data_4YKA
#
_model_server_result.job_id            6Oq9718DWDfNTnm1IN8XyA 
_model_server_result.datetime_utc      '2024-10-19 12:36:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":201}' 
#
_entry.id    4YKA 
#
_exptl.entry_id    4YKA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.204 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-TYROSINAMIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YKA 
_cell.length_a            57.945 
_cell.length_b            92.648 
_cell.length_c            94.918 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,L 1 1 
B,G,M 2 1 
C,H,I,J,N 3 1 
D,K,O 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C9 H12 N2 O2' 
_chem_comp.formula_weight    180.204 
_chem_comp.id                TYC 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              L-TYROSINAMIDE 
_chem_comp.type              'l-peptide cooh carboxy terminus' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA TYC sing 291 n n 
N H0 TYC sing 292 n n 
N H TYC sing 293 n n 
CA C TYC sing 294 n n 
CA CB TYC sing 295 n n 
CA HA TYC sing 296 n n 
C O TYC doub 297 n n 
C NXT TYC sing 298 n n 
CB CG TYC sing 299 n n 
CB HB1 TYC sing 300 n n 
CB HB2 TYC sing 301 n n 
CG CD1 TYC doub 302 n y 
CG CD2 TYC sing 303 n y 
CD1 CE1 TYC sing 304 n y 
CD1 HD1 TYC sing 305 n n 
CD2 CE2 TYC doub 306 n y 
CD2 HD2 TYC sing 307 n n 
CE1 CZ TYC doub 308 n y 
CE1 HE1 TYC sing 309 n n 
CE2 CZ TYC sing 310 n y 
CE2 HE2 TYC sing 311 n n 
OH CZ TYC sing 312 n n 
OH HH TYC sing 313 n n 
NXT HT21 TYC sing 314 n n 
NXT HT22 TYC sing 315 n n 
#
_atom_sites.entry_id                     4YKA 
_atom_sites.fract_transf_matrix[1][1]    0.017258 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010794 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 201 1 SO4 SO4 . 
F 3 TYC A 1 202 4 TYC TYC . 
G 3 TYC B 1 201 2 TYC TYC . 
H 2 SO4 C 1 201 2 SO4 SO4 . 
I 2 SO4 C 1 202 3 SO4 SO4 . 
J 3 TYC C 1 203 3 TYC TYC . 
K 3 TYC D 1 201 5 TYC TYC . 
L 4 HOH A 1 301 19 HOH HOH . 
L 4 HOH A 2 302 14 HOH HOH . 
L 4 HOH A 3 303 29 HOH HOH . 
L 4 HOH A 4 304 15 HOH HOH . 
L 4 HOH A 5 305 16 HOH HOH . 
L 4 HOH A 6 306 21 HOH HOH . 
L 4 HOH A 7 307 46 HOH HOH . 
L 4 HOH A 8 308 22 HOH HOH . 
L 4 HOH A 9 309 18 HOH HOH . 
L 4 HOH A 10 310 45 HOH HOH . 
L 4 HOH A 11 311 5 HOH HOH . 
L 4 HOH A 12 312 2 HOH HOH . 
L 4 HOH A 13 313 3 HOH HOH . 
M 4 HOH B 1 301 17 HOH HOH . 
M 4 HOH B 2 302 11 HOH HOH . 
M 4 HOH B 3 303 6 HOH HOH . 
M 4 HOH B 4 304 12 HOH HOH . 
M 4 HOH B 5 305 43 HOH HOH . 
M 4 HOH B 6 306 30 HOH HOH . 
M 4 HOH B 7 307 32 HOH HOH . 
M 4 HOH B 8 308 42 HOH HOH . 
M 4 HOH B 9 309 10 HOH HOH . 
M 4 HOH B 10 310 28 HOH HOH . 
M 4 HOH B 11 311 13 HOH HOH . 
M 4 HOH B 12 312 40 HOH HOH . 
M 4 HOH B 13 313 31 HOH HOH . 
N 4 HOH C 1 301 23 HOH HOH . 
N 4 HOH C 2 302 41 HOH HOH . 
N 4 HOH C 3 303 26 HOH HOH . 
N 4 HOH C 4 304 33 HOH HOH . 
N 4 HOH C 5 305 9 HOH HOH . 
N 4 HOH C 6 306 1 HOH HOH . 
N 4 HOH C 7 307 25 HOH HOH . 
N 4 HOH C 8 308 8 HOH HOH . 
N 4 HOH C 9 309 24 HOH HOH . 
N 4 HOH C 10 310 34 HOH HOH . 
N 4 HOH C 11 311 37 HOH HOH . 
N 4 HOH C 12 312 39 HOH HOH . 
N 4 HOH C 13 313 27 HOH HOH . 
O 4 HOH D 1 301 38 HOH HOH . 
O 4 HOH D 2 302 4 HOH HOH . 
O 4 HOH D 3 303 35 HOH HOH . 
O 4 HOH D 4 304 7 HOH HOH . 
O 4 HOH D 5 305 20 HOH HOH . 
O 4 HOH D 6 306 44 HOH HOH . 
O 4 HOH D 7 307 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N TYC . . . K 3 -12.966 20.678 -34.866 1 68.52 ? N TYC 201 D 1 
HETATM 2 C CA TYC . . . K 3 -13.162 19.787 -33.768 1 68.81 ? CA TYC 201 D 1 
HETATM 3 C C TYC . . . K 3 -14.596 19.312 -33.755 1 75.18 ? C TYC 201 D 1 
HETATM 4 O O TYC . . . K 3 -15.356 19.668 -34.633 1 94.4 ? O TYC 201 D 1 
HETATM 5 C CB TYC . . . K 3 -12.849 20.5 -32.47 1 55.18 ? CB TYC 201 D 1 
HETATM 6 C CG TYC . . . K 3 -11.496 21.167 -32.579 1 50.14 ? CG TYC 201 D 1 
HETATM 7 C CD1 TYC . . . K 3 -10.38 20.419 -32.689 1 48.6 ? CD1 TYC 201 D 1 
HETATM 8 C CD2 TYC . . . K 3 -11.402 22.675 -32.567 1 51.02 ? CD2 TYC 201 D 1 
HETATM 9 C CE1 TYC . . . K 3 -9.032 21.091 -32.804 1 44.25 ? CE1 TYC 201 D 1 
HETATM 10 C CE2 TYC . . . K 3 -10.203 23.274 -32.669 1 40.78 ? CE2 TYC 201 D 1 
HETATM 11 O OH TYC . . . K 3 -7.71 23.067 -32.899 1 45.82 ? OH TYC 201 D 1 
HETATM 12 C CZ TYC . . . K 3 -8.955 22.435 -32.793 1 42.5 ? CZ TYC 201 D 1 
HETATM 13 N NXT TYC . . . K 3 -15.064 18.452 -32.728 1 68.86 ? NXT TYC 201 D 1 
HETATM 14 H H0 TYC . . . K 3 -13.311 21.502 -34.656 1 82.23 ? H0 TYC 201 D 1 
HETATM 15 H H TYC . . . K 3 -12.068 20.756 -35.04 1 82.23 ? H TYC 201 D 1 
HETATM 16 H HA TYC . . . K 3 -12.566 19.017 -33.866 1 82.57 ? HA TYC 201 D 1 
HETATM 17 H HB1 TYC . . . K 3 -13.533 21.177 -32.296 1 66.21 ? HB1 TYC 201 D 1 
HETATM 18 H HB2 TYC . . . K 3 -12.836 19.852 -31.737 1 66.21 ? HB2 TYC 201 D 1 
HETATM 19 H HD1 TYC . . . K 3 -10.443 19.445 -32.698 1 58.32 ? HD1 TYC 201 D 1 
HETATM 20 H HD2 TYC . . . K 3 -12.212 23.213 -32.488 1 61.22 ? HD2 TYC 201 D 1 
HETATM 21 H HE1 TYC . . . K 3 -8.221 20.554 -32.885 1 53.1 ? HE1 TYC 201 D 1 
HETATM 22 H HE2 TYC . . . K 3 -10.139 24.248 -32.662 1 48.94 ? HE2 TYC 201 D 1 
HETATM 23 H HH TYC . . . K 3 -7.799 23.821 -33.363 1 54.98 ? HH TYC 201 D 1 
HETATM 24 H HT21 TYC . . . K 3 -14.497 18.18 -32.065 1 82.63 ? HT21 TYC 201 D 1 
HETATM 25 H HT22 TYC . . . K 3 -15.934 18.169 -32.729 1 82.63 ? HT22 TYC 201 D 1 
HETATM 26 H H03 TYC . . . K 3 -13.394 20.347 -35.607 1 82.23 ? H03 TYC 201 D 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#