data_4YLS # _model_server_result.job_id G-Y4nAu2o0n3vqRn9uSGow _model_server_result.datetime_utc '2025-07-07 20:00:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4YLS # _exptl.entry_id 4YLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YLS _cell.length_a 79.126 _cell.length_b 122.324 _cell.length_c 129.445 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4YLS _atom_sites.fract_transf_matrix[1][1] 0.012638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 601 601 ANP ADP . C 3 HOH A 1 701 709 HOH HOH . C 3 HOH A 2 702 718 HOH HOH . C 3 HOH A 3 703 719 HOH HOH . C 3 HOH A 4 704 711 HOH HOH . C 3 HOH A 5 705 708 HOH HOH . C 3 HOH A 6 706 713 HOH HOH . C 3 HOH A 7 707 717 HOH HOH . C 3 HOH A 8 708 706 HOH HOH . C 3 HOH A 9 709 701 HOH HOH . C 3 HOH A 10 710 712 HOH HOH . C 3 HOH A 11 711 702 HOH HOH . C 3 HOH A 12 712 703 HOH HOH . C 3 HOH A 13 713 716 HOH HOH . C 3 HOH A 14 714 704 HOH HOH . C 3 HOH A 15 715 715 HOH HOH . C 3 HOH A 16 716 705 HOH HOH . C 3 HOH A 17 717 707 HOH HOH . C 3 HOH A 18 718 720 HOH HOH . C 3 HOH A 19 719 710 HOH HOH . C 3 HOH A 20 720 714 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ANP . . . B 2 -29.332 -24.193 -14.28 1 129.74 ? PB ANP 601 A 1 HETATM 2 O O1B ANP . . . B 2 -28.707 -23.764 -15.537 1 130.08 ? O1B ANP 601 A 1 HETATM 3 O O2B ANP . . . B 2 -29.762 -25.609 -14.42 1 128.87 ? O2B ANP 601 A 1 HETATM 4 N N3B ANP . . . B 2 -30.508 -23.351 -14.013 1 128.71 ? N3B ANP 601 A 1 HETATM 5 P PA ANP . . . B 2 -28.111 -24.957 -11.852 1 158.09 ? PA ANP 601 A 1 HETATM 6 O O1A ANP . . . B 2 -28.863 -26.314 -12.037 1 129.46 ? O1A ANP 601 A 1 HETATM 7 O O2A ANP . . . B 2 -26.616 -25.231 -11.647 1 157.93 ? O2A ANP 601 A 1 HETATM 8 O O3A ANP . . . B 2 -28.299 -24.012 -13.123 1 189.79 ? O3A ANP 601 A 1 HETATM 9 O O5' ANP . . . B 2 -28.71 -24.187 -10.509 1 99.19 ? O5' ANP 601 A 1 HETATM 10 C C5' ANP . . . B 2 -29.057 -22.806 -10.614 1 93.4 ? C5' ANP 601 A 1 HETATM 11 C C4' ANP . . . B 2 -29.61 -22.359 -9.392 1 84.8 ? C4' ANP 601 A 1 HETATM 12 O O4' ANP . . . B 2 -28.726 -22.768 -8.221 1 76.68 ? O4' ANP 601 A 1 HETATM 13 C C3' ANP . . . B 2 -29.656 -20.768 -9.379 1 96.59 ? C3' ANP 601 A 1 HETATM 14 O O3' ANP . . . B 2 -31.062 -20.284 -9.155 1 103.63 ? O3' ANP 601 A 1 HETATM 15 C C2' ANP . . . B 2 -28.905 -20.403 -8.428 1 87.62 ? C2' ANP 601 A 1 HETATM 16 O O2' ANP . . . B 2 -29.539 -19.346 -7.673 1 81.08 ? O2' ANP 601 A 1 HETATM 17 C C1' ANP . . . B 2 -28.67 -21.704 -7.453 1 75.05 ? C1' ANP 601 A 1 HETATM 18 N N9 ANP . . . B 2 -27.449 -21.566 -6.733 1 78.04 ? N9 ANP 601 A 1 HETATM 19 C C8 ANP . . . B 2 -26.736 -22.41 -7.547 1 79.98 ? C8 ANP 601 A 1 HETATM 20 N N7 ANP . . . B 2 -25.465 -22.465 -7.064 1 76.46 ? N7 ANP 601 A 1 HETATM 21 C C5 ANP . . . B 2 -25.391 -21.652 -5.956 1 73.29 ? C5 ANP 601 A 1 HETATM 22 C C6 ANP . . . B 2 -24.333 -21.337 -5.079 1 72.69 ? C6 ANP 601 A 1 HETATM 23 N N6 ANP . . . B 2 -22.957 -21.749 -5.026 1 71.49 ? N6 ANP 601 A 1 HETATM 24 N N1 ANP . . . B 2 -24.542 -20.493 -4.053 1 73.94 ? N1 ANP 601 A 1 HETATM 25 C C2 ANP . . . B 2 -25.795 -19.931 -3.856 1 74.93 ? C2 ANP 601 A 1 HETATM 26 N N3 ANP . . . B 2 -26.825 -20.234 -4.705 1 72.55 ? N3 ANP 601 A 1 HETATM 27 C C4 ANP . . . B 2 -26.618 -21.098 -5.757 1 72.92 ? C4 ANP 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #