data_4YKL # _model_server_result.job_id OUp_9BIae2IfqMig82-j_A _model_server_result.datetime_utc '2024-10-19 15:25:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ykl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 4YKL # _exptl.entry_id 4YKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YKL _cell.length_a 119.083 _cell.length_b 119.083 _cell.length_c 36.564 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 36.564 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 168 B CYS 200 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A SG CYS 171 B CYS 203 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A NE2 HIS 185 B HIS 217 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc4 A OE1 GLU 189 B GLU 221 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 A DG 1 1_555 B N3 DC 10 A DC 10 6_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 A DG 1 1_555 B O2 DC 10 A DC 10 6_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 A DG 1 1_555 B N4 DC 10 A DC 10 6_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 10 A DC 10 1_555 B N1 DG 1 A DG 1 6_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 10 A DC 10 1_555 B O6 DG 1 A DG 1 6_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 10 A DC 10 1_555 B N2 DG 1 A DG 1 6_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YKL _atom_sites.fract_transf_matrix[1][1] 0.008398 _atom_sites.fract_transf_matrix[1][2] 0.004848 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 301 1 ZN ZN . D 4 GMP B 1 302 1 GMP 5GP . E 5 GOL B 1 303 1 GOL GOL . F 5 GOL B 1 304 2 GOL GOL . G 5 GOL B 1 305 3 GOL GOL . H 5 GOL B 1 306 4 GOL GOL . I 6 CL B 1 307 1 CL CL . J 6 CL B 1 308 1 CL CL . K 7 HOH B 1 401 29 HOH HOH . K 7 HOH B 2 402 42 HOH HOH . K 7 HOH B 3 403 30 HOH HOH . K 7 HOH B 4 404 23 HOH HOH . K 7 HOH B 5 405 39 HOH HOH . K 7 HOH B 6 406 38 HOH HOH . K 7 HOH B 7 407 35 HOH HOH . K 7 HOH B 8 408 37 HOH HOH . K 7 HOH B 9 409 21 HOH HOH . K 7 HOH B 10 410 18 HOH HOH . K 7 HOH B 11 411 47 HOH HOH . K 7 HOH B 12 412 49 HOH HOH . K 7 HOH B 13 413 48 HOH HOH . K 7 HOH B 14 414 1 HOH HOH . K 7 HOH B 15 415 2 HOH HOH . K 7 HOH B 16 416 3 HOH HOH . K 7 HOH B 17 417 5 HOH HOH . K 7 HOH B 18 418 6 HOH HOH . K 7 HOH B 19 419 7 HOH HOH . K 7 HOH B 20 420 8 HOH HOH . K 7 HOH B 21 421 9 HOH HOH . K 7 HOH B 22 422 10 HOH HOH . K 7 HOH B 23 423 11 HOH HOH . K 7 HOH B 24 424 12 HOH HOH . K 7 HOH B 25 425 13 HOH HOH . K 7 HOH B 26 426 14 HOH HOH . K 7 HOH B 27 427 15 HOH HOH . K 7 HOH B 28 428 16 HOH HOH . K 7 HOH B 29 429 17 HOH HOH . K 7 HOH B 30 430 19 HOH HOH . K 7 HOH B 31 431 20 HOH HOH . K 7 HOH B 32 432 22 HOH HOH . K 7 HOH B 33 433 24 HOH HOH . K 7 HOH B 34 434 25 HOH HOH . K 7 HOH B 35 435 27 HOH HOH . K 7 HOH B 36 436 28 HOH HOH . K 7 HOH B 37 437 31 HOH HOH . K 7 HOH B 38 438 32 HOH HOH . K 7 HOH B 39 439 33 HOH HOH . K 7 HOH B 40 440 34 HOH HOH . K 7 HOH B 41 441 40 HOH HOH . K 7 HOH B 42 442 41 HOH HOH . K 7 HOH B 43 443 43 HOH HOH . K 7 HOH B 44 444 44 HOH HOH . K 7 HOH B 45 445 45 HOH HOH . K 7 HOH B 46 446 50 HOH HOH . K 7 HOH B 47 447 53 HOH HOH . L 7 HOH A 1 101 46 HOH HOH . L 7 HOH A 2 102 26 HOH HOH . L 7 HOH A 3 103 52 HOH HOH . L 7 HOH A 4 104 51 HOH HOH . L 7 HOH A 5 105 4 HOH HOH . L 7 HOH A 6 106 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 6 _atom_site.Cartn_x -4.092 _atom_site.Cartn_y 78.569 _atom_site.Cartn_z 16.71 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 307 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #