data_4YL4
#
_model_server_result.job_id            DKCK5bSbXe5jOG91KZk88w 
_model_server_result.datetime_utc      '2025-04-12 23:11:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yl4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4YL4 
#
_exptl.entry_id    4YL4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              63.546 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COPPER (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YL4 
_cell.length_a            56.019 
_cell.length_b            63.2 
_cell.length_c            67.045 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YL4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 40 A HIS 40 1_555 B CU CU . A CU 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc2 A ND1 HIS 40 A HIS 40 1_555 B CU CU . A CU 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc3 A SG CYS 78 A CYS 78 1_555 B CU CU . A CU 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc4 A SG CYS 78 A CYS 78 1_555 B CU CU . A CU 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc5 A ND1 HIS 81 A HIS 81 1_555 B CU CU . A CU 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.862 ? 
metalc ? metalc6 A ND1 HIS 81 A HIS 81 1_555 B CU CU . A CU 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc7 A SD MET 86 A MET 86 1_555 B CU CU . A CU 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.601 ? 
#
_chem_comp.formula           'Cu 2' 
_chem_comp.formula_weight    63.546 
_chem_comp.id                CU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COPPER (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YL4 
_atom_sites.fract_transf_matrix[1][1]    0.017851 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014915 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 201 201 CU CU . 
C 3 GOL A 1 202 1 GOL GOL . 
D 3 GOL A 1 203 2 GOL GOL . 
E 3 GOL A 1 204 3 GOL GOL . 
F 4 HOH A 1 301 156 HOH HOH . 
F 4 HOH A 2 302 4 HOH HOH . 
F 4 HOH A 3 303 21 HOH HOH . 
F 4 HOH A 4 304 70 HOH HOH . 
F 4 HOH A 5 305 123 HOH HOH . 
F 4 HOH A 6 306 78 HOH HOH . 
F 4 HOH A 7 307 44 HOH HOH . 
F 4 HOH A 8 308 58 HOH HOH . 
F 4 HOH A 9 309 171 HOH HOH . 
F 4 HOH A 10 310 1 HOH HOH . 
F 4 HOH A 11 311 7 HOH HOH . 
F 4 HOH A 12 312 41 HOH HOH . 
F 4 HOH A 13 313 89 HOH HOH . 
F 4 HOH A 14 314 90 HOH HOH . 
F 4 HOH A 15 315 167 HOH HOH . 
F 4 HOH A 16 316 99 HOH HOH . 
F 4 HOH A 17 317 131 HOH HOH . 
F 4 HOH A 18 318 71 HOH HOH . 
F 4 HOH A 19 319 57 HOH HOH . 
F 4 HOH A 20 320 67 HOH HOH . 
F 4 HOH A 21 321 83 HOH HOH . 
F 4 HOH A 22 322 53 HOH HOH . 
F 4 HOH A 23 323 38 HOH HOH . 
F 4 HOH A 24 324 3 HOH HOH . 
F 4 HOH A 25 325 62 HOH HOH . 
F 4 HOH A 26 326 29 HOH HOH . 
F 4 HOH A 27 327 52 HOH HOH . 
F 4 HOH A 28 328 114 HOH HOH . 
F 4 HOH A 29 329 147 HOH HOH . 
F 4 HOH A 30 330 37 HOH HOH . 
F 4 HOH A 31 331 39 HOH HOH . 
F 4 HOH A 32 332 18 HOH HOH . 
F 4 HOH A 33 333 14 HOH HOH . 
F 4 HOH A 34 334 27 HOH HOH . 
F 4 HOH A 35 335 2 HOH HOH . 
F 4 HOH A 36 336 113 HOH HOH . 
F 4 HOH A 37 337 170 HOH HOH . 
F 4 HOH A 38 338 46 HOH HOH . 
F 4 HOH A 39 339 111 HOH HOH . 
F 4 HOH A 40 340 5 HOH HOH . 
F 4 HOH A 41 341 40 HOH HOH . 
F 4 HOH A 42 342 31 HOH HOH . 
F 4 HOH A 43 343 55 HOH HOH . 
F 4 HOH A 44 344 118 HOH HOH . 
F 4 HOH A 45 345 96 HOH HOH . 
F 4 HOH A 46 346 16 HOH HOH . 
F 4 HOH A 47 347 12 HOH HOH . 
F 4 HOH A 48 348 177 HOH HOH . 
F 4 HOH A 49 349 64 HOH HOH . 
F 4 HOH A 50 350 8 HOH HOH . 
F 4 HOH A 51 351 49 HOH HOH . 
F 4 HOH A 52 352 97 HOH HOH . 
F 4 HOH A 53 353 22 HOH HOH . 
F 4 HOH A 54 354 63 HOH HOH . 
F 4 HOH A 55 355 43 HOH HOH . 
F 4 HOH A 56 356 154 HOH HOH . 
F 4 HOH A 57 357 19 HOH HOH . 
F 4 HOH A 58 358 68 HOH HOH . 
F 4 HOH A 59 359 45 HOH HOH . 
F 4 HOH A 60 360 161 HOH HOH . 
F 4 HOH A 61 361 74 HOH HOH . 
F 4 HOH A 62 362 50 HOH HOH . 
F 4 HOH A 63 363 6 HOH HOH . 
F 4 HOH A 64 364 15 HOH HOH . 
F 4 HOH A 65 365 108 HOH HOH . 
F 4 HOH A 66 366 28 HOH HOH . 
F 4 HOH A 67 367 56 HOH HOH . 
F 4 HOH A 68 368 94 HOH HOH . 
F 4 HOH A 69 369 158 HOH HOH . 
F 4 HOH A 70 370 32 HOH HOH . 
F 4 HOH A 71 371 60 HOH HOH . 
F 4 HOH A 72 372 9 HOH HOH . 
F 4 HOH A 73 373 36 HOH HOH . 
F 4 HOH A 74 374 10 HOH HOH . 
F 4 HOH A 75 375 76 HOH HOH . 
F 4 HOH A 76 376 24 HOH HOH . 
F 4 HOH A 77 377 169 HOH HOH . 
F 4 HOH A 78 378 102 HOH HOH . 
F 4 HOH A 79 379 47 HOH HOH . 
F 4 HOH A 80 380 116 HOH HOH . 
F 4 HOH A 81 381 168 HOH HOH . 
F 4 HOH A 82 382 33 HOH HOH . 
F 4 HOH A 83 383 65 HOH HOH . 
F 4 HOH A 84 384 79 HOH HOH . 
F 4 HOH A 85 385 66 HOH HOH . 
F 4 HOH A 86 386 110 HOH HOH . 
F 4 HOH A 87 387 13 HOH HOH . 
F 4 HOH A 88 388 164 HOH HOH . 
F 4 HOH A 89 389 72 HOH HOH . 
F 4 HOH A 90 390 92 HOH HOH . 
F 4 HOH A 91 391 112 HOH HOH . 
F 4 HOH A 92 392 91 HOH HOH . 
F 4 HOH A 93 393 35 HOH HOH . 
F 4 HOH A 94 394 34 HOH HOH . 
F 4 HOH A 95 395 23 HOH HOH . 
F 4 HOH A 96 396 25 HOH HOH . 
F 4 HOH A 97 397 20 HOH HOH . 
F 4 HOH A 98 398 17 HOH HOH . 
F 4 HOH A 99 399 160 HOH HOH . 
F 4 HOH A 100 400 122 HOH HOH . 
F 4 HOH A 101 401 166 HOH HOH . 
F 4 HOH A 102 402 121 HOH HOH . 
F 4 HOH A 103 403 77 HOH HOH . 
F 4 HOH A 104 404 54 HOH HOH . 
F 4 HOH A 105 405 165 HOH HOH . 
F 4 HOH A 106 406 26 HOH HOH . 
F 4 HOH A 107 407 48 HOH HOH . 
F 4 HOH A 108 408 105 HOH HOH . 
F 4 HOH A 109 409 125 HOH HOH . 
F 4 HOH A 110 410 163 HOH HOH . 
F 4 HOH A 111 411 143 HOH HOH . 
F 4 HOH A 112 412 146 HOH HOH . 
F 4 HOH A 113 413 162 HOH HOH . 
F 4 HOH A 114 414 51 HOH HOH . 
F 4 HOH A 115 415 30 HOH HOH . 
F 4 HOH A 116 416 61 HOH HOH . 
F 4 HOH A 117 417 159 HOH HOH . 
F 4 HOH A 118 418 141 HOH HOH . 
F 4 HOH A 119 419 84 HOH HOH . 
F 4 HOH A 120 420 93 HOH HOH . 
F 4 HOH A 121 421 75 HOH HOH . 
F 4 HOH A 122 422 104 HOH HOH . 
F 4 HOH A 123 423 173 HOH HOH . 
F 4 HOH A 124 424 69 HOH HOH . 
F 4 HOH A 125 425 175 HOH HOH . 
F 4 HOH A 126 426 128 HOH HOH . 
F 4 HOH A 127 427 100 HOH HOH . 
F 4 HOH A 128 428 107 HOH HOH . 
F 4 HOH A 129 429 130 HOH HOH . 
F 4 HOH A 130 430 174 HOH HOH . 
F 4 HOH A 131 431 73 HOH HOH . 
F 4 HOH A 132 432 119 HOH HOH . 
F 4 HOH A 133 433 98 HOH HOH . 
F 4 HOH A 134 434 172 HOH HOH . 
F 4 HOH A 135 435 127 HOH HOH . 
F 4 HOH A 136 436 106 HOH HOH . 
F 4 HOH A 137 437 126 HOH HOH . 
F 4 HOH A 138 438 86 HOH HOH . 
F 4 HOH A 139 439 145 HOH HOH . 
F 4 HOH A 140 440 81 HOH HOH . 
F 4 HOH A 141 441 87 HOH HOH . 
F 4 HOH A 142 442 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CU CU CU . A . B 2 7.545 9.241 20.314 0.4 8.15 ? CU CU 201 A 1 
HETATM 2 CU CU CU . B . B 2 7.386 9.665 20.001 0.6 9.45 ? CU CU 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          24 
_model_server_stats.element_count           2 
#