data_4YLF
#
_model_server_result.job_id            '_C8X4LTtsUboQjOyQSfTeA' 
_model_server_result.datetime_utc      '2024-11-22 20:06:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ylf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":504}' 
#
_entry.id    4YLF 
#
_exptl.entry_id    4YLF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YLF 
_cell.length_a            81.42 
_cell.length_b            81.42 
_cell.length_c            311.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YLF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,Q,R 1 1 
C,D,K,L,M,N,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 220 A ASP 220 1_555 E FE2 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc2 A OD2 ASP 220 A ASP 220 1_555 E FE2 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc3 A SG CYS 225 A CYS 225 1_555 E FE2 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc4 A SG CYS 228 A CYS 228 1_555 E FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc5 A SG CYS 240 A CYS 240 1_555 E FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc6 B SG CYS 39 B CYS 39 1_555 G FE4 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc7 B SG CYS 42 B CYS 42 1_555 G FE3 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc8 B SG CYS 47 B CYS 47 1_555 G FE2 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc9 B SG CYS 51 B CYS 51 1_555 H FE4 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc10 B SG CYS 90 B CYS 90 1_555 H FE2 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc11 B SG CYS 96 B CYS 96 1_555 H FE3 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc12 B SG CYS 100 B CYS 100 1_555 G FE1 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc13 B OE1 GLU 117 B GLU 117 1_555 H FE1 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? 
metalc ? metalc14 C OD1 ASP 220 C ASP 220 1_555 L FE2 FES . C FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc15 C SG CYS 225 C CYS 225 1_555 L FE2 FES . C FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc16 C SG CYS 228 C CYS 228 1_555 L FE1 FES . C FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc17 C SG CYS 240 C CYS 240 1_555 L FE1 FES . C FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc18 D SG CYS 39 D CYS 39 1_555 M FE4 SF4 . D SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc19 D SG CYS 42 D CYS 42 1_555 M FE1 SF4 . D SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc20 D SG CYS 47 D CYS 47 1_555 M FE2 SF4 . D SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc21 D SG CYS 51 D CYS 51 1_555 N FE4 SF4 . D SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc22 D SG CYS 90 D CYS 90 1_555 N FE1 SF4 . D SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc23 D SG CYS 96 D CYS 96 1_555 N FE3 SF4 . D SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc24 D SG CYS 100 D CYS 100 1_555 M FE3 SF4 . D SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc25 D OE1 GLU 117 D GLU 117 1_555 N FE2 SF4 . D SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 355 n n 
P O2 PO4 sing 356 n n 
P O3 PO4 sing 357 n n 
P O4 PO4 sing 358 n n 
#
_atom_sites.entry_id                     4YLF 
_atom_sites.fract_transf_matrix[1][1]    0.012282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012282 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FES A 1 501 501 FES FES . 
F 4 FAD A 1 502 502 FAD FAD . 
G 5 SF4 B 1 501 501 SF4 SF4 . 
H 5 SF4 B 1 502 502 SF4 SF4 . 
I 4 FAD B 1 503 503 FAD FAD . 
J 6 PO4 B 1 504 1 PO4 PO4 . 
K 4 FAD C 1 301 666 FAD FAD . 
L 3 FES C 1 302 665 FES FES . 
M 5 SF4 D 1 501 999 SF4 SF4 . 
N 5 SF4 D 1 502 998 SF4 SF4 . 
O 4 FAD D 1 503 667 FAD FAD . 
P 6 PO4 D 1 504 1 PO4 PO4 . 
Q 7 HOH A 1 601 288 HOH HOH . 
Q 7 HOH A 2 602 147 HOH HOH . 
Q 7 HOH A 3 603 315 HOH HOH . 
Q 7 HOH A 4 604 90 HOH HOH . 
Q 7 HOH A 5 605 57 HOH HOH . 
Q 7 HOH A 6 606 437 HOH HOH . 
Q 7 HOH A 7 607 115 HOH HOH . 
Q 7 HOH A 8 608 190 HOH HOH . 
Q 7 HOH A 9 609 72 HOH HOH . 
Q 7 HOH A 10 610 425 HOH HOH . 
Q 7 HOH A 11 611 424 HOH HOH . 
Q 7 HOH A 12 612 187 HOH HOH . 
Q 7 HOH A 13 613 228 HOH HOH . 
Q 7 HOH A 14 614 259 HOH HOH . 
Q 7 HOH A 15 615 148 HOH HOH . 
Q 7 HOH A 16 616 274 HOH HOH . 
Q 7 HOH A 17 617 196 HOH HOH . 
Q 7 HOH A 18 618 63 HOH HOH . 
Q 7 HOH A 19 619 272 HOH HOH . 
Q 7 HOH A 20 620 284 HOH HOH . 
Q 7 HOH A 21 621 264 HOH HOH . 
R 7 HOH B 1 601 410 HOH HOH . 
R 7 HOH B 2 602 41 HOH HOH . 
R 7 HOH B 3 603 103 HOH HOH . 
R 7 HOH B 4 604 131 HOH HOH . 
R 7 HOH B 5 605 175 HOH HOH . 
R 7 HOH B 6 606 185 HOH HOH . 
R 7 HOH B 7 607 401 HOH HOH . 
R 7 HOH B 8 608 104 HOH HOH . 
R 7 HOH B 9 609 262 HOH HOH . 
R 7 HOH B 10 610 53 HOH HOH . 
R 7 HOH B 11 611 87 HOH HOH . 
R 7 HOH B 12 612 16 HOH HOH . 
R 7 HOH B 13 613 4 HOH HOH . 
R 7 HOH B 14 614 226 HOH HOH . 
R 7 HOH B 15 615 101 HOH HOH . 
R 7 HOH B 16 616 54 HOH HOH . 
R 7 HOH B 17 617 166 HOH HOH . 
R 7 HOH B 18 618 46 HOH HOH . 
R 7 HOH B 19 619 23 HOH HOH . 
R 7 HOH B 20 620 74 HOH HOH . 
R 7 HOH B 21 621 426 HOH HOH . 
R 7 HOH B 22 622 111 HOH HOH . 
R 7 HOH B 23 623 92 HOH HOH . 
R 7 HOH B 24 624 34 HOH HOH . 
R 7 HOH B 25 625 109 HOH HOH . 
R 7 HOH B 26 626 10 HOH HOH . 
R 7 HOH B 27 627 138 HOH HOH . 
R 7 HOH B 28 628 189 HOH HOH . 
R 7 HOH B 29 629 58 HOH HOH . 
R 7 HOH B 30 630 78 HOH HOH . 
R 7 HOH B 31 631 422 HOH HOH . 
R 7 HOH B 32 632 430 HOH HOH . 
R 7 HOH B 33 633 398 HOH HOH . 
R 7 HOH B 34 634 237 HOH HOH . 
R 7 HOH B 35 635 143 HOH HOH . 
R 7 HOH B 36 636 402 HOH HOH . 
R 7 HOH B 37 637 126 HOH HOH . 
R 7 HOH B 38 638 362 HOH HOH . 
R 7 HOH B 39 639 344 HOH HOH . 
R 7 HOH B 40 640 257 HOH HOH . 
R 7 HOH B 41 641 428 HOH HOH . 
R 7 HOH B 42 642 439 HOH HOH . 
R 7 HOH B 43 643 399 HOH HOH . 
R 7 HOH B 44 644 21 HOH HOH . 
R 7 HOH B 45 645 395 HOH HOH . 
R 7 HOH B 46 646 113 HOH HOH . 
R 7 HOH B 47 647 225 HOH HOH . 
R 7 HOH B 48 648 305 HOH HOH . 
R 7 HOH B 49 649 394 HOH HOH . 
R 7 HOH B 50 650 168 HOH HOH . 
R 7 HOH B 51 651 243 HOH HOH . 
R 7 HOH B 52 652 202 HOH HOH . 
R 7 HOH B 53 653 152 HOH HOH . 
R 7 HOH B 54 654 434 HOH HOH . 
R 7 HOH B 55 655 338 HOH HOH . 
R 7 HOH B 56 656 80 HOH HOH . 
R 7 HOH B 57 657 342 HOH HOH . 
R 7 HOH B 58 658 260 HOH HOH . 
S 7 HOH C 1 401 82 HOH HOH . 
S 7 HOH C 2 402 183 HOH HOH . 
S 7 HOH C 3 403 112 HOH HOH . 
S 7 HOH C 4 404 416 HOH HOH . 
S 7 HOH C 5 405 184 HOH HOH . 
S 7 HOH C 6 406 265 HOH HOH . 
S 7 HOH C 7 407 121 HOH HOH . 
S 7 HOH C 8 408 419 HOH HOH . 
S 7 HOH C 9 409 314 HOH HOH . 
S 7 HOH C 10 410 363 HOH HOH . 
S 7 HOH C 11 411 417 HOH HOH . 
S 7 HOH C 12 412 316 HOH HOH . 
S 7 HOH C 13 413 280 HOH HOH . 
S 7 HOH C 14 414 244 HOH HOH . 
S 7 HOH C 15 415 258 HOH HOH . 
S 7 HOH C 16 416 224 HOH HOH . 
S 7 HOH C 17 417 133 HOH HOH . 
S 7 HOH C 18 418 349 HOH HOH . 
T 7 HOH D 1 601 414 HOH HOH . 
T 7 HOH D 2 602 227 HOH HOH . 
T 7 HOH D 3 603 436 HOH HOH . 
T 7 HOH D 4 604 435 HOH HOH . 
T 7 HOH D 5 605 397 HOH HOH . 
T 7 HOH D 6 606 429 HOH HOH . 
T 7 HOH D 7 607 45 HOH HOH . 
T 7 HOH D 8 608 407 HOH HOH . 
T 7 HOH D 9 609 25 HOH HOH . 
T 7 HOH D 10 610 210 HOH HOH . 
T 7 HOH D 11 611 427 HOH HOH . 
T 7 HOH D 12 612 421 HOH HOH . 
T 7 HOH D 13 613 88 HOH HOH . 
T 7 HOH D 14 614 423 HOH HOH . 
T 7 HOH D 15 615 440 HOH HOH . 
T 7 HOH D 16 616 403 HOH HOH . 
T 7 HOH D 17 617 124 HOH HOH . 
T 7 HOH D 18 618 418 HOH HOH . 
T 7 HOH D 19 619 441 HOH HOH . 
T 7 HOH D 20 620 33 HOH HOH . 
T 7 HOH D 21 621 164 HOH HOH . 
T 7 HOH D 22 622 59 HOH HOH . 
T 7 HOH D 23 623 318 HOH HOH . 
T 7 HOH D 24 624 6 HOH HOH . 
T 7 HOH D 25 625 214 HOH HOH . 
T 7 HOH D 26 626 404 HOH HOH . 
T 7 HOH D 27 627 61 HOH HOH . 
T 7 HOH D 28 628 267 HOH HOH . 
T 7 HOH D 29 629 304 HOH HOH . 
T 7 HOH D 30 630 413 HOH HOH . 
T 7 HOH D 31 631 233 HOH HOH . 
T 7 HOH D 32 632 161 HOH HOH . 
T 7 HOH D 33 633 254 HOH HOH . 
T 7 HOH D 34 634 442 HOH HOH . 
T 7 HOH D 35 635 98 HOH HOH . 
T 7 HOH D 36 636 415 HOH HOH . 
T 7 HOH D 37 637 232 HOH HOH . 
T 7 HOH D 38 638 22 HOH HOH . 
T 7 HOH D 39 639 333 HOH HOH . 
T 7 HOH D 40 640 411 HOH HOH . 
T 7 HOH D 41 641 31 HOH HOH . 
T 7 HOH D 42 642 91 HOH HOH . 
T 7 HOH D 43 643 405 HOH HOH . 
T 7 HOH D 44 644 156 HOH HOH . 
T 7 HOH D 45 645 64 HOH HOH . 
T 7 HOH D 46 646 52 HOH HOH . 
T 7 HOH D 47 647 329 HOH HOH . 
T 7 HOH D 48 648 431 HOH HOH . 
T 7 HOH D 49 649 433 HOH HOH . 
T 7 HOH D 50 650 392 HOH HOH . 
T 7 HOH D 51 651 68 HOH HOH . 
T 7 HOH D 52 652 438 HOH HOH . 
T 7 HOH D 53 653 319 HOH HOH . 
T 7 HOH D 54 654 67 HOH HOH . 
T 7 HOH D 55 655 432 HOH HOH . 
T 7 HOH D 56 656 142 HOH HOH . 
T 7 HOH D 57 657 17 HOH HOH . 
T 7 HOH D 58 658 242 HOH HOH . 
T 7 HOH D 59 659 151 HOH HOH . 
T 7 HOH D 60 660 153 HOH HOH . 
T 7 HOH D 61 661 299 HOH HOH . 
T 7 HOH D 62 662 51 HOH HOH . 
T 7 HOH D 63 663 321 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . J 6 -42.138 30.108 9.811 1 78.69 ? P PO4 504 B 1 
HETATM 2 O O1 PO4 . . . J 6 -42.656 30.979 8.695 1 79.15 ? O1 PO4 504 B 1 
HETATM 3 O O2 PO4 . . . J 6 -43.32 29.597 10.598 1 67.33 ? O2 PO4 504 B 1 
HETATM 4 O O3 PO4 . . . J 6 -41.357 28.945 9.241 1 56.71 ? O3 PO4 504 B 1 
HETATM 5 O O4 PO4 . . . J 6 -41.235 30.93 10.702 1 93.3 ? O4 PO4 504 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#