data_4YL0 # _model_server_result.job_id 8nm6b1Dv8A-YoV1cvBZseg _model_server_result.datetime_utc '2024-11-08 21:09:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yl0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 4YL0 # _exptl.entry_id 4YL0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YL0 _cell.length_a 76.621 _cell.length_b 76.621 _cell.length_c 123.092 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 54 A TYR 58 1_555 A N CSO 55 A CSO 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CSO 55 A CSO 59 1_555 A N ARG 56 A ARG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YL0 _atom_sites.fract_transf_matrix[1][1] 0.013051 _atom_sites.fract_transf_matrix[1][2] 0.007535 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4DZ A 1 201 1 4DZ SX1 . C 3 GSH A 1 202 1 GSH GTT . D 4 BOG A 1 203 2 BOG BOG . E 4 BOG A 1 204 3 BOG BOG . F 5 PG4 A 1 205 4 PG4 PG4 . G 6 PEG A 1 206 5 PEG PG4 . H 7 HOH A 1 301 6 HOH HOH . H 7 HOH A 2 302 4 HOH HOH . H 7 HOH A 3 303 37 HOH HOH . H 7 HOH A 4 304 70 HOH HOH . H 7 HOH A 5 305 33 HOH HOH . H 7 HOH A 6 306 30 HOH HOH . H 7 HOH A 7 307 75 HOH HOH . H 7 HOH A 8 308 39 HOH HOH . H 7 HOH A 9 309 12 HOH HOH . H 7 HOH A 10 310 23 HOH HOH . H 7 HOH A 11 311 31 HOH HOH . H 7 HOH A 12 312 86 HOH HOH . H 7 HOH A 13 313 15 HOH HOH . H 7 HOH A 14 314 22 HOH HOH . H 7 HOH A 15 315 16 HOH HOH . H 7 HOH A 16 316 17 HOH HOH . H 7 HOH A 17 317 103 HOH HOH . H 7 HOH A 18 318 29 HOH HOH . H 7 HOH A 19 319 26 HOH HOH . H 7 HOH A 20 320 19 HOH HOH . H 7 HOH A 21 321 38 HOH HOH . H 7 HOH A 22 322 53 HOH HOH . H 7 HOH A 23 323 21 HOH HOH . H 7 HOH A 24 324 60 HOH HOH . H 7 HOH A 25 325 111 HOH HOH . H 7 HOH A 26 326 85 HOH HOH . H 7 HOH A 27 327 24 HOH HOH . H 7 HOH A 28 328 52 HOH HOH . H 7 HOH A 29 329 48 HOH HOH . H 7 HOH A 30 330 9 HOH HOH . H 7 HOH A 31 331 34 HOH HOH . H 7 HOH A 32 332 124 HOH HOH . H 7 HOH A 33 333 28 HOH HOH . H 7 HOH A 34 334 66 HOH HOH . H 7 HOH A 35 335 107 HOH HOH . H 7 HOH A 36 336 8 HOH HOH . H 7 HOH A 37 337 13 HOH HOH . H 7 HOH A 38 338 58 HOH HOH . H 7 HOH A 39 339 14 HOH HOH . H 7 HOH A 40 340 42 HOH HOH . H 7 HOH A 41 341 56 HOH HOH . H 7 HOH A 42 342 41 HOH HOH . H 7 HOH A 43 343 32 HOH HOH . H 7 HOH A 44 344 125 HOH HOH . H 7 HOH A 45 345 115 HOH HOH . H 7 HOH A 46 346 112 HOH HOH . H 7 HOH A 47 347 64 HOH HOH . H 7 HOH A 48 348 65 HOH HOH . H 7 HOH A 49 349 94 HOH HOH . H 7 HOH A 50 350 36 HOH HOH . H 7 HOH A 51 351 101 HOH HOH . H 7 HOH A 52 352 63 HOH HOH . H 7 HOH A 53 353 97 HOH HOH . H 7 HOH A 54 354 68 HOH HOH . H 7 HOH A 55 355 114 HOH HOH . H 7 HOH A 56 356 2 HOH HOH . H 7 HOH A 57 357 62 HOH HOH . H 7 HOH A 58 358 71 HOH HOH . H 7 HOH A 59 359 81 HOH HOH . H 7 HOH A 60 360 122 HOH HOH . H 7 HOH A 61 361 105 HOH HOH . H 7 HOH A 62 362 46 HOH HOH . H 7 HOH A 63 363 83 HOH HOH . H 7 HOH A 64 364 116 HOH HOH . H 7 HOH A 65 365 7 HOH HOH . H 7 HOH A 66 366 1 HOH HOH . H 7 HOH A 67 367 3 HOH HOH . H 7 HOH A 68 368 5 HOH HOH . H 7 HOH A 69 369 10 HOH HOH . H 7 HOH A 70 370 11 HOH HOH . H 7 HOH A 71 371 18 HOH HOH . H 7 HOH A 72 372 20 HOH HOH . H 7 HOH A 73 373 25 HOH HOH . H 7 HOH A 74 374 27 HOH HOH . H 7 HOH A 75 375 35 HOH HOH . H 7 HOH A 76 376 40 HOH HOH . H 7 HOH A 77 377 43 HOH HOH . H 7 HOH A 78 378 44 HOH HOH . H 7 HOH A 79 379 45 HOH HOH . H 7 HOH A 80 380 47 HOH HOH . H 7 HOH A 81 381 49 HOH HOH . H 7 HOH A 82 382 50 HOH HOH . H 7 HOH A 83 383 51 HOH HOH . H 7 HOH A 84 384 54 HOH HOH . H 7 HOH A 85 385 55 HOH HOH . H 7 HOH A 86 386 57 HOH HOH . H 7 HOH A 87 387 59 HOH HOH . H 7 HOH A 88 388 61 HOH HOH . H 7 HOH A 89 389 67 HOH HOH . H 7 HOH A 90 390 69 HOH HOH . H 7 HOH A 91 391 72 HOH HOH . H 7 HOH A 92 392 73 HOH HOH . H 7 HOH A 93 393 74 HOH HOH . H 7 HOH A 94 394 76 HOH HOH . H 7 HOH A 95 395 77 HOH HOH . H 7 HOH A 96 396 78 HOH HOH . H 7 HOH A 97 397 79 HOH HOH . H 7 HOH A 98 398 80 HOH HOH . H 7 HOH A 99 399 82 HOH HOH . H 7 HOH A 100 400 84 HOH HOH . H 7 HOH A 101 401 87 HOH HOH . H 7 HOH A 102 402 88 HOH HOH . H 7 HOH A 103 403 89 HOH HOH . H 7 HOH A 104 404 90 HOH HOH . H 7 HOH A 105 405 91 HOH HOH . H 7 HOH A 106 406 92 HOH HOH . H 7 HOH A 107 407 93 HOH HOH . H 7 HOH A 108 408 95 HOH HOH . H 7 HOH A 109 409 96 HOH HOH . H 7 HOH A 110 410 98 HOH HOH . H 7 HOH A 111 411 99 HOH HOH . H 7 HOH A 112 412 100 HOH HOH . H 7 HOH A 113 413 102 HOH HOH . H 7 HOH A 114 414 104 HOH HOH . H 7 HOH A 115 415 106 HOH HOH . H 7 HOH A 116 416 108 HOH HOH . H 7 HOH A 117 417 109 HOH HOH . H 7 HOH A 118 418 110 HOH HOH . H 7 HOH A 119 419 113 HOH HOH . H 7 HOH A 120 420 117 HOH HOH . H 7 HOH A 121 421 118 HOH HOH . H 7 HOH A 122 422 119 HOH HOH . H 7 HOH A 123 423 120 HOH HOH . H 7 HOH A 124 424 121 HOH HOH . H 7 HOH A 125 425 123 HOH HOH . H 7 HOH A 126 426 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . F 5 14.285 18.942 7.921 1 100.05 ? O1 PG4 205 A 1 HETATM 2 C C1 PG4 . . . F 5 14.787 18.304 9.101 1 103.99 ? C1 PG4 205 A 1 HETATM 3 C C2 PG4 . . . F 5 14.404 19.125 10.327 1 112.32 ? C2 PG4 205 A 1 HETATM 4 O O2 PG4 . . . F 5 13.762 18.286 11.287 1 100.97 ? O2 PG4 205 A 1 HETATM 5 C C3 PG4 . . . F 5 14.392 18.36 12.566 1 99.74 ? C3 PG4 205 A 1 HETATM 6 C C4 PG4 . . . F 5 14.144 17.071 13.342 1 71.52 ? C4 PG4 205 A 1 HETATM 7 O O3 PG4 . . . F 5 14.523 15.946 12.55 1 66.14 ? O3 PG4 205 A 1 HETATM 8 C C5 PG4 . . . F 5 15.423 15.08 13.243 1 58.12 ? C5 PG4 205 A 1 HETATM 9 C C6 PG4 . . . F 5 15.875 13.949 12.321 1 44.74 ? C6 PG4 205 A 1 HETATM 10 O O4 PG4 . . . F 5 16.254 14.474 11.049 1 67.56 ? O4 PG4 205 A 1 HETATM 11 C C7 PG4 . . . F 5 17.661 14.388 10.822 1 90.49 ? C7 PG4 205 A 1 HETATM 12 C C8 PG4 . . . F 5 18.131 15.612 10.042 1 87.92 ? C8 PG4 205 A 1 HETATM 13 O O5 PG4 . . . F 5 17.431 15.687 8.795 1 85.91 ? O5 PG4 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #