data_4YL3 # _model_server_result.job_id McLnjJMg5FaEVgBU4raLHw _model_server_result.datetime_utc '2024-11-14 18:44:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4YL3 # _exptl.entry_id 4YL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YL3 _cell.length_a 76.434 _cell.length_b 76.434 _cell.length_c 123.264 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 223 n n N1 HN11 GSH sing 224 n n N1 HN12 GSH sing 225 n n CA1 C1 GSH sing 226 n n CA1 CB1 GSH sing 227 n n CA1 HA1 GSH sing 228 n n C1 O11 GSH doub 229 n n C1 O12 GSH sing 230 n n O12 H12 GSH sing 231 n n CB1 CG1 GSH sing 232 n n CB1 HB12 GSH sing 233 n n CB1 HB13 GSH sing 234 n n CG1 CD1 GSH sing 235 n n CG1 HG12 GSH sing 236 n n CG1 HG13 GSH sing 237 n n CD1 OE1 GSH doub 238 n n CD1 N2 GSH sing 239 n n N2 CA2 GSH sing 240 n n N2 HN2 GSH sing 241 n n CA2 C2 GSH sing 242 n n CA2 CB2 GSH sing 243 n n CA2 HA2 GSH sing 244 n n C2 O2 GSH doub 245 n n C2 N3 GSH sing 246 n n CB2 SG2 GSH sing 247 n n CB2 HB22 GSH sing 248 n n CB2 HB23 GSH sing 249 n n SG2 HSG GSH sing 250 n n N3 CA3 GSH sing 251 n n N3 HN3 GSH sing 252 n n CA3 C3 GSH sing 253 n n CA3 HA31 GSH sing 254 n n CA3 HA32 GSH sing 255 n n C3 O31 GSH doub 256 n n C3 O32 GSH sing 257 n n O32 H32 GSH sing 258 n n # _atom_sites.entry_id 4YL3 _atom_sites.fract_transf_matrix[1][1] 0.013083 _atom_sites.fract_transf_matrix[1][2] 0.007554 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4U9 A 1 201 1 4U9 4U9 . C 3 GSH A 1 202 1 GSH GTT . D 4 BOG A 1 203 2 BOG BOG . E 4 BOG A 1 204 3 BOG BOG . F 5 PG4 A 1 205 4 PG4 PG4 . G 6 HOH A 1 301 58 HOH HOH . G 6 HOH A 2 302 124 HOH HOH . G 6 HOH A 3 303 90 HOH HOH . G 6 HOH A 4 304 1 HOH HOH . G 6 HOH A 5 305 69 HOH HOH . G 6 HOH A 6 306 18 HOH HOH . G 6 HOH A 7 307 22 HOH HOH . G 6 HOH A 8 308 26 HOH HOH . G 6 HOH A 9 309 24 HOH HOH . G 6 HOH A 10 310 35 HOH HOH . G 6 HOH A 11 311 108 HOH HOH . G 6 HOH A 12 312 17 HOH HOH . G 6 HOH A 13 313 23 HOH HOH . G 6 HOH A 14 314 72 HOH HOH . G 6 HOH A 15 315 29 HOH HOH . G 6 HOH A 16 316 10 HOH HOH . G 6 HOH A 17 317 51 HOH HOH . G 6 HOH A 18 318 73 HOH HOH . G 6 HOH A 19 319 82 HOH HOH . G 6 HOH A 20 320 36 HOH HOH . G 6 HOH A 21 321 27 HOH HOH . G 6 HOH A 22 322 5 HOH HOH . G 6 HOH A 23 323 7 HOH HOH . G 6 HOH A 24 324 61 HOH HOH . G 6 HOH A 25 325 55 HOH HOH . G 6 HOH A 26 326 70 HOH HOH . G 6 HOH A 27 327 43 HOH HOH . G 6 HOH A 28 328 13 HOH HOH . G 6 HOH A 29 329 85 HOH HOH . G 6 HOH A 30 330 42 HOH HOH . G 6 HOH A 31 331 99 HOH HOH . G 6 HOH A 32 332 80 HOH HOH . G 6 HOH A 33 333 8 HOH HOH . G 6 HOH A 34 334 6 HOH HOH . G 6 HOH A 35 335 30 HOH HOH . G 6 HOH A 36 336 53 HOH HOH . G 6 HOH A 37 337 19 HOH HOH . G 6 HOH A 38 338 16 HOH HOH . G 6 HOH A 39 339 49 HOH HOH . G 6 HOH A 40 340 75 HOH HOH . G 6 HOH A 41 341 84 HOH HOH . G 6 HOH A 42 342 20 HOH HOH . G 6 HOH A 43 343 9 HOH HOH . G 6 HOH A 44 344 50 HOH HOH . G 6 HOH A 45 345 39 HOH HOH . G 6 HOH A 46 346 138 HOH HOH . G 6 HOH A 47 347 4 HOH HOH . G 6 HOH A 48 348 44 HOH HOH . G 6 HOH A 49 349 38 HOH HOH . G 6 HOH A 50 350 33 HOH HOH . G 6 HOH A 51 351 41 HOH HOH . G 6 HOH A 52 352 11 HOH HOH . G 6 HOH A 53 353 54 HOH HOH . G 6 HOH A 54 354 21 HOH HOH . G 6 HOH A 55 355 37 HOH HOH . G 6 HOH A 56 356 47 HOH HOH . G 6 HOH A 57 357 12 HOH HOH . G 6 HOH A 58 358 64 HOH HOH . G 6 HOH A 59 359 59 HOH HOH . G 6 HOH A 60 360 52 HOH HOH . G 6 HOH A 61 361 15 HOH HOH . G 6 HOH A 62 362 31 HOH HOH . G 6 HOH A 63 363 67 HOH HOH . G 6 HOH A 64 364 81 HOH HOH . G 6 HOH A 65 365 71 HOH HOH . G 6 HOH A 66 366 40 HOH HOH . G 6 HOH A 67 367 28 HOH HOH . G 6 HOH A 68 368 77 HOH HOH . G 6 HOH A 69 369 107 HOH HOH . G 6 HOH A 70 370 126 HOH HOH . G 6 HOH A 71 371 125 HOH HOH . G 6 HOH A 72 372 62 HOH HOH . G 6 HOH A 73 373 25 HOH HOH . G 6 HOH A 74 374 101 HOH HOH . G 6 HOH A 75 375 79 HOH HOH . G 6 HOH A 76 376 60 HOH HOH . G 6 HOH A 77 377 129 HOH HOH . G 6 HOH A 78 378 86 HOH HOH . G 6 HOH A 79 379 78 HOH HOH . G 6 HOH A 80 380 76 HOH HOH . G 6 HOH A 81 381 14 HOH HOH . G 6 HOH A 82 382 48 HOH HOH . G 6 HOH A 83 383 32 HOH HOH . G 6 HOH A 84 384 46 HOH HOH . G 6 HOH A 85 385 45 HOH HOH . G 6 HOH A 86 386 57 HOH HOH . G 6 HOH A 87 387 66 HOH HOH . G 6 HOH A 88 388 98 HOH HOH . G 6 HOH A 89 389 127 HOH HOH . G 6 HOH A 90 390 97 HOH HOH . G 6 HOH A 91 391 110 HOH HOH . G 6 HOH A 92 392 133 HOH HOH . G 6 HOH A 93 393 115 HOH HOH . G 6 HOH A 94 394 122 HOH HOH . G 6 HOH A 95 395 106 HOH HOH . G 6 HOH A 96 396 94 HOH HOH . G 6 HOH A 97 397 100 HOH HOH . G 6 HOH A 98 398 102 HOH HOH . G 6 HOH A 99 399 56 HOH HOH . G 6 HOH A 100 400 63 HOH HOH . G 6 HOH A 101 401 136 HOH HOH . G 6 HOH A 102 402 140 HOH HOH . G 6 HOH A 103 403 134 HOH HOH . G 6 HOH A 104 404 68 HOH HOH . G 6 HOH A 105 405 103 HOH HOH . G 6 HOH A 106 406 131 HOH HOH . G 6 HOH A 107 407 111 HOH HOH . G 6 HOH A 108 408 88 HOH HOH . G 6 HOH A 109 409 95 HOH HOH . G 6 HOH A 110 410 83 HOH HOH . G 6 HOH A 111 411 2 HOH HOH . G 6 HOH A 112 412 117 HOH HOH . G 6 HOH A 113 413 89 HOH HOH . G 6 HOH A 114 414 92 HOH HOH . G 6 HOH A 115 415 74 HOH HOH . G 6 HOH A 116 416 112 HOH HOH . G 6 HOH A 117 417 128 HOH HOH . G 6 HOH A 118 418 137 HOH HOH . G 6 HOH A 119 419 109 HOH HOH . G 6 HOH A 120 420 34 HOH HOH . G 6 HOH A 121 421 120 HOH HOH . G 6 HOH A 122 422 104 HOH HOH . G 6 HOH A 123 423 116 HOH HOH . G 6 HOH A 124 424 93 HOH HOH . G 6 HOH A 125 425 123 HOH HOH . G 6 HOH A 126 426 139 HOH HOH . G 6 HOH A 127 427 114 HOH HOH . G 6 HOH A 128 428 65 HOH HOH . G 6 HOH A 129 429 3 HOH HOH . G 6 HOH A 130 430 130 HOH HOH . G 6 HOH A 131 431 87 HOH HOH . G 6 HOH A 132 432 96 HOH HOH . G 6 HOH A 133 433 119 HOH HOH . G 6 HOH A 134 434 113 HOH HOH . G 6 HOH A 135 435 91 HOH HOH . G 6 HOH A 136 436 105 HOH HOH . G 6 HOH A 137 437 118 HOH HOH . G 6 HOH A 138 438 121 HOH HOH . G 6 HOH A 139 439 135 HOH HOH . G 6 HOH A 140 440 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . A . C 3 4.208 7.957 29.99 0.7 21.09 ? N1 GSH 202 A 1 HETATM 2 C CA1 GSH . A . C 3 5.413 8.827 30.067 0.7 18.98 ? CA1 GSH 202 A 1 HETATM 3 C C1 GSH . A . C 3 5.91 8.976 31.486 0.7 25.36 ? C1 GSH 202 A 1 HETATM 4 O O11 GSH . A . C 3 7.062 9.415 31.673 0.7 23.69 ? O11 GSH 202 A 1 HETATM 5 O O12 GSH . A . C 3 5.179 8.635 32.441 0.7 21.01 ? O12 GSH 202 A 1 HETATM 6 C CB1 GSH . A . C 3 5.108 10.16 29.37 0.7 17.89 ? CB1 GSH 202 A 1 HETATM 7 C CG1 GSH . A . C 3 6.314 11.063 29.081 0.7 17.08 ? CG1 GSH 202 A 1 HETATM 8 C CD1 GSH . A . C 3 7.547 10.305 28.625 0.7 16.11 ? CD1 GSH 202 A 1 HETATM 9 O OE1 GSH . A . C 3 7.475 9.427 27.78 0.7 17.46 ? OE1 GSH 202 A 1 HETATM 10 N N2 GSH . A . C 3 8.7 10.647 29.202 0.7 20.2 ? N2 GSH 202 A 1 HETATM 11 C CA2 GSH . A . C 3 9.976 10.063 28.815 0.7 18.96 ? CA2 GSH 202 A 1 HETATM 12 C C2 GSH . A . C 3 10.286 8.757 29.5 0.7 18.68 ? C2 GSH 202 A 1 HETATM 13 O O2 GSH . A . C 3 11.345 8.185 29.251 0.7 13.15 ? O2 GSH 202 A 1 HETATM 14 C CB2 GSH . A . C 3 11.101 11.054 29.093 0.7 17.93 ? CB2 GSH 202 A 1 HETATM 15 S SG2 GSH . A . C 3 11.241 11.455 30.852 0.7 23.33 ? SG2 GSH 202 A 1 HETATM 16 N N3 GSH . A . C 3 9.375 8.283 30.358 0.7 15.67 ? N3 GSH 202 A 1 HETATM 17 C CA3 GSH . A . C 3 9.62 7.116 31.186 0.7 17.82 ? CA3 GSH 202 A 1 HETATM 18 C C3 GSH . A . C 3 8.434 6.183 31.201 0.7 17.2 ? C3 GSH 202 A 1 HETATM 19 O O31 GSH . A . C 3 7.541 6.328 30.335 0.7 22.37 ? O31 GSH 202 A 1 HETATM 20 O O32 GSH . A . C 3 8.384 5.304 32.083 0.7 16.31 ? O32 GSH 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #