data_4YKZ # _model_server_result.job_id CH8ev7fpKpPfL33IKH5w3A _model_server_result.datetime_utc '2025-08-31 11:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ykz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YKZ # _exptl.entry_id 4YKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.216 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2,4-dihydroxyphenyl)(3-hydroxyphenyl)methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YKZ _cell.length_a 64.908 _cell.length_b 88.34 _cell.length_c 99.387 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H10 O4' _chem_comp.formula_weight 230.216 _chem_comp.id 4EV _chem_comp.mon_nstd_flag . _chem_comp.name (2,4-dihydroxyphenyl)(3-hydroxyphenyl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 4EV sing 1 n n C1 C6 4EV doub 2 n y C1 C2 4EV sing 3 n y C6 C5 4EV sing 4 n y O2 C7 4EV doub 5 n n C2 C3 4EV doub 6 n y C5 C7 4EV sing 7 n n C5 C4 4EV doub 8 n y C7 C8 4EV sing 9 n n C3 C4 4EV sing 10 n y C8 C9 4EV doub 11 n y C8 C13 4EV sing 12 n y O4 C13 4EV sing 13 n n C9 C10 4EV sing 14 n y C13 C12 4EV doub 15 n y C10 C11 4EV doub 16 n y C12 C11 4EV sing 17 n y C11 O3 4EV sing 18 n n C4 H4 4EV sing 19 n n C3 H3 4EV sing 20 n n C2 H2 4EV sing 21 n n C6 H5 4EV sing 22 n n O1 H1 4EV sing 23 n n O4 H10 4EV sing 24 n n C12 H9 4EV sing 25 n n O3 H8 4EV sing 26 n n C10 H7 4EV sing 27 n n C9 H6 4EV sing 28 n n # _atom_sites.entry_id 4YKZ _atom_sites.fract_transf_matrix[1][1] 0.015406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4EV A 1 301 1 4EV UNL . C 3 HOH A 1 401 195 HOH HOH . C 3 HOH A 2 402 182 HOH HOH . C 3 HOH A 3 403 168 HOH HOH . C 3 HOH A 4 404 128 HOH HOH . C 3 HOH A 5 405 157 HOH HOH . C 3 HOH A 6 406 60 HOH HOH . C 3 HOH A 7 407 43 HOH HOH . C 3 HOH A 8 408 113 HOH HOH . C 3 HOH A 9 409 160 HOH HOH . C 3 HOH A 10 410 117 HOH HOH . C 3 HOH A 11 411 114 HOH HOH . C 3 HOH A 12 412 31 HOH HOH . C 3 HOH A 13 413 22 HOH HOH . C 3 HOH A 14 414 61 HOH HOH . C 3 HOH A 15 415 16 HOH HOH . C 3 HOH A 16 416 42 HOH HOH . C 3 HOH A 17 417 202 HOH HOH . C 3 HOH A 18 418 180 HOH HOH . C 3 HOH A 19 419 201 HOH HOH . C 3 HOH A 20 420 79 HOH HOH . C 3 HOH A 21 421 159 HOH HOH . C 3 HOH A 22 422 18 HOH HOH . C 3 HOH A 23 423 66 HOH HOH . C 3 HOH A 24 424 41 HOH HOH . C 3 HOH A 25 425 148 HOH HOH . C 3 HOH A 26 426 5 HOH HOH . C 3 HOH A 27 427 67 HOH HOH . C 3 HOH A 28 428 15 HOH HOH . C 3 HOH A 29 429 27 HOH HOH . C 3 HOH A 30 430 177 HOH HOH . C 3 HOH A 31 431 118 HOH HOH . C 3 HOH A 32 432 76 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 29 HOH HOH . C 3 HOH A 35 435 116 HOH HOH . C 3 HOH A 36 436 188 HOH HOH . C 3 HOH A 37 437 52 HOH HOH . C 3 HOH A 38 438 36 HOH HOH . C 3 HOH A 39 439 51 HOH HOH . C 3 HOH A 40 440 17 HOH HOH . C 3 HOH A 41 441 197 HOH HOH . C 3 HOH A 42 442 37 HOH HOH . C 3 HOH A 43 443 8 HOH HOH . C 3 HOH A 44 444 32 HOH HOH . C 3 HOH A 45 445 7 HOH HOH . C 3 HOH A 46 446 35 HOH HOH . C 3 HOH A 47 447 75 HOH HOH . C 3 HOH A 48 448 115 HOH HOH . C 3 HOH A 49 449 9 HOH HOH . C 3 HOH A 50 450 192 HOH HOH . C 3 HOH A 51 451 74 HOH HOH . C 3 HOH A 52 452 65 HOH HOH . C 3 HOH A 53 453 106 HOH HOH . C 3 HOH A 54 454 39 HOH HOH . C 3 HOH A 55 455 91 HOH HOH . C 3 HOH A 56 456 187 HOH HOH . C 3 HOH A 57 457 184 HOH HOH . C 3 HOH A 58 458 1 HOH HOH . C 3 HOH A 59 459 55 HOH HOH . C 3 HOH A 60 460 21 HOH HOH . C 3 HOH A 61 461 25 HOH HOH . C 3 HOH A 62 462 175 HOH HOH . C 3 HOH A 63 463 11 HOH HOH . C 3 HOH A 64 464 193 HOH HOH . C 3 HOH A 65 465 185 HOH HOH . C 3 HOH A 66 466 23 HOH HOH . C 3 HOH A 67 467 200 HOH HOH . C 3 HOH A 68 468 72 HOH HOH . C 3 HOH A 69 469 19 HOH HOH . C 3 HOH A 70 470 77 HOH HOH . C 3 HOH A 71 471 179 HOH HOH . C 3 HOH A 72 472 4 HOH HOH . C 3 HOH A 73 473 14 HOH HOH . C 3 HOH A 74 474 6 HOH HOH . C 3 HOH A 75 475 165 HOH HOH . C 3 HOH A 76 476 53 HOH HOH . C 3 HOH A 77 477 146 HOH HOH . C 3 HOH A 78 478 87 HOH HOH . C 3 HOH A 79 479 40 HOH HOH . C 3 HOH A 80 480 138 HOH HOH . C 3 HOH A 81 481 70 HOH HOH . C 3 HOH A 82 482 136 HOH HOH . C 3 HOH A 83 483 104 HOH HOH . C 3 HOH A 84 484 2 HOH HOH . C 3 HOH A 85 485 86 HOH HOH . C 3 HOH A 86 486 71 HOH HOH . C 3 HOH A 87 487 45 HOH HOH . C 3 HOH A 88 488 126 HOH HOH . C 3 HOH A 89 489 90 HOH HOH . C 3 HOH A 90 490 144 HOH HOH . C 3 HOH A 91 491 38 HOH HOH . C 3 HOH A 92 492 83 HOH HOH . C 3 HOH A 93 493 84 HOH HOH . C 3 HOH A 94 494 103 HOH HOH . C 3 HOH A 95 495 50 HOH HOH . C 3 HOH A 96 496 96 HOH HOH . C 3 HOH A 97 497 173 HOH HOH . C 3 HOH A 98 498 12 HOH HOH . C 3 HOH A 99 499 190 HOH HOH . C 3 HOH A 100 500 20 HOH HOH . C 3 HOH A 101 501 161 HOH HOH . C 3 HOH A 102 502 64 HOH HOH . C 3 HOH A 103 503 178 HOH HOH . C 3 HOH A 104 504 102 HOH HOH . C 3 HOH A 105 505 48 HOH HOH . C 3 HOH A 106 506 95 HOH HOH . C 3 HOH A 107 507 26 HOH HOH . C 3 HOH A 108 508 145 HOH HOH . C 3 HOH A 109 509 57 HOH HOH . C 3 HOH A 110 510 119 HOH HOH . C 3 HOH A 111 511 166 HOH HOH . C 3 HOH A 112 512 3 HOH HOH . C 3 HOH A 113 513 127 HOH HOH . C 3 HOH A 114 514 105 HOH HOH . C 3 HOH A 115 515 80 HOH HOH . C 3 HOH A 116 516 158 HOH HOH . C 3 HOH A 117 517 24 HOH HOH . C 3 HOH A 118 518 28 HOH HOH . C 3 HOH A 119 519 143 HOH HOH . C 3 HOH A 120 520 30 HOH HOH . C 3 HOH A 121 521 69 HOH HOH . C 3 HOH A 122 522 13 HOH HOH . C 3 HOH A 123 523 34 HOH HOH . C 3 HOH A 124 524 73 HOH HOH . C 3 HOH A 125 525 81 HOH HOH . C 3 HOH A 126 526 131 HOH HOH . C 3 HOH A 127 527 54 HOH HOH . C 3 HOH A 128 528 10 HOH HOH . C 3 HOH A 129 529 46 HOH HOH . C 3 HOH A 130 530 62 HOH HOH . C 3 HOH A 131 531 123 HOH HOH . C 3 HOH A 132 532 147 HOH HOH . C 3 HOH A 133 533 98 HOH HOH . C 3 HOH A 134 534 183 HOH HOH . C 3 HOH A 135 535 181 HOH HOH . C 3 HOH A 136 536 59 HOH HOH . C 3 HOH A 137 537 140 HOH HOH . C 3 HOH A 138 538 112 HOH HOH . C 3 HOH A 139 539 129 HOH HOH . C 3 HOH A 140 540 101 HOH HOH . C 3 HOH A 141 541 155 HOH HOH . C 3 HOH A 142 542 199 HOH HOH . C 3 HOH A 143 543 58 HOH HOH . C 3 HOH A 144 544 88 HOH HOH . C 3 HOH A 145 545 44 HOH HOH . C 3 HOH A 146 546 171 HOH HOH . C 3 HOH A 147 547 135 HOH HOH . C 3 HOH A 148 548 109 HOH HOH . C 3 HOH A 149 549 97 HOH HOH . C 3 HOH A 150 550 49 HOH HOH . C 3 HOH A 151 551 56 HOH HOH . C 3 HOH A 152 552 63 HOH HOH . C 3 HOH A 153 553 68 HOH HOH . C 3 HOH A 154 554 191 HOH HOH . C 3 HOH A 155 555 196 HOH HOH . C 3 HOH A 156 556 107 HOH HOH . C 3 HOH A 157 557 130 HOH HOH . C 3 HOH A 158 558 47 HOH HOH . C 3 HOH A 159 559 153 HOH HOH . C 3 HOH A 160 560 174 HOH HOH . C 3 HOH A 161 561 94 HOH HOH . C 3 HOH A 162 562 82 HOH HOH . C 3 HOH A 163 563 108 HOH HOH . C 3 HOH A 164 564 139 HOH HOH . C 3 HOH A 165 565 110 HOH HOH . C 3 HOH A 166 566 186 HOH HOH . C 3 HOH A 167 567 125 HOH HOH . C 3 HOH A 168 568 121 HOH HOH . C 3 HOH A 169 569 154 HOH HOH . C 3 HOH A 170 570 133 HOH HOH . C 3 HOH A 171 571 120 HOH HOH . C 3 HOH A 172 572 137 HOH HOH . C 3 HOH A 173 573 198 HOH HOH . C 3 HOH A 174 574 176 HOH HOH . C 3 HOH A 175 575 164 HOH HOH . C 3 HOH A 176 576 100 HOH HOH . C 3 HOH A 177 577 172 HOH HOH . C 3 HOH A 178 578 122 HOH HOH . C 3 HOH A 179 579 189 HOH HOH . C 3 HOH A 180 580 124 HOH HOH . C 3 HOH A 181 581 167 HOH HOH . C 3 HOH A 182 582 111 HOH HOH . C 3 HOH A 183 583 152 HOH HOH . C 3 HOH A 184 584 132 HOH HOH . C 3 HOH A 185 585 93 HOH HOH . C 3 HOH A 186 586 151 HOH HOH . C 3 HOH A 187 587 89 HOH HOH . C 3 HOH A 188 588 169 HOH HOH . C 3 HOH A 189 589 150 HOH HOH . C 3 HOH A 190 590 134 HOH HOH . C 3 HOH A 191 591 163 HOH HOH . C 3 HOH A 192 592 92 HOH HOH . C 3 HOH A 193 593 99 HOH HOH . C 3 HOH A 194 594 170 HOH HOH . C 3 HOH A 195 595 141 HOH HOH . C 3 HOH A 196 596 142 HOH HOH . C 3 HOH A 197 597 156 HOH HOH . C 3 HOH A 198 598 78 HOH HOH . C 3 HOH A 199 599 162 HOH HOH . C 3 HOH A 200 600 194 HOH HOH . C 3 HOH A 201 601 85 HOH HOH . C 3 HOH A 202 602 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 4EV . . . B 2 -2.69 34.103 -27.23 1 29.8 ? O2 4EV 301 A 1 HETATM 2 C C7 4EV . . . B 2 -2.065 34.6 -26.3 1 28.44 ? C7 4EV 301 A 1 HETATM 3 C C5 4EV . . . B 2 -1.529 35.986 -26.407 1 32.64 ? C5 4EV 301 A 1 HETATM 4 C C4 4EV . . . B 2 -1.373 36.776 -25.27 1 34.44 ? C4 4EV 301 A 1 HETATM 5 C C3 4EV . . . B 2 -0.997 38.1 -25.382 1 35.58 ? C3 4EV 301 A 1 HETATM 6 C C2 4EV . . . B 2 -0.756 38.656 -26.627 1 35.18 ? C2 4EV 301 A 1 HETATM 7 C C6 4EV . . . B 2 -1.267 36.537 -27.664 1 34.24 ? C6 4EV 301 A 1 HETATM 8 C C1 4EV . . . B 2 -0.878 37.866 -27.762 1 36.85 ? C1 4EV 301 A 1 HETATM 9 O O1 4EV . . . B 2 -0.583 38.376 -28.998 1 38.94 ? O1 4EV 301 A 1 HETATM 10 C C8 4EV . . . B 2 -1.887 33.821 -25.053 1 26.09 ? C8 4EV 301 A 1 HETATM 11 C C13 4EV . . . B 2 -3.014 33.348 -24.348 1 23.64 ? C13 4EV 301 A 1 HETATM 12 O O4 4EV . . . B 2 -4.274 33.554 -24.824 1 24.47 ? O4 4EV 301 A 1 HETATM 13 C C12 4EV . . . B 2 -2.86 32.653 -23.156 1 23.58 ? C12 4EV 301 A 1 HETATM 14 C C11 4EV . . . B 2 -1.585 32.402 -22.662 1 23.47 ? C11 4EV 301 A 1 HETATM 15 O O3 4EV . . . B 2 -1.401 31.729 -21.484 1 23.98 ? O3 4EV 301 A 1 HETATM 16 C C10 4EV . . . B 2 -0.468 32.846 -23.351 1 27.12 ? C10 4EV 301 A 1 HETATM 17 C C9 4EV . . . B 2 -0.621 33.552 -24.531 1 27.25 ? C9 4EV 301 A 1 HETATM 18 H H4 4EV . . . B 2 -1.557 36.363 -24.278 0 34.51 ? H4 4EV 301 A 1 HETATM 19 H H3 4EV . . . B 2 -0.89 38.712 -24.487 0 35.66 ? H3 4EV 301 A 1 HETATM 20 H H2 4EV . . . B 2 -0.478 39.706 -26.683 0 35.31 ? H2 4EV 301 A 1 HETATM 21 H H5 4EV . . . B 2 -1.373 35.946 -28.571 0 34.25 ? H5 4EV 301 A 1 HETATM 22 H H1 4EV . . . B 2 -0.278 39.316 -28.91 0 38.9 ? H1 4EV 301 A 1 HETATM 23 H H10 4EV . . . B 2 -4.938 33.159 -24.202 0 24.44 ? H10 4EV 301 A 1 HETATM 24 H H9 4EV . . . B 2 -3.722 32.291 -22.598 0 23.4 ? H9 4EV 301 A 1 HETATM 25 H H8 4EV . . . B 2 -2.274 31.479 -21.085 0 24.02 ? H8 4EV 301 A 1 HETATM 26 H H7 4EV . . . B 2 0.538 32.65 -22.983 0 26.87 ? H7 4EV 301 A 1 HETATM 27 H H6 4EV . . . B 2 0.255 33.912 -25.069 0 27.07 ? H6 4EV 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #