data_4YL3 # _model_server_result.job_id UBpEQkK7xzPIbsG6FDeDBg _model_server_result.datetime_utc '2024-11-14 18:43:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4YL3 # _exptl.entry_id 4YL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 520.704 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[4-bromo-2-(2-chloro-6-fluorophenyl)-1H-imidazol-5-yl]-2-{[4-(trifluoromethyl)phenyl]ethynyl}pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YL3 _cell.length_a 76.434 _cell.length_b 76.434 _cell.length_c 123.264 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H11 Br Cl F4 N3' _chem_comp.formula_weight 520.704 _chem_comp.id 4U9 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[4-bromo-2-(2-chloro-6-fluorophenyl)-1H-imidazol-5-yl]-2-{[4-(trifluoromethyl)phenyl]ethynyl}pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C13 4U9 sing 1 n n F2 C13 4U9 sing 2 n n F3 C13 4U9 sing 3 n n C13 C12 4U9 sing 4 n n C12 C14 4U9 doub 5 n y C12 C11 4U9 sing 6 n y C14 C15 4U9 sing 7 n y C11 C10 4U9 doub 8 n y C15 C9 4U9 doub 9 n y C10 C9 4U9 sing 10 n y C9 C8 4U9 sing 11 n n C8 C7 4U9 trip 12 n n C7 C6 4U9 sing 13 n n C6 N3 4U9 doub 14 n y C6 C16 4U9 sing 15 n y N3 C5 4U9 sing 16 n y C16 C17 4U9 doub 17 n y C5 C4 4U9 doub 18 n y C17 C4 4U9 sing 19 n y C4 C2 4U9 sing 20 n n C2 N1 4U9 sing 21 n y C2 C3 4U9 doub 22 n y N1 C1 4U9 sing 23 n y F4 C19 4U9 sing 24 n n C3 BR1 4U9 sing 25 n n C3 N2 4U9 sing 26 n y C1 C18 4U9 sing 27 n n C1 N2 4U9 doub 28 n y C19 C18 4U9 doub 29 n y C19 C20 4U9 sing 30 n y C18 C23 4U9 sing 31 n y C20 C21 4U9 doub 32 n y C23 CL1 4U9 sing 33 n n C23 C22 4U9 doub 34 n y C21 C22 4U9 sing 35 n y N1 H1 4U9 sing 36 n n C5 H2 4U9 sing 37 n n C22 H3 4U9 sing 38 n n C21 H4 4U9 sing 39 n n C20 H5 4U9 sing 40 n n C17 H7 4U9 sing 41 n n C16 H8 4U9 sing 42 n n C15 H9 4U9 sing 43 n n C14 H10 4U9 sing 44 n n C11 H11 4U9 sing 45 n n C10 H12 4U9 sing 46 n n # _atom_sites.entry_id 4YL3 _atom_sites.fract_transf_matrix[1][1] 0.013083 _atom_sites.fract_transf_matrix[1][2] 0.007554 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4U9 A 1 201 1 4U9 4U9 . C 3 GSH A 1 202 1 GSH GTT . D 4 BOG A 1 203 2 BOG BOG . E 4 BOG A 1 204 3 BOG BOG . F 5 PG4 A 1 205 4 PG4 PG4 . G 6 HOH A 1 301 58 HOH HOH . G 6 HOH A 2 302 124 HOH HOH . G 6 HOH A 3 303 90 HOH HOH . G 6 HOH A 4 304 1 HOH HOH . G 6 HOH A 5 305 69 HOH HOH . G 6 HOH A 6 306 18 HOH HOH . G 6 HOH A 7 307 22 HOH HOH . G 6 HOH A 8 308 26 HOH HOH . G 6 HOH A 9 309 24 HOH HOH . G 6 HOH A 10 310 35 HOH HOH . G 6 HOH A 11 311 108 HOH HOH . G 6 HOH A 12 312 17 HOH HOH . G 6 HOH A 13 313 23 HOH HOH . G 6 HOH A 14 314 72 HOH HOH . G 6 HOH A 15 315 29 HOH HOH . G 6 HOH A 16 316 10 HOH HOH . G 6 HOH A 17 317 51 HOH HOH . G 6 HOH A 18 318 73 HOH HOH . G 6 HOH A 19 319 82 HOH HOH . G 6 HOH A 20 320 36 HOH HOH . G 6 HOH A 21 321 27 HOH HOH . G 6 HOH A 22 322 5 HOH HOH . G 6 HOH A 23 323 7 HOH HOH . G 6 HOH A 24 324 61 HOH HOH . G 6 HOH A 25 325 55 HOH HOH . G 6 HOH A 26 326 70 HOH HOH . G 6 HOH A 27 327 43 HOH HOH . G 6 HOH A 28 328 13 HOH HOH . G 6 HOH A 29 329 85 HOH HOH . G 6 HOH A 30 330 42 HOH HOH . G 6 HOH A 31 331 99 HOH HOH . G 6 HOH A 32 332 80 HOH HOH . G 6 HOH A 33 333 8 HOH HOH . G 6 HOH A 34 334 6 HOH HOH . G 6 HOH A 35 335 30 HOH HOH . G 6 HOH A 36 336 53 HOH HOH . G 6 HOH A 37 337 19 HOH HOH . G 6 HOH A 38 338 16 HOH HOH . G 6 HOH A 39 339 49 HOH HOH . G 6 HOH A 40 340 75 HOH HOH . G 6 HOH A 41 341 84 HOH HOH . G 6 HOH A 42 342 20 HOH HOH . G 6 HOH A 43 343 9 HOH HOH . G 6 HOH A 44 344 50 HOH HOH . G 6 HOH A 45 345 39 HOH HOH . G 6 HOH A 46 346 138 HOH HOH . G 6 HOH A 47 347 4 HOH HOH . G 6 HOH A 48 348 44 HOH HOH . G 6 HOH A 49 349 38 HOH HOH . G 6 HOH A 50 350 33 HOH HOH . G 6 HOH A 51 351 41 HOH HOH . G 6 HOH A 52 352 11 HOH HOH . G 6 HOH A 53 353 54 HOH HOH . G 6 HOH A 54 354 21 HOH HOH . G 6 HOH A 55 355 37 HOH HOH . G 6 HOH A 56 356 47 HOH HOH . G 6 HOH A 57 357 12 HOH HOH . G 6 HOH A 58 358 64 HOH HOH . G 6 HOH A 59 359 59 HOH HOH . G 6 HOH A 60 360 52 HOH HOH . G 6 HOH A 61 361 15 HOH HOH . G 6 HOH A 62 362 31 HOH HOH . G 6 HOH A 63 363 67 HOH HOH . G 6 HOH A 64 364 81 HOH HOH . G 6 HOH A 65 365 71 HOH HOH . G 6 HOH A 66 366 40 HOH HOH . G 6 HOH A 67 367 28 HOH HOH . G 6 HOH A 68 368 77 HOH HOH . G 6 HOH A 69 369 107 HOH HOH . G 6 HOH A 70 370 126 HOH HOH . G 6 HOH A 71 371 125 HOH HOH . G 6 HOH A 72 372 62 HOH HOH . G 6 HOH A 73 373 25 HOH HOH . G 6 HOH A 74 374 101 HOH HOH . G 6 HOH A 75 375 79 HOH HOH . G 6 HOH A 76 376 60 HOH HOH . G 6 HOH A 77 377 129 HOH HOH . G 6 HOH A 78 378 86 HOH HOH . G 6 HOH A 79 379 78 HOH HOH . G 6 HOH A 80 380 76 HOH HOH . G 6 HOH A 81 381 14 HOH HOH . G 6 HOH A 82 382 48 HOH HOH . G 6 HOH A 83 383 32 HOH HOH . G 6 HOH A 84 384 46 HOH HOH . G 6 HOH A 85 385 45 HOH HOH . G 6 HOH A 86 386 57 HOH HOH . G 6 HOH A 87 387 66 HOH HOH . G 6 HOH A 88 388 98 HOH HOH . G 6 HOH A 89 389 127 HOH HOH . G 6 HOH A 90 390 97 HOH HOH . G 6 HOH A 91 391 110 HOH HOH . G 6 HOH A 92 392 133 HOH HOH . G 6 HOH A 93 393 115 HOH HOH . G 6 HOH A 94 394 122 HOH HOH . G 6 HOH A 95 395 106 HOH HOH . G 6 HOH A 96 396 94 HOH HOH . G 6 HOH A 97 397 100 HOH HOH . G 6 HOH A 98 398 102 HOH HOH . G 6 HOH A 99 399 56 HOH HOH . G 6 HOH A 100 400 63 HOH HOH . G 6 HOH A 101 401 136 HOH HOH . G 6 HOH A 102 402 140 HOH HOH . G 6 HOH A 103 403 134 HOH HOH . G 6 HOH A 104 404 68 HOH HOH . G 6 HOH A 105 405 103 HOH HOH . G 6 HOH A 106 406 131 HOH HOH . G 6 HOH A 107 407 111 HOH HOH . G 6 HOH A 108 408 88 HOH HOH . G 6 HOH A 109 409 95 HOH HOH . G 6 HOH A 110 410 83 HOH HOH . G 6 HOH A 111 411 2 HOH HOH . G 6 HOH A 112 412 117 HOH HOH . G 6 HOH A 113 413 89 HOH HOH . G 6 HOH A 114 414 92 HOH HOH . G 6 HOH A 115 415 74 HOH HOH . G 6 HOH A 116 416 112 HOH HOH . G 6 HOH A 117 417 128 HOH HOH . G 6 HOH A 118 418 137 HOH HOH . G 6 HOH A 119 419 109 HOH HOH . G 6 HOH A 120 420 34 HOH HOH . G 6 HOH A 121 421 120 HOH HOH . G 6 HOH A 122 422 104 HOH HOH . G 6 HOH A 123 423 116 HOH HOH . G 6 HOH A 124 424 93 HOH HOH . G 6 HOH A 125 425 123 HOH HOH . G 6 HOH A 126 426 139 HOH HOH . G 6 HOH A 127 427 114 HOH HOH . G 6 HOH A 128 428 65 HOH HOH . G 6 HOH A 129 429 3 HOH HOH . G 6 HOH A 130 430 130 HOH HOH . G 6 HOH A 131 431 87 HOH HOH . G 6 HOH A 132 432 96 HOH HOH . G 6 HOH A 133 433 119 HOH HOH . G 6 HOH A 134 434 113 HOH HOH . G 6 HOH A 135 435 91 HOH HOH . G 6 HOH A 136 436 105 HOH HOH . G 6 HOH A 137 437 118 HOH HOH . G 6 HOH A 138 438 121 HOH HOH . G 6 HOH A 139 439 135 HOH HOH . G 6 HOH A 140 440 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 4U9 . . . B 2 16.605 16.95 25.875 1 25.52 ? C7 4U9 201 A 1 HETATM 2 C C6 4U9 . . . B 2 16.178 16.789 27.22 1 24.06 ? C6 4U9 201 A 1 HETATM 3 C C1 4U9 . . . B 2 13.339 15.289 32.58 1 16.99 ? C1 4U9 201 A 1 HETATM 4 N N1 4U9 . . . B 2 13.591 15.361 31.293 1 19.86 ? N1 4U9 201 A 1 HETATM 5 C C5 4U9 . . . B 2 14.633 15.849 28.638 1 21.03 ? C5 4U9 201 A 1 HETATM 6 C C4 4U9 . . . B 2 15.252 16.361 29.782 1 21.16 ? C4 4U9 201 A 1 HETATM 7 BR BR1 4U9 . . . B 2 16.611 17.548 32.948 0.6 20.5 ? BR1 4U9 201 A 1 HETATM 8 C C3 4U9 . . . B 2 15.161 16.511 32.367 1 19.95 ? C3 4U9 201 A 1 HETATM 9 C C2 4U9 . . . B 2 14.73 16.113 31.117 1 21.2 ? C2 4U9 201 A 1 HETATM 10 CL CL1 4U9 . . . B 2 14.056 12.807 34.35 1 23.21 ? CL1 4U9 201 A 1 HETATM 11 C C23 4U9 . . . B 2 12.461 13.426 34.011 1 20.32 ? C23 4U9 201 A 1 HETATM 12 C C22 4U9 . . . B 2 11.36 12.751 34.58 1 19.55 ? C22 4U9 201 A 1 HETATM 13 C C21 4U9 . . . B 2 10.052 13.203 34.353 1 20.61 ? C21 4U9 201 A 1 HETATM 14 C C20 4U9 . . . B 2 9.829 14.328 33.558 1 19.92 ? C20 4U9 201 A 1 HETATM 15 C C19 4U9 . . . B 2 10.92 14.993 32.992 1 20.94 ? C19 4U9 201 A 1 HETATM 16 F F4 4U9 . . . B 2 10.7 16.074 32.223 1 24.48 ? F4 4U9 201 A 1 HETATM 17 C C18 4U9 . . . B 2 12.239 14.567 33.212 1 19.53 ? C18 4U9 201 A 1 HETATM 18 N N2 4U9 . . . B 2 14.29 15.988 33.269 1 19.5 ? N2 4U9 201 A 1 HETATM 19 C C17 4U9 . . . B 2 16.405 17.132 29.575 1 23.45 ? C17 4U9 201 A 1 HETATM 20 C C16 4U9 . . . B 2 16.882 17.352 28.279 1 25.14 ? C16 4U9 201 A 1 HETATM 21 N N3 4U9 . . . B 2 15.067 16.036 27.364 1 22.92 ? N3 4U9 201 A 1 HETATM 22 C C8 4U9 . . . B 2 17.024 17.067 24.756 1 27.29 ? C8 4U9 201 A 1 HETATM 23 C C9 4U9 . . . B 2 17.568 17.141 23.441 1 27.76 ? C9 4U9 201 A 1 HETATM 24 C C15 4U9 . . . B 2 17.589 16.008 22.618 1 26.31 ? C15 4U9 201 A 1 HETATM 25 C C14 4U9 . . . B 2 18.129 16.099 21.329 1 27.72 ? C14 4U9 201 A 1 HETATM 26 C C12 4U9 . . . B 2 18.65 17.323 20.861 1 30.54 ? C12 4U9 201 A 1 HETATM 27 C C13 4U9 . A . B 2 19.246 17.419 19.477 0.5 30.88 ? C13 4U9 201 A 1 HETATM 28 C C13 4U9 . B . B 2 19.222 17.445 19.472 0.5 28.67 ? C13 4U9 201 A 1 HETATM 29 F F3 4U9 . A . B 2 20.436 16.76 19.382 0.5 35.13 ? F3 4U9 201 A 1 HETATM 30 F F3 4U9 . B . B 2 19.351 16.255 18.821 0.5 26.23 ? F3 4U9 201 A 1 HETATM 31 F F2 4U9 . A . B 2 19.501 18.704 19.1 0.5 35.15 ? F2 4U9 201 A 1 HETATM 32 F F2 4U9 . B . B 2 20.456 18.022 19.462 0.5 31.16 ? F2 4U9 201 A 1 HETATM 33 F F1 4U9 . A . B 2 18.458 16.885 18.505 0.5 30.98 ? F1 4U9 201 A 1 HETATM 34 F F1 4U9 . B . B 2 18.435 18.218 18.672 0.5 28.23 ? F1 4U9 201 A 1 HETATM 35 C C11 4U9 . . . B 2 18.621 18.45 21.704 0.7 27.83 ? C11 4U9 201 A 1 HETATM 36 C C10 4U9 . . . B 2 18.082 18.36 22.99 0.7 28.8 ? C10 4U9 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 594 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 36 #