5 HOH A 19 319 255 HOH HOH . K 5 HOH A 20 320 79 HOH HOH . K 5 HOH A 21 321 93 HOH HOH . K 5 HOH A 22 322 50 HOH HOH . K 5 HOH A 23 323 154 HOH HOH . K 5 HOH A 24 324 107 HOH HOH . K 5 HOH A 25 325 64 HOH HOH . K 5 HOH A 26 326 235 HOH HOH . K 5 HOH A 27 327 59 HOH HOH . K 5 HOH A 28 328 180 HOH HOH . K 5 HOH A 29 329 5 HOH HOH . K 5 HOH A 30 330 16 HOH HOH . K 5 HOH A 31 331 20 HOH HOH . K 5 HOH A 32 332 25 HOH HOH . K 5 HOH A 33 333 27 HOH HOH . K 5 HOH A 34 334 28 HOH HOH . K 5 HOH A 35 335 32 HOH HOH . K 5 HOH A 36 336 42 HOH HOH . K 5 HOH A 37 337 46 HOH HOH . K 5 HOH A 38 338 53 HOH HOH . K 5 HOH A 39 339 58 HOH HOH . K 5 HOH A 40 340 102 HOH HOH . K 5 HOH A 41 341 105 HOH HOH . K 5 HOH A 42 342 134 HOH HOH . K 5 HOH A 43 343 138 HOH HOH . K 5 HOH A 44 344 168 HOH HOH . K 5 HOH A 45 345 175 HOH HOH . K 5 HOH A 46 346 198 HOH HOH . K 5 HOH A 47 347 258 HOH HOH . L 5 HOH B 1 101 130 HOH HOH . L 5 HOH B 2 102 94 HOH HOH . L 5 HOH B 3 103 116 HOH HOH . L 5 HOH B 4 104 12 HOH HOH . L 5 HOH B 5 105 31 HOH HOH . L 5 HOH B 6 106 36 HOH HOH . L 5 HOH B 7 107 45 HOH HOH . L 5 HOH B 8 108 74 HOH HOH . L 5 HOH B 9 109 83 HOH HOH . L 5 HOH B 10 110 115 HOH HOH . L 5 HOH B 11 111 122 HOH HOH . L 5 HOH B 12 112 177 HOH HOH . M 5 HOH F 1 301 65 HOH HOH . M 5 HOH F 2 302 140 HOH HOH . M 5 HOH F 3 303 7 HOH HOH . M 5 HOH F 4 304 136 HOH HOH . M 5 HOH F 5 305 21 HOH HOH . M 5 HOH F 6 306 239 HOH HOH . M 5 HOH F 7 307 96 HOH HOH . M 5 HOH F 8 308 108 HOH HOH . M 5 HOH F 9 309 4 HOH HOH . M 5 HOH F 10 310 109 HOH HOH . M 5 HOH F 11 311 66 HOH HOH . M 5 HOH F 12 312 76 HOH HOH . M 5 HOH F 13 313 69 HOH HOH . M 5 HOH F 14 314 2 HOH HOH . M 5 HOH F 15 315 62 HOH HOH . M 5 HOH F 16 316 104 HOH HOH . M 5 HOH F 17 317 170 HOH HOH . M 5 HOH F 18 318 182 HOH HOH . M 5 HOH F 19 319 196 HOH HOH . M 5 HOH F 20 320 193 HOH HOH . M 5 HOH F 21 321 97 HOH HOH . M 5 HOH F 22 322 256 HOH HOH . M 5 HOH F 23 323 6 HOH HOH . M 5 HOH F 24 324 10 HOH HOH . M 5 HOH F 25 325 14 HOH HOH . M 5 HOH F 26 326 15 HOH HOH . M 5 HOH F 27 327 23 HOH HOH . M 5 HOH F 28 328 26 HOH HOH . M 5 HOH F 29 329 30 HOH HOH . M 5 HOH F 30 330 33 HOH HOH . M 5 HOH F 31 331 40 HOH HOH . M 5 HOH F 32 332 48 HOH HOH . M 5 HOH F 33 333 54 HOH HOH . M 5 HOH F 34 334 57 HOH HOH . M 5 HOH F 35 335 60 HOH HOH . M 5 HOH F 36 336 63 HOH HOH . M 5 HOH F 37 337 77 HOH HOH . M 5 HOH F 38 338 81 HOH HOH . M 5 HOH F 39 339 82 HOH HOH . M 5 HOH F 40 340 85 HOH HOH . M 5 HOH F 41 341 87 HOH HOH . M 5 HOH F 42 342 90 HOH HOH . M 5 HOH F 43 343 106 HOH HOH . M 5 HOH F 44 344 110 HOH HOH . M 5 HOH F 45 345 112 HOH HOH . M 5 HOH F 46 346 127 HOH HOH . M 5 HOH F 47 347 133 HOH HOH . M 5 HOH F 48 348 169 HOH HOH . M 5 HOH F 49 349 203 HOH HOH . M 5 HOH F 50 350 234 HOH HOH . N 5 HOH G 1 101 24 HOH HOH . N 5 HOH G 2 102 22 HOH HOH . N 5 HOH G 3 103 162 HOH HOH . N 5 HOH G 4 104 132 HOH HOH . N 5 HOH G 5 105 89 HOH HOH . N 5 HOH G 6 106 41 HOH HOH . N 5 HOH G 7 107 49 HOH HOH . N 5 HOH G 8 108 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . E 3 21.39 8.165 12.983 1 25.37 ? C ACT 201 A 1 HETATM 2 O O ACT . . . E 3 22.568 8.002 12.551 1 31.28 ? O ACT 201 A 1 HETATM 3 O OXT ACT . . . E 3 20.502 7.267 12.996 1 29.29 ? OXT ACT 201 A 1 HETATM 4 C CH3 ACT . . . E 3 21.014 9.523 13.513 1 21.86 ? CH3 ACT 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #