data_4YL3 # _model_server_result.job_id z-2-UwAI2pwFmMJSfrjRJQ _model_server_result.datetime_utc '2024-11-14 18:28:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 4YL3 # _exptl.entry_id 4YL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YL3 _cell.length_a 76.434 _cell.length_b 76.434 _cell.length_c 123.264 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 367 n n O1 HO1 PG4 sing 368 n n C1 C2 PG4 sing 369 n n C1 H11 PG4 sing 370 n n C1 H12 PG4 sing 371 n n C2 O2 PG4 sing 372 n n C2 H21 PG4 sing 373 n n C2 H22 PG4 sing 374 n n O2 C3 PG4 sing 375 n n C3 C4 PG4 sing 376 n n C3 H31 PG4 sing 377 n n C3 H32 PG4 sing 378 n n C4 O3 PG4 sing 379 n n C4 H41 PG4 sing 380 n n C4 H42 PG4 sing 381 n n O3 C5 PG4 sing 382 n n C5 C6 PG4 sing 383 n n C5 H51 PG4 sing 384 n n C5 H52 PG4 sing 385 n n C6 O4 PG4 sing 386 n n C6 H61 PG4 sing 387 n n C6 H62 PG4 sing 388 n n O4 C7 PG4 sing 389 n n C7 C8 PG4 sing 390 n n C7 H71 PG4 sing 391 n n C7 H72 PG4 sing 392 n n C8 O5 PG4 sing 393 n n C8 H81 PG4 sing 394 n n C8 H82 PG4 sing 395 n n O5 HO5 PG4 sing 396 n n # _atom_sites.entry_id 4YL3 _atom_sites.fract_transf_matrix[1][1] 0.013083 _atom_sites.fract_transf_matrix[1][2] 0.007554 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4U9 A 1 201 1 4U9 4U9 . C 3 GSH A 1 202 1 GSH GTT . D 4 BOG A 1 203 2 BOG BOG . E 4 BOG A 1 204 3 BOG BOG . F 5 PG4 A 1 205 4 PG4 PG4 . G 6 HOH A 1 301 58 HOH HOH . G 6 HOH A 2 302 124 HOH HOH . G 6 HOH A 3 303 90 HOH HOH . G 6 HOH A 4 304 1 HOH HOH . G 6 HOH A 5 305 69 HOH HOH . G 6 HOH A 6 306 18 HOH HOH . G 6 HOH A 7 307 22 HOH HOH . G 6 HOH A 8 308 26 HOH HOH . G 6 HOH A 9 309 24 HOH HOH . G 6 HOH A 10 310 35 HOH HOH . G 6 HOH A 11 311 108 HOH HOH . G 6 HOH A 12 312 17 HOH HOH . G 6 HOH A 13 313 23 HOH HOH . G 6 HOH A 14 314 72 HOH HOH . G 6 HOH A 15 315 29 HOH HOH . G 6 HOH A 16 316 10 HOH HOH . G 6 HOH A 17 317 51 HOH HOH . G 6 HOH A 18 318 73 HOH HOH . G 6 HOH A 19 319 82 HOH HOH . G 6 HOH A 20 320 36 HOH HOH . G 6 HOH A 21 321 27 HOH HOH . G 6 HOH A 22 322 5 HOH HOH . G 6 HOH A 23 323 7 HOH HOH . G 6 HOH A 24 324 61 HOH HOH . G 6 HOH A 25 325 55 HOH HOH . G 6 HOH A 26 326 70 HOH HOH . G 6 HOH A 27 327 43 HOH HOH . G 6 HOH A 28 328 13 HOH HOH . G 6 HOH A 29 329 85 HOH HOH . G 6 HOH A 30 330 42 HOH HOH . G 6 HOH A 31 331 99 HOH HOH . G 6 HOH A 32 332 80 HOH HOH . G 6 HOH A 33 333 8 HOH HOH . G 6 HOH A 34 334 6 HOH HOH . G 6 HOH A 35 335 30 HOH HOH . G 6 HOH A 36 336 53 HOH HOH . G 6 HOH A 37 337 19 HOH HOH . G 6 HOH A 38 338 16 HOH HOH . G 6 HOH A 39 339 49 HOH HOH . G 6 HOH A 40 340 75 HOH HOH . G 6 HOH A 41 341 84 HOH HOH . G 6 HOH A 42 342 20 HOH HOH . G 6 HOH A 43 343 9 HOH HOH . G 6 HOH A 44 344 50 HOH HOH . G 6 HOH A 45 345 39 HOH HOH . G 6 HOH A 46 346 138 HOH HOH . G 6 HOH A 47 347 4 HOH HOH . G 6 HOH A 48 348 44 HOH HOH . G 6 HOH A 49 349 38 HOH HOH . G 6 HOH A 50 350 33 HOH HOH . G 6 HOH A 51 351 41 HOH HOH . G 6 HOH A 52 352 11 HOH HOH . G 6 HOH A 53 353 54 HOH HOH . G 6 HOH A 54 354 21 HOH HOH . G 6 HOH A 55 355 37 HOH HOH . G 6 HOH A 56 356 47 HOH HOH . G 6 HOH A 57 357 12 HOH HOH . G 6 HOH A 58 358 64 HOH HOH . G 6 HOH A 59 359 59 HOH HOH . G 6 HOH A 60 360 52 HOH HOH . G 6 HOH A 61 361 15 HOH HOH . G 6 HOH A 62 362 31 HOH HOH . G 6 HOH A 63 363 67 HOH HOH . G 6 HOH A 64 364 81 HOH HOH . G 6 HOH A 65 365 71 HOH HOH . G 6 HOH A 66 366 40 HOH HOH . G 6 HOH A 67 367 28 HOH HOH . G 6 HOH A 68 368 77 HOH HOH . G 6 HOH A 69 369 107 HOH HOH . G 6 HOH A 70 370 126 HOH HOH . G 6 HOH A 71 371 125 HOH HOH . G 6 HOH A 72 372 62 HOH HOH . G 6 HOH A 73 373 25 HOH HOH . G 6 HOH A 74 374 101 HOH HOH . G 6 HOH A 75 375 79 HOH HOH . G 6 HOH A 76 376 60 HOH HOH . G 6 HOH A 77 377 129 HOH HOH . G 6 HOH A 78 378 86 HOH HOH . G 6 HOH A 79 379 78 HOH HOH . G 6 HOH A 80 380 76 HOH HOH . G 6 HOH A 81 381 14 HOH HOH . G 6 HOH A 82 382 48 HOH HOH . G 6 HOH A 83 383 32 HOH HOH . G 6 HOH A 84 384 46 HOH HOH . G 6 HOH A 85 385 45 HOH HOH . G 6 HOH A 86 386 57 HOH HOH . G 6 HOH A 87 387 66 HOH HOH . G 6 HOH A 88 388 98 HOH HOH . G 6 HOH A 89 389 127 HOH HOH . G 6 HOH A 90 390 97 HOH HOH . G 6 HOH A 91 391 110 HOH HOH . G 6 HOH A 92 392 133 HOH HOH . G 6 HOH A 93 393 115 HOH HOH . G 6 HOH A 94 394 122 HOH HOH . G 6 HOH A 95 395 106 HOH HOH . G 6 HOH A 96 396 94 HOH HOH . G 6 HOH A 97 397 100 HOH HOH . G 6 HOH A 98 398 102 HOH HOH . G 6 HOH A 99 399 56 HOH HOH . G 6 HOH A 100 400 63 HOH HOH . G 6 HOH A 101 401 136 HOH HOH . G 6 HOH A 102 402 140 HOH HOH . G 6 HOH A 103 403 134 HOH HOH . G 6 HOH A 104 404 68 HOH HOH . G 6 HOH A 105 405 103 HOH HOH . G 6 HOH A 106 406 131 HOH HOH . G 6 HOH A 107 407 111 HOH HOH . G 6 HOH A 108 408 88 HOH HOH . G 6 HOH A 109 409 95 HOH HOH . G 6 HOH A 110 410 83 HOH HOH . G 6 HOH A 111 411 2 HOH HOH . G 6 HOH A 112 412 117 HOH HOH . G 6 HOH A 113 413 89 HOH HOH . G 6 HOH A 114 414 92 HOH HOH . G 6 HOH A 115 415 74 HOH HOH . G 6 HOH A 116 416 112 HOH HOH . G 6 HOH A 117 417 128 HOH HOH . G 6 HOH A 118 418 137 HOH HOH . G 6 HOH A 119 419 109 HOH HOH . G 6 HOH A 120 420 34 HOH HOH . G 6 HOH A 121 421 120 HOH HOH . G 6 HOH A 122 422 104 HOH HOH . G 6 HOH A 123 423 116 HOH HOH . G 6 HOH A 124 424 93 HOH HOH . G 6 HOH A 125 425 123 HOH HOH . G 6 HOH A 126 426 139 HOH HOH . G 6 HOH A 127 427 114 HOH HOH . G 6 HOH A 128 428 65 HOH HOH . G 6 HOH A 129 429 3 HOH HOH . G 6 HOH A 130 430 130 HOH HOH . G 6 HOH A 131 431 87 HOH HOH . G 6 HOH A 132 432 96 HOH HOH . G 6 HOH A 133 433 119 HOH HOH . G 6 HOH A 134 434 113 HOH HOH . G 6 HOH A 135 435 91 HOH HOH . G 6 HOH A 136 436 105 HOH HOH . G 6 HOH A 137 437 118 HOH HOH . G 6 HOH A 138 438 121 HOH HOH . G 6 HOH A 139 439 135 HOH HOH . G 6 HOH A 140 440 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . F 5 14.034 19.179 8.818 1 69.97 ? O1 PG4 205 A 1 HETATM 2 C C1 PG4 . . . F 5 14.495 18.231 9.788 1 61.18 ? C1 PG4 205 A 1 HETATM 3 C C2 PG4 . . . F 5 14.384 18.832 11.185 1 55.41 ? C2 PG4 205 A 1 HETATM 4 O O2 PG4 . . . F 5 13.565 17.992 11.999 1 59.37 ? O2 PG4 205 A 1 HETATM 5 C C3 PG4 . . . F 5 14.187 17.677 13.244 1 57.51 ? C3 PG4 205 A 1 HETATM 6 C C4 PG4 . . . F 5 14.279 16.162 13.399 1 58.87 ? C4 PG4 205 A 1 HETATM 7 O O3 PG4 . . . F 5 15.206 15.646 12.445 1 58.11 ? O3 PG4 205 A 1 HETATM 8 C C5 PG4 . . . F 5 15.368 14.233 12.56 1 51.82 ? C5 PG4 205 A 1 HETATM 9 C C6 PG4 . . . F 5 16.709 13.812 11.969 1 48.66 ? C6 PG4 205 A 1 HETATM 10 O O4 PG4 . . . F 5 16.868 14.369 10.663 1 58.49 ? O4 PG4 205 A 1 HETATM 11 C C7 PG4 . . . F 5 17.951 15.3 10.609 1 60.91 ? C7 PG4 205 A 1 HETATM 12 C C8 PG4 . . . F 5 18.222 15.684 9.16 1 61.26 ? C8 PG4 205 A 1 HETATM 13 O O5 PG4 . . . F 5 17.244 16.636 8.713 1 63.48 ? O5 PG4 205 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #