data_4YLZ # _model_server_result.job_id 9B6V5_siSTS_091tnwxobg _model_server_result.datetime_utc '2024-10-28 02:21:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ylz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":404}' # _entry.id 4YLZ # _exptl.entry_id 4YLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.05 _cell.angle_gamma 90 _cell.entry_id 4YLZ _cell.length_a 45.083 _cell.length_b 127.64 _cell.length_c 45.102 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,P 1 1 B,F,K,L,Q 2 1 C,G,M,R 3 1 D,H,N,O,S 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NAG GAL C1 O1 . O3 HO3 . sing 3 ? 2 4 3 GAL NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E BGC 1 E 1 BGC A 401 LAT 2 n E GAL 2 E 2 GAL A 401 LAT 2 n E NAG 3 E 3 NAG A 402 NAG 2 n E GAL 4 E 4 GAL A 403 GAL 2 n F BGC 1 F 1 BGC B 401 LAT 2 n F GAL 2 F 2 GAL B 401 LAT 2 n F NAG 3 F 3 NAG B 402 NAG 2 n F GAL 4 F 4 GAL B 403 GAL 2 n G BGC 1 G 1 BGC C 401 LAT 2 n G GAL 2 G 2 GAL C 401 LAT 2 n G NAG 3 G 3 NAG C 402 NAG 2 n G GAL 4 G 4 GAL C 403 GAL 2 n H BGC 1 H 1 BGC D 401 LAT 2 n H GAL 2 H 2 GAL D 401 LAT 2 n H NAG 3 H 3 NAG D 402 NAG 2 n H GAL 4 H 4 GAL D 403 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E O4 BGC . E BGC 1 1_555 E C1 GAL . E GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing covale ? covale2 E O3 GAL . E GAL 2 1_555 E C1 NAG . E NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 sing covale ? covale3 E O4 NAG . E NAG 3 1_555 E C1 GAL . E GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 sing covale ? covale4 F O4 BGC . F BGC 1 1_555 F C1 GAL . F GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing covale ? covale5 F O3 GAL . F GAL 2 1_555 F C1 NAG . F NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 sing covale ? covale6 F O4 NAG . F NAG 3 1_555 F C1 GAL . F GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 sing covale ? covale7 G O4 BGC . G BGC 1 1_555 G C1 GAL . G GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing covale ? covale8 G O3 GAL . G GAL 2 1_555 G C1 NAG . G NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 sing covale ? covale9 G O4 NAG . G NAG 3 1_555 G C1 GAL . G GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 sing covale ? covale10 H O4 BGC . H BGC 1 1_555 H C1 GAL . H GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 sing covale ? covale11 H O3 GAL . H GAL 2 1_555 H C1 NAG . H NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 sing covale ? covale12 H O4 NAG . H NAG 3 1_555 H C1 GAL . H GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 sing # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 381 n n S O2 SO4 doub 382 n n S O3 SO4 sing 383 n n S O4 SO4 sing 384 n n # _atom_sites.entry_id 4YLZ _atom_sites.fract_transf_matrix[1][1] 0.022182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00235 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GOL A 1 404 501 GOL GOL . J 4 SO4 A 1 405 3 SO4 SO4 . K 4 SO4 B 1 404 1 SO4 SO4 . L 4 SO4 B 1 405 6 SO4 SO4 . M 4 SO4 C 1 404 4 SO4 SO4 . N 4 SO4 D 1 404 2 SO4 SO4 . O 4 SO4 D 1 405 5 SO4 SO4 . P 5 HOH A 1 501 54 HOH HOH . P 5 HOH A 2 502 45 HOH HOH . P 5 HOH A 3 503 80 HOH HOH . P 5 HOH A 4 504 52 HOH HOH . P 5 HOH A 5 505 63 HOH HOH . P 5 HOH A 6 506 68 HOH HOH . P 5 HOH A 7 507 21 HOH HOH . P 5 HOH A 8 508 13 HOH HOH . P 5 HOH A 9 509 112 HOH HOH . P 5 HOH A 10 510 3 HOH HOH . P 5 HOH A 11 511 71 HOH HOH . P 5 HOH A 12 512 28 HOH HOH . P 5 HOH A 13 513 22 HOH HOH . P 5 HOH A 14 514 11 HOH HOH . P 5 HOH A 15 515 126 HOH HOH . P 5 HOH A 16 516 70 HOH HOH . P 5 HOH A 17 517 60 HOH HOH . P 5 HOH A 18 518 79 HOH HOH . P 5 HOH A 19 519 44 HOH HOH . P 5 HOH A 20 520 134 HOH HOH . P 5 HOH A 21 521 64 HOH HOH . P 5 HOH A 22 522 61 HOH HOH . P 5 HOH A 23 523 34 HOH HOH . P 5 HOH A 24 524 117 HOH HOH . P 5 HOH A 25 525 124 HOH HOH . P 5 HOH A 26 526 49 HOH HOH . P 5 HOH A 27 527 108 HOH HOH . P 5 HOH A 28 528 104 HOH HOH . P 5 HOH A 29 529 106 HOH HOH . Q 5 HOH B 1 501 18 HOH HOH . Q 5 HOH B 2 502 46 HOH HOH . Q 5 HOH B 3 503 42 HOH HOH . Q 5 HOH B 4 504 127 HOH HOH . Q 5 HOH B 5 505 92 HOH HOH . Q 5 HOH B 6 506 97 HOH HOH . Q 5 HOH B 7 507 4 HOH HOH . Q 5 HOH B 8 508 26 HOH HOH . Q 5 HOH B 9 509 2 HOH HOH . Q 5 HOH B 10 510 75 HOH HOH . Q 5 HOH B 11 511 27 HOH HOH . Q 5 HOH B 12 512 65 HOH HOH . Q 5 HOH B 13 513 19 HOH HOH . Q 5 HOH B 14 514 9 HOH HOH . Q 5 HOH B 15 515 30 HOH HOH . Q 5 HOH B 16 516 31 HOH HOH . Q 5 HOH B 17 517 130 HOH HOH . Q 5 HOH B 18 518 91 HOH HOH . Q 5 HOH B 19 519 36 HOH HOH . Q 5 HOH B 20 520 47 HOH HOH . Q 5 HOH B 21 521 120 HOH HOH . Q 5 HOH B 22 522 132 HOH HOH . Q 5 HOH B 23 523 83 HOH HOH . Q 5 HOH B 24 524 5 HOH HOH . Q 5 HOH B 25 525 123 HOH HOH . Q 5 HOH B 26 526 23 HOH HOH . Q 5 HOH B 27 527 69 HOH HOH . Q 5 HOH B 28 528 93 HOH HOH . Q 5 HOH B 29 529 137 HOH HOH . Q 5 HOH B 30 530 85 HOH HOH . Q 5 HOH B 31 531 35 HOH HOH . Q 5 HOH B 32 532 29 HOH HOH . Q 5 HOH B 33 533 72 HOH HOH . Q 5 HOH B 34 534 67 HOH HOH . Q 5 HOH B 35 535 141 HOH HOH . Q 5 HOH B 36 536 94 HOH HOH . Q 5 HOH B 37 537 109 HOH HOH . Q 5 HOH B 38 538 82 HOH HOH . Q 5 HOH B 39 539 128 HOH HOH . Q 5 HOH B 40 540 89 HOH HOH . Q 5 HOH B 41 541 88 HOH HOH . Q 5 HOH B 42 542 73 HOH HOH . Q 5 HOH B 43 543 142 HOH HOH . Q 5 HOH B 44 544 119 HOH HOH . Q 5 HOH B 45 545 129 HOH HOH . Q 5 HOH B 46 546 118 HOH HOH . Q 5 HOH B 47 547 90 HOH HOH . Q 5 HOH B 48 548 98 HOH HOH . Q 5 HOH B 49 549 131 HOH HOH . Q 5 HOH B 50 550 116 HOH HOH . Q 5 HOH B 51 551 100 HOH HOH . R 5 HOH C 1 501 43 HOH HOH . R 5 HOH C 2 502 50 HOH HOH . R 5 HOH C 3 503 14 HOH HOH . R 5 HOH C 4 504 78 HOH HOH . R 5 HOH C 5 505 140 HOH HOH . R 5 HOH C 6 506 25 HOH HOH . R 5 HOH C 7 507 6 HOH HOH . R 5 HOH C 8 508 15 HOH HOH . R 5 HOH C 9 509 38 HOH HOH . R 5 HOH C 10 510 125 HOH HOH . R 5 HOH C 11 511 10 HOH HOH . R 5 HOH C 12 512 33 HOH HOH . R 5 HOH C 13 513 121 HOH HOH . R 5 HOH C 14 514 87 HOH HOH . R 5 HOH C 15 515 1 HOH HOH . R 5 HOH C 16 516 17 HOH HOH . R 5 HOH C 17 517 57 HOH HOH . R 5 HOH C 18 518 77 HOH HOH . R 5 HOH C 19 519 20 HOH HOH . R 5 HOH C 20 520 48 HOH HOH . R 5 HOH C 21 521 86 HOH HOH . R 5 HOH C 22 522 76 HOH HOH . R 5 HOH C 23 523 7 HOH HOH . R 5 HOH C 24 524 110 HOH HOH . R 5 HOH C 25 525 115 HOH HOH . R 5 HOH C 26 526 66 HOH HOH . R 5 HOH C 27 527 135 HOH HOH . R 5 HOH C 28 528 139 HOH HOH . R 5 HOH C 29 529 102 HOH HOH . R 5 HOH C 30 530 32 HOH HOH . R 5 HOH C 31 531 99 HOH HOH . R 5 HOH C 32 532 101 HOH HOH . R 5 HOH C 33 533 84 HOH HOH . S 5 HOH D 1 501 41 HOH HOH . S 5 HOH D 2 502 39 HOH HOH . S 5 HOH D 3 503 12 HOH HOH . S 5 HOH D 4 504 59 HOH HOH . S 5 HOH D 5 505 107 HOH HOH . S 5 HOH D 6 506 40 HOH HOH . S 5 HOH D 7 507 136 HOH HOH . S 5 HOH D 8 508 95 HOH HOH . S 5 HOH D 9 509 53 HOH HOH . S 5 HOH D 10 510 16 HOH HOH . S 5 HOH D 11 511 8 HOH HOH . S 5 HOH D 12 512 37 HOH HOH . S 5 HOH D 13 513 24 HOH HOH . S 5 HOH D 14 514 51 HOH HOH . S 5 HOH D 15 515 122 HOH HOH . S 5 HOH D 16 516 81 HOH HOH . S 5 HOH D 17 517 103 HOH HOH . S 5 HOH D 18 518 55 HOH HOH . S 5 HOH D 19 519 56 HOH HOH . S 5 HOH D 20 520 74 HOH HOH . S 5 HOH D 21 521 62 HOH HOH . S 5 HOH D 22 522 114 HOH HOH . S 5 HOH D 23 523 96 HOH HOH . S 5 HOH D 24 524 133 HOH HOH . S 5 HOH D 25 525 58 HOH HOH . S 5 HOH D 26 526 113 HOH HOH . S 5 HOH D 27 527 111 HOH HOH . S 5 HOH D 28 528 138 HOH HOH . S 5 HOH D 29 529 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . K 4 5.544 8.347 9.129 1 36.48 ? S SO4 404 B 1 HETATM 2 O O1 SO4 . . . K 4 4.874 9.667 9.045 1 31.21 ? O1 SO4 404 B 1 HETATM 3 O O2 SO4 . . . K 4 5.854 7.821 7.781 1 34.48 ? O2 SO4 404 B 1 HETATM 4 O O3 SO4 . . . K 4 4.662 7.359 9.788 1 36.79 ? O3 SO4 404 B 1 HETATM 5 O O4 SO4 . . . K 4 6.822 8.494 9.873 1 36.36 ? O4 SO4 404 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #