data_4YL1 # _model_server_result.job_id OQSHr1DGjInpx-SNctO71A _model_server_result.datetime_utc '2024-12-15 16:47:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yl1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4YL1 # _exptl.entry_id 4YL1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.535 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(4-tert-butylphenyl)-1-[4-(propan-2-yloxy)phenyl]-1H-indole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YL1 _cell.length_a 76.585 _cell.length_b 76.585 _cell.length_c 123.617 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H29 N O3' _chem_comp.formula_weight 427.535 _chem_comp.id 4U8 _chem_comp.mon_nstd_flag . _chem_comp.name '5-(4-tert-butylphenyl)-1-[4-(propan-2-yloxy)phenyl]-1H-indole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 4U8 sing 1 n n C11 C9 4U8 sing 2 n n C12 C9 4U8 sing 3 n n C9 C6 4U8 sing 4 n n C6 C7 4U8 doub 5 n y C6 C5 4U8 sing 6 n y C7 C8 4U8 sing 7 n y C5 C4 4U8 doub 8 n y C8 C3 4U8 doub 9 n y C4 C3 4U8 sing 10 n y C3 C2 4U8 sing 11 n n C2 C1 4U8 doub 12 n y C2 C13 4U8 sing 13 n y C1 C18 4U8 sing 14 n y C13 C14 4U8 doub 15 n y C18 C17 4U8 doub 16 n y C14 C17 4U8 sing 17 n y C14 C15 4U8 sing 18 n y C17 N1 4U8 sing 19 n y C15 C16 4U8 doub 20 n y N1 C16 4U8 sing 21 n y N1 C19 4U8 sing 22 n n C16 C28 4U8 sing 23 n n C20 C19 4U8 doub 24 n y C20 C21 4U8 sing 25 n y C19 C24 4U8 sing 26 n y C21 C22 4U8 doub 27 n y C24 C23 4U8 doub 28 n y C28 O3 4U8 doub 29 n n C28 O2 4U8 sing 30 n n C22 C23 4U8 sing 31 n y C22 O1 4U8 sing 32 n n C25 O1 4U8 sing 33 n n C25 C26 4U8 sing 34 n n C25 C27 4U8 sing 35 n n C7 H1 4U8 sing 36 n n O2 H2 4U8 sing 37 n n C1 H3 4U8 sing 38 n n C5 H4 4U8 sing 39 n n C4 H5 4U8 sing 40 n n C15 H6 4U8 sing 41 n n C24 H7 4U8 sing 42 n n C23 H8 4U8 sing 43 n n C25 H9 4U8 sing 44 n n C27 H10 4U8 sing 45 n n C27 H11 4U8 sing 46 n n C27 H12 4U8 sing 47 n n C26 H13 4U8 sing 48 n n C26 H14 4U8 sing 49 n n C26 H15 4U8 sing 50 n n C21 H16 4U8 sing 51 n n C20 H17 4U8 sing 52 n n C18 H18 4U8 sing 53 n n C13 H19 4U8 sing 54 n n C8 H20 4U8 sing 55 n n C12 H21 4U8 sing 56 n n C12 H22 4U8 sing 57 n n C12 H23 4U8 sing 58 n n C11 H24 4U8 sing 59 n n C11 H25 4U8 sing 60 n n C11 H26 4U8 sing 61 n n C10 H27 4U8 sing 62 n n C10 H28 4U8 sing 63 n n C10 H29 4U8 sing 64 n n # _atom_sites.entry_id 4YL1 _atom_sites.fract_transf_matrix[1][1] 0.013057 _atom_sites.fract_transf_matrix[1][2] 0.007539 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4U8 A 1 201 1 4U8 SX1 . C 3 PEG A 1 202 1 PEG PG4 . D 4 GSH A 1 203 2 GSH GTT . E 5 BOG A 1 204 3 BOG BOG . F 5 BOG A 1 205 4 BOG BOG . G 6 PG4 A 1 206 5 PG4 PG4 . H 7 HOH A 1 301 33 HOH HOH . H 7 HOH A 2 302 109 HOH HOH . H 7 HOH A 3 303 41 HOH HOH . H 7 HOH A 4 304 14 HOH HOH . H 7 HOH A 5 305 23 HOH HOH . H 7 HOH A 6 306 62 HOH HOH . H 7 HOH A 7 307 34 HOH HOH . H 7 HOH A 8 308 95 HOH HOH . H 7 HOH A 9 309 4 HOH HOH . H 7 HOH A 10 310 59 HOH HOH . H 7 HOH A 11 311 17 HOH HOH . H 7 HOH A 12 312 5 HOH HOH . H 7 HOH A 13 313 57 HOH HOH . H 7 HOH A 14 314 29 HOH HOH . H 7 HOH A 15 315 65 HOH HOH . H 7 HOH A 16 316 48 HOH HOH . H 7 HOH A 17 317 7 HOH HOH . H 7 HOH A 18 318 56 HOH HOH . H 7 HOH A 19 319 16 HOH HOH . H 7 HOH A 20 320 22 HOH HOH . H 7 HOH A 21 321 8 HOH HOH . H 7 HOH A 22 322 30 HOH HOH . H 7 HOH A 23 323 11 HOH HOH . H 7 HOH A 24 324 31 HOH HOH . H 7 HOH A 25 325 9 HOH HOH . H 7 HOH A 26 326 93 HOH HOH . H 7 HOH A 27 327 45 HOH HOH . H 7 HOH A 28 328 26 HOH HOH . H 7 HOH A 29 329 49 HOH HOH . H 7 HOH A 30 330 10 HOH HOH . H 7 HOH A 31 331 106 HOH HOH . H 7 HOH A 32 332 6 HOH HOH . H 7 HOH A 33 333 37 HOH HOH . H 7 HOH A 34 334 52 HOH HOH . H 7 HOH A 35 335 40 HOH HOH . H 7 HOH A 36 336 35 HOH HOH . H 7 HOH A 37 337 54 HOH HOH . H 7 HOH A 38 338 39 HOH HOH . H 7 HOH A 39 339 69 HOH HOH . H 7 HOH A 40 340 32 HOH HOH . H 7 HOH A 41 341 61 HOH HOH . H 7 HOH A 42 342 21 HOH HOH . H 7 HOH A 43 343 25 HOH HOH . H 7 HOH A 44 344 74 HOH HOH . H 7 HOH A 45 345 64 HOH HOH . H 7 HOH A 46 346 58 HOH HOH . H 7 HOH A 47 347 12 HOH HOH . H 7 HOH A 48 348 19 HOH HOH . H 7 HOH A 49 349 83 HOH HOH . H 7 HOH A 50 350 53 HOH HOH . H 7 HOH A 51 351 75 HOH HOH . H 7 HOH A 52 352 67 HOH HOH . H 7 HOH A 53 353 88 HOH HOH . H 7 HOH A 54 354 77 HOH HOH . H 7 HOH A 55 355 43 HOH HOH . H 7 HOH A 56 356 117 HOH HOH . H 7 HOH A 57 357 55 HOH HOH . H 7 HOH A 58 358 20 HOH HOH . H 7 HOH A 59 359 44 HOH HOH . H 7 HOH A 60 360 72 HOH HOH . H 7 HOH A 61 361 80 HOH HOH . H 7 HOH A 62 362 18 HOH HOH . H 7 HOH A 63 363 42 HOH HOH . H 7 HOH A 64 364 76 HOH HOH . H 7 HOH A 65 365 115 HOH HOH . H 7 HOH A 66 366 47 HOH HOH . H 7 HOH A 67 367 84 HOH HOH . H 7 HOH A 68 368 89 HOH HOH . H 7 HOH A 69 369 27 HOH HOH . H 7 HOH A 70 370 13 HOH HOH . H 7 HOH A 71 371 24 HOH HOH . H 7 HOH A 72 372 68 HOH HOH . H 7 HOH A 73 373 15 HOH HOH . H 7 HOH A 74 374 51 HOH HOH . H 7 HOH A 75 375 114 HOH HOH . H 7 HOH A 76 376 96 HOH HOH . H 7 HOH A 77 377 28 HOH HOH . H 7 HOH A 78 378 79 HOH HOH . H 7 HOH A 79 379 38 HOH HOH . H 7 HOH A 80 380 107 HOH HOH . H 7 HOH A 81 381 116 HOH HOH . H 7 HOH A 82 382 112 HOH HOH . H 7 HOH A 83 383 103 HOH HOH . H 7 HOH A 84 384 101 HOH HOH . H 7 HOH A 85 385 70 HOH HOH . H 7 HOH A 86 386 98 HOH HOH . H 7 HOH A 87 387 50 HOH HOH . H 7 HOH A 88 388 81 HOH HOH . H 7 HOH A 89 389 46 HOH HOH . H 7 HOH A 90 390 71 HOH HOH . H 7 HOH A 91 391 87 HOH HOH . H 7 HOH A 92 392 99 HOH HOH . H 7 HOH A 93 393 94 HOH HOH . H 7 HOH A 94 394 3 HOH HOH . H 7 HOH A 95 395 1 HOH HOH . H 7 HOH A 96 396 60 HOH HOH . H 7 HOH A 97 397 113 HOH HOH . H 7 HOH A 98 398 91 HOH HOH . H 7 HOH A 99 399 78 HOH HOH . H 7 HOH A 100 400 86 HOH HOH . H 7 HOH A 101 401 36 HOH HOH . H 7 HOH A 102 402 108 HOH HOH . H 7 HOH A 103 403 92 HOH HOH . H 7 HOH A 104 404 102 HOH HOH . H 7 HOH A 105 405 66 HOH HOH . H 7 HOH A 106 406 105 HOH HOH . H 7 HOH A 107 407 2 HOH HOH . H 7 HOH A 108 408 111 HOH HOH . H 7 HOH A 109 409 90 HOH HOH . H 7 HOH A 110 410 63 HOH HOH . H 7 HOH A 111 411 104 HOH HOH . H 7 HOH A 112 412 85 HOH HOH . H 7 HOH A 113 413 97 HOH HOH . H 7 HOH A 114 414 82 HOH HOH . H 7 HOH A 115 415 100 HOH HOH . H 7 HOH A 116 416 73 HOH HOH . H 7 HOH A 117 417 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 4U8 . . . B 2 11.533 15.597 33.716 1 27.17 ? O1 4U8 201 A 1 HETATM 2 C C7 4U8 . . . B 2 17.513 16.689 23.199 1 35.85 ? C7 4U8 201 A 1 HETATM 3 O O2 4U8 . . . B 2 17.161 17.211 33.731 1 28.03 ? O2 4U8 201 A 1 HETATM 4 C C6 4U8 . . . B 2 18.147 17.845 22.69 1 44.67 ? C6 4U8 201 A 1 HETATM 5 C C1 4U8 . . . B 2 15.813 16.866 27.257 1 30.03 ? C1 4U8 201 A 1 HETATM 6 N N1 4U8 . . . B 2 16.168 17.301 31.005 1 28.4 ? N1 4U8 201 A 1 HETATM 7 C C5 4U8 . . . B 2 18.388 18.886 23.611 1 66.4 ? C5 4U8 201 A 1 HETATM 8 C C4 4U8 . . . B 2 18.021 18.775 24.963 1 47.7 ? C4 4U8 201 A 1 HETATM 9 C C3 4U8 . . . B 2 17.393 17.619 25.458 1 40.59 ? C3 4U8 201 A 1 HETATM 10 C C2 4U8 . . . B 2 17.008 17.5 26.878 1 31.92 ? C2 4U8 201 A 1 HETATM 11 O O3 4U8 . . . B 2 18.36 19.06 33.338 1 37.33 ? O3 4U8 201 A 1 HETATM 12 C C28 4U8 . . . B 2 17.596 18.206 32.921 1 32.93 ? C28 4U8 201 A 1 HETATM 13 C C16 4U8 . . . B 2 17.294 17.952 31.529 1 28.41 ? C16 4U8 201 A 1 HETATM 14 C C15 4U8 . . . B 2 18.091 18.324 30.457 1 29.54 ? C15 4U8 201 A 1 HETATM 15 C C19 4U8 . . . B 2 14.989 16.895 31.707 1 28.39 ? C19 4U8 201 A 1 HETATM 16 C C24 4U8 . . . B 2 14.246 17.817 32.46 1 30.97 ? C24 4U8 201 A 1 HETATM 17 C C23 4U8 . . . B 2 13.089 17.406 33.143 1 31.8 ? C23 4U8 201 A 1 HETATM 18 C C22 4U8 . . . B 2 12.652 16.078 33.079 1 29.02 ? C22 4U8 201 A 1 HETATM 19 C C25 4U8 . . . B 2 11.09 14.23 33.652 1 23.96 ? C25 4U8 201 A 1 HETATM 20 C C27 4U8 . . . B 2 11.808 13.379 34.698 1 27.38 ? C27 4U8 201 A 1 HETATM 21 C C26 4U8 . . . B 2 9.595 14.258 33.961 1 32.17 ? C26 4U8 201 A 1 HETATM 22 C C21 4U8 . . . B 2 13.398 15.163 32.318 1 25.81 ? C21 4U8 201 A 1 HETATM 23 C C20 4U8 . . . B 2 14.557 15.562 31.64 1 27.54 ? C20 4U8 201 A 1 HETATM 24 C C17 4U8 . . . B 2 16.28 17.272 29.606 1 29.97 ? C17 4U8 201 A 1 HETATM 25 C C18 4U8 . . . B 2 15.436 16.744 28.603 1 28.83 ? C18 4U8 201 A 1 HETATM 26 C C14 4U8 . . . B 2 17.476 17.908 29.258 1 28.62 ? C14 4U8 201 A 1 HETATM 27 C C13 4U8 . . . B 2 17.837 18.02 27.895 1 31.38 ? C13 4U8 201 A 1 HETATM 28 C C8 4U8 . . . B 2 17.149 16.577 24.549 1 33.06 ? C8 4U8 201 A 1 HETATM 29 C C9 4U8 . . . B 2 18.541 17.942 21.195 1 51.2 ? C9 4U8 201 A 1 HETATM 30 C C12 4U8 . . . B 2 19.937 18.558 20.937 1 60.16 ? C12 4U8 201 A 1 HETATM 31 C C11 4U8 . . . B 2 18.565 16.546 20.528 1 63.13 ? C11 4U8 201 A 1 HETATM 32 C C10 4U8 . . . B 2 17.521 18.831 20.45 1 56.64 ? C10 4U8 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #