data_4YM9 # _model_server_result.job_id lZVySR_HeAAwDCLyTOG-Ww _model_server_result.datetime_utc '2024-11-14 20:50:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ym9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 4YM9 # _exptl.entry_id 4YM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YM9 _cell.length_a 51.026 _cell.length_b 58.34 _cell.length_c 74.923 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 42 1_555 A SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 158 A CYS 167 1_555 A SG CYS 174 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 214 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A OG SER 188 A SER 195 1_555 B C16 4E4 . A 4E4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? metalc ? metalc1 A OE1 GLU 59 A GLU 70 1_555 M NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A O ASN 61 A ASN 72 1_555 M NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc3 A O GLN 64 A GLN 75 1_555 M NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 A OE2 GLU 69 A GLU 80 1_555 M NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc5 M NA NA . A NA 1012 1_555 O O HOH . A HOH 1233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc6 M NA NA . A NA 1012 1_555 O O HOH . A HOH 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 346 n n S O2 SO4 doub 347 n n S O3 SO4 sing 348 n n S O4 SO4 sing 349 n n # _atom_sites.entry_id 4YM9 _atom_sites.fract_transf_matrix[1][1] 0.019598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4E4 A 1 1001 1001 4E4 TT1 . C 3 SO4 A 1 1002 2001 SO4 SO4 . D 3 SO4 A 1 1003 2002 SO4 SO4 . E 3 SO4 A 1 1004 2003 SO4 SO4 . F 3 SO4 A 1 1005 2004 SO4 SO4 . G 3 SO4 A 1 1006 2005 SO4 SO4 . H 4 ACT A 1 1007 3001 ACT ACT . I 4 ACT A 1 1008 3002 ACT ACT . J 4 ACT A 1 1009 3003 ACT ACT . K 4 ACT A 1 1010 3004 ACT ACT . L 4 ACT A 1 1011 3005 ACT ACT . M 5 NA A 1 1012 5001 NA NA . N 6 GOL A 1 1013 6001 GOL GOL . O 7 HOH A 1 1101 94 HOH HOH . O 7 HOH A 2 1102 139 HOH HOH . O 7 HOH A 3 1103 124 HOH HOH . O 7 HOH A 4 1104 115 HOH HOH . O 7 HOH A 5 1105 149 HOH HOH . O 7 HOH A 6 1106 45 HOH HOH . O 7 HOH A 7 1107 48 HOH HOH . O 7 HOH A 8 1108 130 HOH HOH . O 7 HOH A 9 1109 82 HOH HOH . O 7 HOH A 10 1110 127 HOH HOH . O 7 HOH A 11 1111 90 HOH HOH . O 7 HOH A 12 1112 95 HOH HOH . O 7 HOH A 13 1113 30 HOH HOH . O 7 HOH A 14 1114 143 HOH HOH . O 7 HOH A 15 1115 125 HOH HOH . O 7 HOH A 16 1116 111 HOH HOH . O 7 HOH A 17 1117 96 HOH HOH . O 7 HOH A 18 1118 64 HOH HOH . O 7 HOH A 19 1119 44 HOH HOH . O 7 HOH A 20 1120 59 HOH HOH . O 7 HOH A 21 1121 85 HOH HOH . O 7 HOH A 22 1122 51 HOH HOH . O 7 HOH A 23 1123 36 HOH HOH . O 7 HOH A 24 1124 40 HOH HOH . O 7 HOH A 25 1125 147 HOH HOH . O 7 HOH A 26 1126 140 HOH HOH . O 7 HOH A 27 1127 116 HOH HOH . O 7 HOH A 28 1128 146 HOH HOH . O 7 HOH A 29 1129 71 HOH HOH . O 7 HOH A 30 1130 87 HOH HOH . O 7 HOH A 31 1131 33 HOH HOH . O 7 HOH A 32 1132 70 HOH HOH . O 7 HOH A 33 1133 55 HOH HOH . O 7 HOH A 34 1134 120 HOH HOH . O 7 HOH A 35 1135 157 HOH HOH . O 7 HOH A 36 1136 128 HOH HOH . O 7 HOH A 37 1137 100 HOH HOH . O 7 HOH A 38 1138 68 HOH HOH . O 7 HOH A 39 1139 38 HOH HOH . O 7 HOH A 40 1140 76 HOH HOH . O 7 HOH A 41 1141 66 HOH HOH . O 7 HOH A 42 1142 107 HOH HOH . O 7 HOH A 43 1143 74 HOH HOH . O 7 HOH A 44 1144 79 HOH HOH . O 7 HOH A 45 1145 159 HOH HOH . O 7 HOH A 46 1146 24 HOH HOH . O 7 HOH A 47 1147 99 HOH HOH . O 7 HOH A 48 1148 77 HOH HOH . O 7 HOH A 49 1149 73 HOH HOH . O 7 HOH A 50 1150 119 HOH HOH . O 7 HOH A 51 1151 22 HOH HOH . O 7 HOH A 52 1152 50 HOH HOH . O 7 HOH A 53 1153 62 HOH HOH . O 7 HOH A 54 1154 161 HOH HOH . O 7 HOH A 55 1155 112 HOH HOH . O 7 HOH A 56 1156 110 HOH HOH . O 7 HOH A 57 1157 126 HOH HOH . O 7 HOH A 58 1158 162 HOH HOH . O 7 HOH A 59 1159 133 HOH HOH . O 7 HOH A 60 1160 150 HOH HOH . O 7 HOH A 61 1161 132 HOH HOH . O 7 HOH A 62 1162 169 HOH HOH . O 7 HOH A 63 1163 106 HOH HOH . O 7 HOH A 64 1164 1 HOH HOH . O 7 HOH A 65 1165 2 HOH HOH . O 7 HOH A 66 1166 3 HOH HOH . O 7 HOH A 67 1167 4 HOH HOH . O 7 HOH A 68 1168 5 HOH HOH . O 7 HOH A 69 1169 6 HOH HOH . O 7 HOH A 70 1170 7 HOH HOH . O 7 HOH A 71 1171 8 HOH HOH . O 7 HOH A 72 1172 9 HOH HOH . O 7 HOH A 73 1173 10 HOH HOH . O 7 HOH A 74 1174 11 HOH HOH . O 7 HOH A 75 1175 12 HOH HOH . O 7 HOH A 76 1176 13 HOH HOH . O 7 HOH A 77 1177 14 HOH HOH . O 7 HOH A 78 1178 15 HOH HOH . O 7 HOH A 79 1179 16 HOH HOH . O 7 HOH A 80 1180 17 HOH HOH . O 7 HOH A 81 1181 18 HOH HOH . O 7 HOH A 82 1182 19 HOH HOH . O 7 HOH A 83 1183 20 HOH HOH . O 7 HOH A 84 1184 21 HOH HOH . O 7 HOH A 85 1185 23 HOH HOH . O 7 HOH A 86 1186 25 HOH HOH . O 7 HOH A 87 1187 26 HOH HOH . O 7 HOH A 88 1188 27 HOH HOH . O 7 HOH A 89 1189 28 HOH HOH . O 7 HOH A 90 1190 29 HOH HOH . O 7 HOH A 91 1191 31 HOH HOH . O 7 HOH A 92 1192 32 HOH HOH . O 7 HOH A 93 1193 34 HOH HOH . O 7 HOH A 94 1194 35 HOH HOH . O 7 HOH A 95 1195 37 HOH HOH . O 7 HOH A 96 1196 39 HOH HOH . O 7 HOH A 97 1197 41 HOH HOH . O 7 HOH A 98 1198 42 HOH HOH . O 7 HOH A 99 1199 43 HOH HOH . O 7 HOH A 100 1200 46 HOH HOH . O 7 HOH A 101 1201 47 HOH HOH . O 7 HOH A 102 1202 49 HOH HOH . O 7 HOH A 103 1203 52 HOH HOH . O 7 HOH A 104 1204 53 HOH HOH . O 7 HOH A 105 1205 54 HOH HOH . O 7 HOH A 106 1206 56 HOH HOH . O 7 HOH A 107 1207 57 HOH HOH . O 7 HOH A 108 1208 58 HOH HOH . O 7 HOH A 109 1209 60 HOH HOH . O 7 HOH A 110 1210 61 HOH HOH . O 7 HOH A 111 1211 65 HOH HOH . O 7 HOH A 112 1212 67 HOH HOH . O 7 HOH A 113 1213 69 HOH HOH . O 7 HOH A 114 1214 72 HOH HOH . O 7 HOH A 115 1215 75 HOH HOH . O 7 HOH A 116 1216 78 HOH HOH . O 7 HOH A 117 1217 80 HOH HOH . O 7 HOH A 118 1218 83 HOH HOH . O 7 HOH A 119 1219 84 HOH HOH . O 7 HOH A 120 1220 86 HOH HOH . O 7 HOH A 121 1221 88 HOH HOH . O 7 HOH A 122 1222 89 HOH HOH . O 7 HOH A 123 1223 91 HOH HOH . O 7 HOH A 124 1224 92 HOH HOH . O 7 HOH A 125 1225 93 HOH HOH . O 7 HOH A 126 1226 97 HOH HOH . O 7 HOH A 127 1227 98 HOH HOH . O 7 HOH A 128 1228 101 HOH HOH . O 7 HOH A 129 1229 102 HOH HOH . O 7 HOH A 130 1230 103 HOH HOH . O 7 HOH A 131 1231 104 HOH HOH . O 7 HOH A 132 1232 105 HOH HOH . O 7 HOH A 133 1233 109 HOH HOH . O 7 HOH A 134 1234 113 HOH HOH . O 7 HOH A 135 1235 114 HOH HOH . O 7 HOH A 136 1236 117 HOH HOH . O 7 HOH A 137 1237 118 HOH HOH . O 7 HOH A 138 1238 122 HOH HOH . O 7 HOH A 139 1239 123 HOH HOH . O 7 HOH A 140 1240 129 HOH HOH . O 7 HOH A 141 1241 131 HOH HOH . O 7 HOH A 142 1242 135 HOH HOH . O 7 HOH A 143 1243 136 HOH HOH . O 7 HOH A 144 1244 137 HOH HOH . O 7 HOH A 145 1245 138 HOH HOH . O 7 HOH A 146 1246 141 HOH HOH . O 7 HOH A 147 1247 142 HOH HOH . O 7 HOH A 148 1248 145 HOH HOH . O 7 HOH A 149 1249 148 HOH HOH . O 7 HOH A 150 1250 151 HOH HOH . O 7 HOH A 151 1251 152 HOH HOH . O 7 HOH A 152 1252 156 HOH HOH . O 7 HOH A 153 1253 158 HOH HOH . O 7 HOH A 154 1254 163 HOH HOH . O 7 HOH A 155 1255 164 HOH HOH . O 7 HOH A 156 1256 165 HOH HOH . O 7 HOH A 157 1257 167 HOH HOH . O 7 HOH A 158 1258 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 2.158 8.523 23.566 0.63 33.47 ? S SO4 1003 A 1 HETATM 2 O O1 SO4 . . . D 3 3.522 7.981 23.714 0.63 25.86 ? O1 SO4 1003 A 1 HETATM 3 O O2 SO4 . . . D 3 1.697 8.259 22.217 0.63 22.7 ? O2 SO4 1003 A 1 HETATM 4 O O3 SO4 . . . D 3 1.229 7.932 24.523 0.63 51.03 ? O3 SO4 1003 A 1 HETATM 5 O O4 SO4 . . . D 3 2.189 9.965 23.812 0.63 46.72 ? O4 SO4 1003 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 503 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #