data_4YKF # _model_server_result.job_id ZKb8lJHzuA_NaW38HoWEeg _model_server_result.datetime_utc '2025-01-03 03:02:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ykf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 4YKF # _exptl.entry_id 4YKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.34 _cell.angle_gamma 90 _cell.entry_id 4YKF _cell.length_a 107.09 _cell.length_b 59.39 _cell.length_c 121.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_658 -x+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 -25.388372 0 339.089787 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 129 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 A SG CYS 345 A CYS 345 1_555 A SG CYS 348 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 A NE2 HIS 85 A HIS 85 1_555 D CD CD . A CD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A OE1 GLU 110 A GLU 110 1_555 D CD CD . A CD 603 4_547 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc3 A OE2 GLU 110 A GLU 110 1_555 D CD CD . A CD 603 4_547 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 A ND1 HIS 130 A HIS 130 1_555 D CD CD . A CD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 487 n n S O2 SO4 doub 488 n n S O3 SO4 sing 489 n n S O4 SO4 sing 490 n n # _atom_sites.entry_id 4YKF _atom_sites.fract_transf_matrix[1][1] 0.009338 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003648 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 601 FAD FAD . C 3 NAI A 1 602 602 NAI NAI . D 4 CD A 1 603 603 CD CD . E 5 SO4 A 1 604 604 SO4 SO4 . F 5 SO4 A 1 605 605 SO4 SO4 . G 5 SO4 A 1 606 606 SO4 SO4 . H 5 SO4 A 1 607 607 SO4 SO4 . I 5 SO4 A 1 608 608 SO4 SO4 . J 5 SO4 A 1 609 609 SO4 SO4 . K 5 SO4 A 1 610 610 SO4 SO4 . L 5 SO4 A 1 611 611 SO4 SO4 . M 5 SO4 A 1 612 612 SO4 SO4 . N 5 SO4 A 1 613 613 SO4 SO4 . O 6 GOL A 1 614 614 GOL GOL . P 6 GOL A 1 615 615 GOL GOL . Q 6 GOL A 1 616 616 GOL GOL . R 7 PEG A 1 617 617 PEG PEG . S 7 PEG A 1 618 618 PEG PEG . T 7 PEG A 1 619 619 PEG PEG . U 8 HOH A 1 701 828 HOH HOH . U 8 HOH A 2 702 701 HOH HOH . U 8 HOH A 3 703 825 HOH HOH . U 8 HOH A 4 704 702 HOH HOH . U 8 HOH A 5 705 703 HOH HOH . U 8 HOH A 6 706 775 HOH HOH . U 8 HOH A 7 707 764 HOH HOH . U 8 HOH A 8 708 760 HOH HOH . U 8 HOH A 9 709 704 HOH HOH . U 8 HOH A 10 710 806 HOH HOH . U 8 HOH A 11 711 705 HOH HOH . U 8 HOH A 12 712 807 HOH HOH . U 8 HOH A 13 713 706 HOH HOH . U 8 HOH A 14 714 707 HOH HOH . U 8 HOH A 15 715 779 HOH HOH . U 8 HOH A 16 716 708 HOH HOH . U 8 HOH A 17 717 777 HOH HOH . U 8 HOH A 18 718 820 HOH HOH . U 8 HOH A 19 719 709 HOH HOH . U 8 HOH A 20 720 710 HOH HOH . U 8 HOH A 21 721 827 HOH HOH . U 8 HOH A 22 722 762 HOH HOH . U 8 HOH A 23 723 761 HOH HOH . U 8 HOH A 24 724 839 HOH HOH . U 8 HOH A 25 725 785 HOH HOH . U 8 HOH A 26 726 814 HOH HOH . U 8 HOH A 27 727 810 HOH HOH . U 8 HOH A 28 728 769 HOH HOH . U 8 HOH A 29 729 842 HOH HOH . U 8 HOH A 30 730 711 HOH HOH . U 8 HOH A 31 731 712 HOH HOH . U 8 HOH A 32 732 713 HOH HOH . U 8 HOH A 33 733 781 HOH HOH . U 8 HOH A 34 734 774 HOH HOH . U 8 HOH A 35 735 714 HOH HOH . U 8 HOH A 36 736 715 HOH HOH . U 8 HOH A 37 737 716 HOH HOH . U 8 HOH A 38 738 758 HOH HOH . U 8 HOH A 39 739 765 HOH HOH . U 8 HOH A 40 740 717 HOH HOH . U 8 HOH A 41 741 718 HOH HOH . U 8 HOH A 42 742 773 HOH HOH . U 8 HOH A 43 743 719 HOH HOH . U 8 HOH A 44 744 720 HOH HOH . U 8 HOH A 45 745 771 HOH HOH . U 8 HOH A 46 746 721 HOH HOH . U 8 HOH A 47 747 722 HOH HOH . U 8 HOH A 48 748 763 HOH HOH . U 8 HOH A 49 749 809 HOH HOH . U 8 HOH A 50 750 759 HOH HOH . U 8 HOH A 51 751 804 HOH HOH . U 8 HOH A 52 752 723 HOH HOH . U 8 HOH A 53 753 724 HOH HOH . U 8 HOH A 54 754 799 HOH HOH . U 8 HOH A 55 755 768 HOH HOH . U 8 HOH A 56 756 725 HOH HOH . U 8 HOH A 57 757 793 HOH HOH . U 8 HOH A 58 758 830 HOH HOH . U 8 HOH A 59 759 805 HOH HOH . U 8 HOH A 60 760 795 HOH HOH . U 8 HOH A 61 761 753 HOH HOH . U 8 HOH A 62 762 757 HOH HOH . U 8 HOH A 63 763 834 HOH HOH . U 8 HOH A 64 764 776 HOH HOH . U 8 HOH A 65 765 780 HOH HOH . U 8 HOH A 66 766 798 HOH HOH . U 8 HOH A 67 767 726 HOH HOH . U 8 HOH A 68 768 815 HOH HOH . U 8 HOH A 69 769 797 HOH HOH . U 8 HOH A 70 770 727 HOH HOH . U 8 HOH A 71 771 840 HOH HOH . U 8 HOH A 72 772 756 HOH HOH . U 8 HOH A 73 773 728 HOH HOH . U 8 HOH A 74 774 833 HOH HOH . U 8 HOH A 75 775 770 HOH HOH . U 8 HOH A 76 776 823 HOH HOH . U 8 HOH A 77 777 729 HOH HOH . U 8 HOH A 78 778 844 HOH HOH . U 8 HOH A 79 779 754 HOH HOH . U 8 HOH A 80 780 778 HOH HOH . U 8 HOH A 81 781 730 HOH HOH . U 8 HOH A 82 782 766 HOH HOH . U 8 HOH A 83 783 731 HOH HOH . U 8 HOH A 84 784 732 HOH HOH . U 8 HOH A 85 785 733 HOH HOH . U 8 HOH A 86 786 734 HOH HOH . U 8 HOH A 87 787 755 HOH HOH . U 8 HOH A 88 788 735 HOH HOH . U 8 HOH A 89 789 835 HOH HOH . U 8 HOH A 90 790 837 HOH HOH . U 8 HOH A 91 791 803 HOH HOH . U 8 HOH A 92 792 767 HOH HOH . U 8 HOH A 93 793 736 HOH HOH . U 8 HOH A 94 794 752 HOH HOH . U 8 HOH A 95 795 786 HOH HOH . U 8 HOH A 96 796 801 HOH HOH . U 8 HOH A 97 797 787 HOH HOH . U 8 HOH A 98 798 802 HOH HOH . U 8 HOH A 99 799 822 HOH HOH . U 8 HOH A 100 800 737 HOH HOH . U 8 HOH A 101 801 832 HOH HOH . U 8 HOH A 102 802 788 HOH HOH . U 8 HOH A 103 803 796 HOH HOH . U 8 HOH A 104 804 784 HOH HOH . U 8 HOH A 105 805 829 HOH HOH . U 8 HOH A 106 806 812 HOH HOH . U 8 HOH A 107 807 783 HOH HOH . U 8 HOH A 108 808 738 HOH HOH . U 8 HOH A 109 809 739 HOH HOH . U 8 HOH A 110 810 794 HOH HOH . U 8 HOH A 111 811 818 HOH HOH . U 8 HOH A 112 812 751 HOH HOH . U 8 HOH A 113 813 836 HOH HOH . U 8 HOH A 114 814 782 HOH HOH . U 8 HOH A 115 815 740 HOH HOH . U 8 HOH A 116 816 824 HOH HOH . U 8 HOH A 117 817 772 HOH HOH . U 8 HOH A 118 818 741 HOH HOH . U 8 HOH A 119 819 742 HOH HOH . U 8 HOH A 120 820 831 HOH HOH . U 8 HOH A 121 821 821 HOH HOH . U 8 HOH A 122 822 800 HOH HOH . U 8 HOH A 123 823 790 HOH HOH . U 8 HOH A 124 824 841 HOH HOH . U 8 HOH A 125 825 743 HOH HOH . U 8 HOH A 126 826 811 HOH HOH . U 8 HOH A 127 827 816 HOH HOH . U 8 HOH A 128 828 826 HOH HOH . U 8 HOH A 129 829 744 HOH HOH . U 8 HOH A 130 830 838 HOH HOH . U 8 HOH A 131 831 745 HOH HOH . U 8 HOH A 132 832 746 HOH HOH . U 8 HOH A 133 833 817 HOH HOH . U 8 HOH A 134 834 747 HOH HOH . U 8 HOH A 135 835 748 HOH HOH . U 8 HOH A 136 836 749 HOH HOH . U 8 HOH A 137 837 789 HOH HOH . U 8 HOH A 138 838 813 HOH HOH . U 8 HOH A 139 839 808 HOH HOH . U 8 HOH A 140 840 750 HOH HOH . U 8 HOH A 141 841 819 HOH HOH . U 8 HOH A 142 842 843 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 5 -31.359 47.773 155.712 1 22.33 ? S SO4 604 A 1 HETATM 2 O O1 SO4 . . . E 5 -30.738 46.978 154.678 1 20.46 ? O1 SO4 604 A 1 HETATM 3 O O2 SO4 . . . E 5 -32.741 48.209 155.42 1 27.7 ? O2 SO4 604 A 1 HETATM 4 O O3 SO4 . . . E 5 -31.414 46.971 156.949 1 21.56 ? O3 SO4 604 A 1 HETATM 5 O O4 SO4 . . . E 5 -30.633 49.035 155.838 1 24.21 ? O4 SO4 604 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #