data_4YLW # _model_server_result.job_id -kKMoXAJaB6VtEfZqI4eVA _model_server_result.datetime_utc '2025-07-07 21:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ylw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4YLW # _exptl.entry_id 4YLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YLW _cell.length_a 90.721 _cell.length_b 90.721 _cell.length_c 123.02 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 115 n n N1 C10 FMN doub 116 n n C2 O2 FMN doub 117 n n C2 N3 FMN sing 118 n n N3 C4 FMN sing 119 n n N3 HN3 FMN sing 120 n n C4 O4 FMN doub 121 n n C4 C4A FMN sing 122 n n C4A N5 FMN doub 123 n n C4A C10 FMN sing 124 n n N5 C5A FMN sing 125 n n C5A C6 FMN doub 126 n y C5A C9A FMN sing 127 n y C6 C7 FMN sing 128 n y C6 H6 FMN sing 129 n n C7 C7M FMN sing 130 n n C7 C8 FMN doub 131 n y C7M HM71 FMN sing 132 n n C7M HM72 FMN sing 133 n n C7M HM73 FMN sing 134 n n C8 C8M FMN sing 135 n n C8 C9 FMN sing 136 n y C8M HM81 FMN sing 137 n n C8M HM82 FMN sing 138 n n C8M HM83 FMN sing 139 n n C9 C9A FMN doub 140 n y C9 H9 FMN sing 141 n n C9A N10 FMN sing 142 n n N10 C10 FMN sing 143 n n N10 C1' FMN sing 144 n n C1' C2' FMN sing 145 n n C1' "H1'1" FMN sing 146 n n C1' "H1'2" FMN sing 147 n n C2' O2' FMN sing 148 n n C2' C3' FMN sing 149 n n C2' H2' FMN sing 150 n n O2' HO2' FMN sing 151 n n C3' O3' FMN sing 152 n n C3' C4' FMN sing 153 n n C3' H3' FMN sing 154 n n O3' HO3' FMN sing 155 n n C4' O4' FMN sing 156 n n C4' C5' FMN sing 157 n n C4' H4' FMN sing 158 n n O4' HO4' FMN sing 159 n n C5' O5' FMN sing 160 n n C5' "H5'1" FMN sing 161 n n C5' "H5'2" FMN sing 162 n n O5' P FMN sing 163 n n P O1P FMN doub 164 n n P O2P FMN sing 165 n n P O3P FMN sing 166 n n O2P HOP2 FMN sing 167 n n O3P HOP3 FMN sing 168 n n # _atom_sites.entry_id 4YLW _atom_sites.fract_transf_matrix[1][1] 0.011023 _atom_sites.fract_transf_matrix[1][2] 0.006364 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 52Y A 1 401 1 52Y 52Y . C 3 FMN A 1 402 1 FMN FMN . D 4 ORO A 1 403 2 ORO ORO . E 5 SO4 A 1 404 1 SO4 SO4 . F 5 SO4 A 1 405 2 SO4 SO4 . G 5 SO4 A 1 406 4 SO4 SO4 . H 5 SO4 A 1 407 5 SO4 SO4 . I 5 SO4 A 1 408 6 SO4 SO4 . J 5 SO4 A 1 409 8 SO4 SO4 . K 5 SO4 A 1 410 9 SO4 SO4 . L 5 SO4 A 1 411 11 SO4 SO4 . M 5 SO4 A 1 412 12 SO4 SO4 . N 5 SO4 A 1 413 13 SO4 SO4 . O 6 HOH A 1 501 104 HOH HOH . O 6 HOH A 2 502 115 HOH HOH . O 6 HOH A 3 503 43 HOH HOH . O 6 HOH A 4 504 18 HOH HOH . O 6 HOH A 5 505 130 HOH HOH . O 6 HOH A 6 506 68 HOH HOH . O 6 HOH A 7 507 65 HOH HOH . O 6 HOH A 8 508 113 HOH HOH . O 6 HOH A 9 509 109 HOH HOH . O 6 HOH A 10 510 110 HOH HOH . O 6 HOH A 11 511 24 HOH HOH . O 6 HOH A 12 512 90 HOH HOH . O 6 HOH A 13 513 119 HOH HOH . O 6 HOH A 14 514 77 HOH HOH . O 6 HOH A 15 515 14 HOH HOH . O 6 HOH A 16 516 50 HOH HOH . O 6 HOH A 17 517 2 HOH HOH . O 6 HOH A 18 518 25 HOH HOH . O 6 HOH A 19 519 137 HOH HOH . O 6 HOH A 20 520 92 HOH HOH . O 6 HOH A 21 521 97 HOH HOH . O 6 HOH A 22 522 62 HOH HOH . O 6 HOH A 23 523 16 HOH HOH . O 6 HOH A 24 524 61 HOH HOH . O 6 HOH A 25 525 7 HOH HOH . O 6 HOH A 26 526 128 HOH HOH . O 6 HOH A 27 527 21 HOH HOH . O 6 HOH A 28 528 54 HOH HOH . O 6 HOH A 29 529 10 HOH HOH . O 6 HOH A 30 530 129 HOH HOH . O 6 HOH A 31 531 127 HOH HOH . O 6 HOH A 32 532 33 HOH HOH . O 6 HOH A 33 533 23 HOH HOH . O 6 HOH A 34 534 83 HOH HOH . O 6 HOH A 35 535 12 HOH HOH . O 6 HOH A 36 536 5 HOH HOH . O 6 HOH A 37 537 69 HOH HOH . O 6 HOH A 38 538 121 HOH HOH . O 6 HOH A 39 539 105 HOH HOH . O 6 HOH A 40 540 93 HOH HOH . O 6 HOH A 41 541 108 HOH HOH . O 6 HOH A 42 542 152 HOH HOH . O 6 HOH A 43 543 76 HOH HOH . O 6 HOH A 44 544 15 HOH HOH . O 6 HOH A 45 545 34 HOH HOH . O 6 HOH A 46 546 48 HOH HOH . O 6 HOH A 47 547 100 HOH HOH . O 6 HOH A 48 548 44 HOH HOH . O 6 HOH A 49 549 49 HOH HOH . O 6 HOH A 50 550 39 HOH HOH . O 6 HOH A 51 551 55 HOH HOH . O 6 HOH A 52 552 111 HOH HOH . O 6 HOH A 53 553 56 HOH HOH . O 6 HOH A 54 554 124 HOH HOH . O 6 HOH A 55 555 38 HOH HOH . O 6 HOH A 56 556 40 HOH HOH . O 6 HOH A 57 557 67 HOH HOH . O 6 HOH A 58 558 70 HOH HOH . O 6 HOH A 59 559 13 HOH HOH . O 6 HOH A 60 560 148 HOH HOH . O 6 HOH A 61 561 131 HOH HOH . O 6 HOH A 62 562 79 HOH HOH . O 6 HOH A 63 563 31 HOH HOH . O 6 HOH A 64 564 32 HOH HOH . O 6 HOH A 65 565 75 HOH HOH . O 6 HOH A 66 566 66 HOH HOH . O 6 HOH A 67 567 135 HOH HOH . O 6 HOH A 68 568 19 HOH HOH . O 6 HOH A 69 569 9 HOH HOH . O 6 HOH A 70 570 30 HOH HOH . O 6 HOH A 71 571 37 HOH HOH . O 6 HOH A 72 572 47 HOH HOH . O 6 HOH A 73 573 112 HOH HOH . O 6 HOH A 74 574 4 HOH HOH . O 6 HOH A 75 575 3 HOH HOH . O 6 HOH A 76 576 134 HOH HOH . O 6 HOH A 77 577 46 HOH HOH . O 6 HOH A 78 578 87 HOH HOH . O 6 HOH A 79 579 78 HOH HOH . O 6 HOH A 80 580 17 HOH HOH . O 6 HOH A 81 581 116 HOH HOH . O 6 HOH A 82 582 71 HOH HOH . O 6 HOH A 83 583 64 HOH HOH . O 6 HOH A 84 584 74 HOH HOH . O 6 HOH A 85 585 81 HOH HOH . O 6 HOH A 86 586 86 HOH HOH . O 6 HOH A 87 587 20 HOH HOH . O 6 HOH A 88 588 99 HOH HOH . O 6 HOH A 89 589 125 HOH HOH . O 6 HOH A 90 590 85 HOH HOH . O 6 HOH A 91 591 91 HOH HOH . O 6 HOH A 92 592 53 HOH HOH . O 6 HOH A 93 593 35 HOH HOH . O 6 HOH A 94 594 95 HOH HOH . O 6 HOH A 95 595 102 HOH HOH . O 6 HOH A 96 596 94 HOH HOH . O 6 HOH A 97 597 22 HOH HOH . O 6 HOH A 98 598 133 HOH HOH . O 6 HOH A 99 599 36 HOH HOH . O 6 HOH A 100 600 101 HOH HOH . O 6 HOH A 101 601 145 HOH HOH . O 6 HOH A 102 602 28 HOH HOH . O 6 HOH A 103 603 84 HOH HOH . O 6 HOH A 104 604 98 HOH HOH . O 6 HOH A 105 605 96 HOH HOH . O 6 HOH A 106 606 103 HOH HOH . O 6 HOH A 107 607 106 HOH HOH . O 6 HOH A 108 608 114 HOH HOH . O 6 HOH A 109 609 29 HOH HOH . O 6 HOH A 110 610 11 HOH HOH . O 6 HOH A 111 611 58 HOH HOH . O 6 HOH A 112 612 80 HOH HOH . O 6 HOH A 113 613 146 HOH HOH . O 6 HOH A 114 614 6 HOH HOH . O 6 HOH A 115 615 118 HOH HOH . O 6 HOH A 116 616 143 HOH HOH . O 6 HOH A 117 617 57 HOH HOH . O 6 HOH A 118 618 1 HOH HOH . O 6 HOH A 119 619 72 HOH HOH . O 6 HOH A 120 620 26 HOH HOH . O 6 HOH A 121 621 88 HOH HOH . O 6 HOH A 122 622 144 HOH HOH . O 6 HOH A 123 623 142 HOH HOH . O 6 HOH A 124 624 51 HOH HOH . O 6 HOH A 125 625 89 HOH HOH . O 6 HOH A 126 626 42 HOH HOH . O 6 HOH A 127 627 27 HOH HOH . O 6 HOH A 128 628 120 HOH HOH . O 6 HOH A 129 629 45 HOH HOH . O 6 HOH A 130 630 107 HOH HOH . O 6 HOH A 131 631 63 HOH HOH . O 6 HOH A 132 632 138 HOH HOH . O 6 HOH A 133 633 41 HOH HOH . O 6 HOH A 134 634 82 HOH HOH . O 6 HOH A 135 635 140 HOH HOH . O 6 HOH A 136 636 60 HOH HOH . O 6 HOH A 137 637 122 HOH HOH . O 6 HOH A 138 638 52 HOH HOH . O 6 HOH A 139 639 147 HOH HOH . O 6 HOH A 140 640 151 HOH HOH . O 6 HOH A 141 641 153 HOH HOH . O 6 HOH A 142 642 132 HOH HOH . O 6 HOH A 143 643 8 HOH HOH . O 6 HOH A 144 644 136 HOH HOH . O 6 HOH A 145 645 150 HOH HOH . O 6 HOH A 146 646 59 HOH HOH . O 6 HOH A 147 647 139 HOH HOH . O 6 HOH A 148 648 149 HOH HOH . O 6 HOH A 149 649 117 HOH HOH . O 6 HOH A 150 650 73 HOH HOH . O 6 HOH A 151 651 126 HOH HOH . O 6 HOH A 152 652 123 HOH HOH . O 6 HOH A 153 653 141 HOH HOH . O 6 HOH A 154 654 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 34.912 24.233 -8.684 1 10.19 ? N1 FMN 402 A 1 HETATM 2 C C2 FMN . . . C 3 35.716 24.166 -9.787 1 11.97 ? C2 FMN 402 A 1 HETATM 3 O O2 FMN . . . C 3 35.274 24.636 -10.851 1 12.19 ? O2 FMN 402 A 1 HETATM 4 N N3 FMN . . . C 3 36.965 23.573 -9.71 1 11.43 ? N3 FMN 402 A 1 HETATM 5 C C4 FMN . . . C 3 37.501 23.097 -8.609 1 12.29 ? C4 FMN 402 A 1 HETATM 6 O O4 FMN . . . C 3 38.67 22.54 -8.617 1 12.09 ? O4 FMN 402 A 1 HETATM 7 C C4A FMN . . . C 3 36.729 23.139 -7.403 1 10.85 ? C4A FMN 402 A 1 HETATM 8 N N5 FMN . . . C 3 37.225 22.717 -6.166 1 12.64 ? N5 FMN 402 A 1 HETATM 9 C C5A FMN . . . C 3 36.419 22.669 -5.109 1 11.86 ? C5A FMN 402 A 1 HETATM 10 C C6 FMN . . . C 3 36.832 22.134 -3.902 1 11.38 ? C6 FMN 402 A 1 HETATM 11 C C7 FMN . . . C 3 36.021 22.111 -2.795 1 12.06 ? C7 FMN 402 A 1 HETATM 12 C C7M FMN . . . C 3 36.495 21.493 -1.538 1 13.65 ? C7M FMN 402 A 1 HETATM 13 C C8 FMN . . . C 3 34.652 22.628 -2.866 1 11.91 ? C8 FMN 402 A 1 HETATM 14 C C8M FMN . . . C 3 33.723 22.571 -1.668 1 11.88 ? C8M FMN 402 A 1 HETATM 15 C C9 FMN . . . C 3 34.215 23.122 -4.053 1 12.37 ? C9 FMN 402 A 1 HETATM 16 C C9A FMN . . . C 3 35.068 23.192 -5.175 1 10.97 ? C9A FMN 402 A 1 HETATM 17 N N10 FMN . . . C 3 34.597 23.736 -6.397 1 10.57 ? N10 FMN 402 A 1 HETATM 18 C C10 FMN . . . C 3 35.344 23.693 -7.533 1 10.44 ? C10 FMN 402 A 1 HETATM 19 C C1' FMN . . . C 3 33.267 24.316 -6.478 1 9.98 ? C1' FMN 402 A 1 HETATM 20 C C2' FMN . . . C 3 32.167 23.307 -6.624 1 10.14 ? C2' FMN 402 A 1 HETATM 21 O O2' FMN . . . C 3 32.286 22.705 -7.929 1 11.01 ? O2' FMN 402 A 1 HETATM 22 C C3' FMN . . . C 3 30.775 23.974 -6.609 1 9.65 ? C3' FMN 402 A 1 HETATM 23 O O3' FMN . . . C 3 30.726 24.987 -7.659 1 10.33 ? O3' FMN 402 A 1 HETATM 24 C C4' FMN . . . C 3 30.493 24.714 -5.29 1 9.53 ? C4' FMN 402 A 1 HETATM 25 O O4' FMN . . . C 3 31.103 24.044 -4.175 1 9.88 ? O4' FMN 402 A 1 HETATM 26 C C5' FMN . . . C 3 28.973 24.854 -5.033 1 9.98 ? C5' FMN 402 A 1 HETATM 27 O O5' FMN . . . C 3 28.321 23.597 -4.909 1 10.43 ? O5' FMN 402 A 1 HETATM 28 P P FMN . . . C 3 28.021 22.921 -3.482 1 11.47 ? P FMN 402 A 1 HETATM 29 O O1P FMN . . . C 3 29.365 22.428 -2.903 1 12.21 ? O1P FMN 402 A 1 HETATM 30 O O2P FMN . . . C 3 27.057 21.788 -3.863 1 10.63 ? O2P FMN 402 A 1 HETATM 31 O O3P FMN . . . C 3 27.386 24.008 -2.629 1 11.47 ? O3P FMN 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 626 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #