data_4YLW # _model_server_result.job_id IumvsFCs0F3y8tsYyeniIA _model_server_result.datetime_utc '2025-07-08 12:43:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ylw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4YLW # _exptl.entry_id 4YLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.408 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "methyl (2Z)-cyano[3-(3-fluoro-4'-methoxybiphenyl-4-yl)-4-oxo-1,3-thiazolidin-2-ylidene]acetate" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YLW _cell.length_a 90.721 _cell.length_b 90.721 _cell.length_c 123.02 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H15 F N2 O4 S' _chem_comp.formula_weight 398.408 _chem_comp.id 52Y _chem_comp.mon_nstd_flag . _chem_comp.name "methyl (2Z)-cyano[3-(3-fluoro-4'-methoxybiphenyl-4-yl)-4-oxo-1,3-thiazolidin-2-ylidene]acetate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 52Y sing 1 n n C7 C6 52Y doub 2 n y C7 C2 52Y sing 3 n y O1 C2 52Y sing 4 n n C6 C5 52Y sing 5 n y C2 C3 52Y doub 6 n y F20 C10 52Y sing 7 n n C9 C10 52Y sing 8 n y C9 C8 52Y doub 9 n y C5 C8 52Y sing 10 n n C5 C4 52Y doub 11 n y C3 C4 52Y sing 12 n y C10 C11 52Y doub 13 n y C8 C13 52Y sing 14 n y O19 C15 52Y doub 15 n n C11 N14 52Y sing 16 n n C11 C12 52Y sing 17 n y C15 N14 52Y sing 18 n n C15 C16 52Y sing 19 n n C13 C12 52Y doub 20 n y N14 C18 52Y sing 21 n n C16 S17 52Y sing 22 n n N24 C23 52Y trip 23 n n C18 S17 52Y sing 24 n n C18 C21 52Y doub 25 z n C23 C21 52Y sing 26 n n C21 C22 52Y sing 27 n n C22 O26 52Y doub 28 n n C22 O25 52Y sing 29 n n O25 C27 52Y sing 30 n n C1 H1 52Y sing 31 n n C1 H2 52Y sing 32 n n C1 H3 52Y sing 33 n n C3 H4 52Y sing 34 n n C4 H5 52Y sing 35 n n C6 H6 52Y sing 36 n n C7 H7 52Y sing 37 n n C9 H8 52Y sing 38 n n C12 H9 52Y sing 39 n n C13 H10 52Y sing 40 n n C16 H11 52Y sing 41 n n C16 H12 52Y sing 42 n n C27 H13 52Y sing 43 n n C27 H14 52Y sing 44 n n C27 H15 52Y sing 45 n n # _atom_sites.entry_id 4YLW _atom_sites.fract_transf_matrix[1][1] 0.011023 _atom_sites.fract_transf_matrix[1][2] 0.006364 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 52Y A 1 401 1 52Y 52Y . C 3 FMN A 1 402 1 FMN FMN . D 4 ORO A 1 403 2 ORO ORO . E 5 SO4 A 1 404 1 SO4 SO4 . F 5 SO4 A 1 405 2 SO4 SO4 . G 5 SO4 A 1 406 4 SO4 SO4 . H 5 SO4 A 1 407 5 SO4 SO4 . I 5 SO4 A 1 408 6 SO4 SO4 . J 5 SO4 A 1 409 8 SO4 SO4 . K 5 SO4 A 1 410 9 SO4 SO4 . L 5 SO4 A 1 411 11 SO4 SO4 . M 5 SO4 A 1 412 12 SO4 SO4 . N 5 SO4 A 1 413 13 SO4 SO4 . O 6 HOH A 1 501 104 HOH HOH . O 6 HOH A 2 502 115 HOH HOH . O 6 HOH A 3 503 43 HOH HOH . O 6 HOH A 4 504 18 HOH HOH . O 6 HOH A 5 505 130 HOH HOH . O 6 HOH A 6 506 68 HOH HOH . O 6 HOH A 7 507 65 HOH HOH . O 6 HOH A 8 508 113 HOH HOH . O 6 HOH A 9 509 109 HOH HOH . O 6 HOH A 10 510 110 HOH HOH . O 6 HOH A 11 511 24 HOH HOH . O 6 HOH A 12 512 90 HOH HOH . O 6 HOH A 13 513 119 HOH HOH . O 6 HOH A 14 514 77 HOH HOH . O 6 HOH A 15 515 14 HOH HOH . O 6 HOH A 16 516 50 HOH HOH . O 6 HOH A 17 517 2 HOH HOH . O 6 HOH A 18 518 25 HOH HOH . O 6 HOH A 19 519 137 HOH HOH . O 6 HOH A 20 520 92 HOH HOH . O 6 HOH A 21 521 97 HOH HOH . O 6 HOH A 22 522 62 HOH HOH . O 6 HOH A 23 523 16 HOH HOH . O 6 HOH A 24 524 61 HOH HOH . O 6 HOH A 25 525 7 HOH HOH . O 6 HOH A 26 526 128 HOH HOH . O 6 HOH A 27 527 21 HOH HOH . O 6 HOH A 28 528 54 HOH HOH . O 6 HOH A 29 529 10 HOH HOH . O 6 HOH A 30 530 129 HOH HOH . O 6 HOH A 31 531 127 HOH HOH . O 6 HOH A 32 532 33 HOH HOH . O 6 HOH A 33 533 23 HOH HOH . O 6 HOH A 34 534 83 HOH HOH . O 6 HOH A 35 535 12 HOH HOH . O 6 HOH A 36 536 5 HOH HOH . O 6 HOH A 37 537 69 HOH HOH . O 6 HOH A 38 538 121 HOH HOH . O 6 HOH A 39 539 105 HOH HOH . O 6 HOH A 40 540 93 HOH HOH . O 6 HOH A 41 541 108 HOH HOH . O 6 HOH A 42 542 152 HOH HOH . O 6 HOH A 43 543 76 HOH HOH . O 6 HOH A 44 544 15 HOH HOH . O 6 HOH A 45 545 34 HOH HOH . O 6 HOH A 46 546 48 HOH HOH . O 6 HOH A 47 547 100 HOH HOH . O 6 HOH A 48 548 44 HOH HOH . O 6 HOH A 49 549 49 HOH HOH . O 6 HOH A 50 550 39 HOH HOH . O 6 HOH A 51 551 55 HOH HOH . O 6 HOH A 52 552 111 HOH HOH . O 6 HOH A 53 553 56 HOH HOH . O 6 HOH A 54 554 124 HOH HOH . O 6 HOH A 55 555 38 HOH HOH . O 6 HOH A 56 556 40 HOH HOH . O 6 HOH A 57 557 67 HOH HOH . O 6 HOH A 58 558 70 HOH HOH . O 6 HOH A 59 559 13 HOH HOH . O 6 HOH A 60 560 148 HOH HOH . O 6 HOH A 61 561 131 HOH HOH . O 6 HOH A 62 562 79 HOH HOH . O 6 HOH A 63 563 31 HOH HOH . O 6 HOH A 64 564 32 HOH HOH . O 6 HOH A 65 565 75 HOH HOH . O 6 HOH A 66 566 66 HOH HOH . O 6 HOH A 67 567 135 HOH HOH . O 6 HOH A 68 568 19 HOH HOH . O 6 HOH A 69 569 9 HOH HOH . O 6 HOH A 70 570 30 HOH HOH . O 6 HOH A 71 571 37 HOH HOH . O 6 HOH A 72 572 47 HOH HOH . O 6 HOH A 73 573 112 HOH HOH . O 6 HOH A 74 574 4 HOH HOH . O 6 HOH A 75 575 3 HOH HOH . O 6 HOH A 76 576 134 HOH HOH . O 6 HOH A 77 577 46 HOH HOH . O 6 HOH A 78 578 87 HOH HOH . O 6 HOH A 79 579 78 HOH HOH . O 6 HOH A 80 580 17 HOH HOH . O 6 HOH A 81 581 116 HOH HOH . O 6 HOH A 82 582 71 HOH HOH . O 6 HOH A 83 583 64 HOH HOH . O 6 HOH A 84 584 74 HOH HOH . O 6 HOH A 85 585 81 HOH HOH . O 6 HOH A 86 586 86 HOH HOH . O 6 HOH A 87 587 20 HOH HOH . O 6 HOH A 88 588 99 HOH HOH . O 6 HOH A 89 589 125 HOH HOH . O 6 HOH A 90 590 85 HOH HOH . O 6 HOH A 91 591 91 HOH HOH . O 6 HOH A 92 592 53 HOH HOH . O 6 HOH A 93 593 35 HOH HOH . O 6 HOH A 94 594 95 HOH HOH . O 6 HOH A 95 595 102 HOH HOH . O 6 HOH A 96 596 94 HOH HOH . O 6 HOH A 97 597 22 HOH HOH . O 6 HOH A 98 598 133 HOH HOH . O 6 HOH A 99 599 36 HOH HOH . O 6 HOH A 100 600 101 HOH HOH . O 6 HOH A 101 601 145 HOH HOH . O 6 HOH A 102 602 28 HOH HOH . O 6 HOH A 103 603 84 HOH HOH . O 6 HOH A 104 604 98 HOH HOH . O 6 HOH A 105 605 96 HOH HOH . O 6 HOH A 106 606 103 HOH HOH . O 6 HOH A 107 607 106 HOH HOH . O 6 HOH A 108 608 114 HOH HOH . O 6 HOH A 109 609 29 HOH HOH . O 6 HOH A 110 610 11 HOH HOH . O 6 HOH A 111 611 58 HOH HOH . O 6 HOH A 112 612 80 HOH HOH . O 6 HOH A 113 613 146 HOH HOH . O 6 HOH A 114 614 6 HOH HOH . O 6 HOH A 115 615 118 HOH HOH . O 6 HOH A 116 616 143 HOH HOH . O 6 HOH A 117 617 57 HOH HOH . O 6 HOH A 118 618 1 HOH HOH . O 6 HOH A 119 619 72 HOH HOH . O 6 HOH A 120 620 26 HOH HOH . O 6 HOH A 121 621 88 HOH HOH . O 6 HOH A 122 622 144 HOH HOH . O 6 HOH A 123 623 142 HOH HOH . O 6 HOH A 124 624 51 HOH HOH . O 6 HOH A 125 625 89 HOH HOH . O 6 HOH A 126 626 42 HOH HOH . O 6 HOH A 127 627 27 HOH HOH . O 6 HOH A 128 628 120 HOH HOH . O 6 HOH A 129 629 45 HOH HOH . O 6 HOH A 130 630 107 HOH HOH . O 6 HOH A 131 631 63 HOH HOH . O 6 HOH A 132 632 138 HOH HOH . O 6 HOH A 133 633 41 HOH HOH . O 6 HOH A 134 634 82 HOH HOH . O 6 HOH A 135 635 140 HOH HOH . O 6 HOH A 136 636 60 HOH HOH . O 6 HOH A 137 637 122 HOH HOH . O 6 HOH A 138 638 52 HOH HOH . O 6 HOH A 139 639 147 HOH HOH . O 6 HOH A 140 640 151 HOH HOH . O 6 HOH A 141 641 153 HOH HOH . O 6 HOH A 142 642 132 HOH HOH . O 6 HOH A 143 643 8 HOH HOH . O 6 HOH A 144 644 136 HOH HOH . O 6 HOH A 145 645 150 HOH HOH . O 6 HOH A 146 646 59 HOH HOH . O 6 HOH A 147 647 139 HOH HOH . O 6 HOH A 148 648 149 HOH HOH . O 6 HOH A 149 649 117 HOH HOH . O 6 HOH A 150 650 73 HOH HOH . O 6 HOH A 151 651 126 HOH HOH . O 6 HOH A 152 652 123 HOH HOH . O 6 HOH A 153 653 141 HOH HOH . O 6 HOH A 154 654 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 52Y . . . B 2 30.917 14.323 -3.057 1 53.5 ? C1 52Y 401 A 1 HETATM 2 O O1 52Y . . . B 2 31.674 14.193 -1.851 1 47.72 ? O1 52Y 401 A 1 HETATM 3 C C2 52Y . . . B 2 31.728 12.91 -1.245 1 37.67 ? C2 52Y 401 A 1 HETATM 4 C C3 52Y . . . B 2 31.989 12.84 0.145 1 35.28 ? C3 52Y 401 A 1 HETATM 5 C C4 52Y . . . B 2 31.959 11.626 0.794 1 32.21 ? C4 52Y 401 A 1 HETATM 6 C C5 52Y . . . B 2 31.799 10.489 0.036 1 32.17 ? C5 52Y 401 A 1 HETATM 7 C C6 52Y . . . B 2 31.525 10.475 -1.34 1 30.66 ? C6 52Y 401 A 1 HETATM 8 C C7 52Y . . . B 2 31.477 11.71 -1.996 1 39.16 ? C7 52Y 401 A 1 HETATM 9 C C8 52Y . . . B 2 31.824 9.189 0.717 1 28.95 ? C8 52Y 401 A 1 HETATM 10 C C9 52Y . . . B 2 32.241 8.143 -0.062 1 30.77 ? C9 52Y 401 A 1 HETATM 11 C C10 52Y . . . B 2 32.236 6.884 0.533 1 35.69 ? C10 52Y 401 A 1 HETATM 12 C C11 52Y . . . B 2 31.829 6.696 1.883 1 41.2 ? C11 52Y 401 A 1 HETATM 13 C C12 52Y . . . B 2 31.381 7.788 2.669 1 36.36 ? C12 52Y 401 A 1 HETATM 14 C C13 52Y . . . B 2 31.441 9.04 2.012 1 32.52 ? C13 52Y 401 A 1 HETATM 15 N N14 52Y . . . B 2 31.758 5.366 2.422 1 36.23 ? N14 52Y 401 A 1 HETATM 16 C C15 52Y . . . B 2 30.758 4.55 1.924 1 43.08 ? C15 52Y 401 A 1 HETATM 17 C C16 52Y . . . B 2 30.685 3.177 2.618 1 37.22 ? C16 52Y 401 A 1 HETATM 18 S S17 52Y . . . B 2 31.755 3.358 4.004 1 42.49 ? S17 52Y 401 A 1 HETATM 19 C C18 52Y . . . B 2 32.462 4.866 3.476 1 40.73 ? C18 52Y 401 A 1 HETATM 20 O O19 52Y . . . B 2 29.939 4.858 1.01 1 39.86 ? O19 52Y 401 A 1 HETATM 21 F F20 52Y . . . B 2 32.628 5.822 -0.218 1 60.4 ? F20 52Y 401 A 1 HETATM 22 C C21 52Y . . . B 2 33.519 5.518 4.055 1 37.47 ? C21 52Y 401 A 1 HETATM 23 C C22 52Y . . . B 2 34.158 4.867 5.226 1 45.45 ? C22 52Y 401 A 1 HETATM 24 C C23 52Y . . . B 2 34.109 6.57 3.64 1 36.9 ? C23 52Y 401 A 1 HETATM 25 N N24 52Y . . . B 2 34.672 7.581 3.35 1 32.46 ? N24 52Y 401 A 1 HETATM 26 O O25 52Y . . . B 2 35.336 5.418 5.857 1 50.25 ? O25 52Y 401 A 1 HETATM 27 O O26 52Y . . . B 2 33.656 3.848 5.705 1 43.61 ? O26 52Y 401 A 1 HETATM 28 C C27 52Y . . . B 2 35.934 4.788 7.014 1 54.82 ? C27 52Y 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #