data_4YML # _model_server_result.job_id clk0EUP133C0mlSRuLeQSQ _model_server_result.datetime_utc '2025-03-04 18:06:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4YML # _exptl.entry_id 4YML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YML _cell.length_a 71.95 _cell.length_b 91.95 _cell.length_c 69.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YML _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -71.95 0 -34.79 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 301 n n P O2 PO4 sing 302 n n P O3 PO4 sing 303 n n P O4 PO4 sing 304 n n # _atom_sites.entry_id 4YML _atom_sites.fract_transf_matrix[1][1] 0.013899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4F0 A 1 301 1 4F0 eMT . C 3 PO4 A 1 302 1 PO4 PO4 . D 4 HOH A 1 401 77 HOH HOH . D 4 HOH A 2 402 76 HOH HOH . D 4 HOH A 3 403 23 HOH HOH . D 4 HOH A 4 404 7 HOH HOH . D 4 HOH A 5 405 34 HOH HOH . D 4 HOH A 6 406 62 HOH HOH . D 4 HOH A 7 407 46 HOH HOH . D 4 HOH A 8 408 72 HOH HOH . D 4 HOH A 9 409 1 HOH HOH . D 4 HOH A 10 410 60 HOH HOH . D 4 HOH A 11 411 18 HOH HOH . D 4 HOH A 12 412 22 HOH HOH . D 4 HOH A 13 413 36 HOH HOH . D 4 HOH A 14 414 84 HOH HOH . D 4 HOH A 15 415 21 HOH HOH . D 4 HOH A 16 416 33 HOH HOH . D 4 HOH A 17 417 29 HOH HOH . D 4 HOH A 18 418 93 HOH HOH . D 4 HOH A 19 419 17 HOH HOH . D 4 HOH A 20 420 100 HOH HOH . D 4 HOH A 21 421 89 HOH HOH . D 4 HOH A 22 422 2 HOH HOH . D 4 HOH A 23 423 31 HOH HOH . D 4 HOH A 24 424 122 HOH HOH . D 4 HOH A 25 425 27 HOH HOH . D 4 HOH A 26 426 86 HOH HOH . D 4 HOH A 27 427 52 HOH HOH . D 4 HOH A 28 428 53 HOH HOH . D 4 HOH A 29 429 15 HOH HOH . D 4 HOH A 30 430 70 HOH HOH . D 4 HOH A 31 431 95 HOH HOH . D 4 HOH A 32 432 99 HOH HOH . D 4 HOH A 33 433 117 HOH HOH . D 4 HOH A 34 434 16 HOH HOH . D 4 HOH A 35 435 116 HOH HOH . D 4 HOH A 36 436 51 HOH HOH . D 4 HOH A 37 437 25 HOH HOH . D 4 HOH A 38 438 90 HOH HOH . D 4 HOH A 39 439 128 HOH HOH . D 4 HOH A 40 440 79 HOH HOH . D 4 HOH A 41 441 71 HOH HOH . D 4 HOH A 42 442 119 HOH HOH . D 4 HOH A 43 443 66 HOH HOH . D 4 HOH A 44 444 87 HOH HOH . D 4 HOH A 45 445 24 HOH HOH . D 4 HOH A 46 446 68 HOH HOH . D 4 HOH A 47 447 94 HOH HOH . D 4 HOH A 48 448 57 HOH HOH . D 4 HOH A 49 449 3 HOH HOH . D 4 HOH A 50 450 4 HOH HOH . D 4 HOH A 51 451 5 HOH HOH . D 4 HOH A 52 452 6 HOH HOH . D 4 HOH A 53 453 8 HOH HOH . D 4 HOH A 54 454 9 HOH HOH . D 4 HOH A 55 455 10 HOH HOH . D 4 HOH A 56 456 11 HOH HOH . D 4 HOH A 57 457 12 HOH HOH . D 4 HOH A 58 458 13 HOH HOH . D 4 HOH A 59 459 14 HOH HOH . D 4 HOH A 60 460 19 HOH HOH . D 4 HOH A 61 461 20 HOH HOH . D 4 HOH A 62 462 26 HOH HOH . D 4 HOH A 63 463 28 HOH HOH . D 4 HOH A 64 464 30 HOH HOH . D 4 HOH A 65 465 32 HOH HOH . D 4 HOH A 66 466 35 HOH HOH . D 4 HOH A 67 467 37 HOH HOH . D 4 HOH A 68 468 38 HOH HOH . D 4 HOH A 69 469 39 HOH HOH . D 4 HOH A 70 470 40 HOH HOH . D 4 HOH A 71 471 41 HOH HOH . D 4 HOH A 72 472 42 HOH HOH . D 4 HOH A 73 473 43 HOH HOH . D 4 HOH A 74 474 44 HOH HOH . D 4 HOH A 75 475 45 HOH HOH . D 4 HOH A 76 476 47 HOH HOH . D 4 HOH A 77 477 48 HOH HOH . D 4 HOH A 78 478 49 HOH HOH . D 4 HOH A 79 479 50 HOH HOH . D 4 HOH A 80 480 54 HOH HOH . D 4 HOH A 81 481 55 HOH HOH . D 4 HOH A 82 482 56 HOH HOH . D 4 HOH A 83 483 58 HOH HOH . D 4 HOH A 84 484 59 HOH HOH . D 4 HOH A 85 485 61 HOH HOH . D 4 HOH A 86 486 63 HOH HOH . D 4 HOH A 87 487 64 HOH HOH . D 4 HOH A 88 488 65 HOH HOH . D 4 HOH A 89 489 67 HOH HOH . D 4 HOH A 90 490 69 HOH HOH . D 4 HOH A 91 491 73 HOH HOH . D 4 HOH A 92 492 74 HOH HOH . D 4 HOH A 93 493 75 HOH HOH . D 4 HOH A 94 494 78 HOH HOH . D 4 HOH A 95 495 80 HOH HOH . D 4 HOH A 96 496 81 HOH HOH . D 4 HOH A 97 497 82 HOH HOH . D 4 HOH A 98 498 83 HOH HOH . D 4 HOH A 99 499 85 HOH HOH . D 4 HOH A 100 500 88 HOH HOH . D 4 HOH A 101 501 91 HOH HOH . D 4 HOH A 102 502 92 HOH HOH . D 4 HOH A 103 503 96 HOH HOH . D 4 HOH A 104 504 97 HOH HOH . D 4 HOH A 105 505 98 HOH HOH . D 4 HOH A 106 506 101 HOH HOH . D 4 HOH A 107 507 102 HOH HOH . D 4 HOH A 108 508 103 HOH HOH . D 4 HOH A 109 509 104 HOH HOH . D 4 HOH A 110 510 105 HOH HOH . D 4 HOH A 111 511 106 HOH HOH . D 4 HOH A 112 512 107 HOH HOH . D 4 HOH A 113 513 108 HOH HOH . D 4 HOH A 114 514 109 HOH HOH . D 4 HOH A 115 515 110 HOH HOH . D 4 HOH A 116 516 111 HOH HOH . D 4 HOH A 117 517 112 HOH HOH . D 4 HOH A 118 518 113 HOH HOH . D 4 HOH A 119 519 114 HOH HOH . D 4 HOH A 120 520 115 HOH HOH . D 4 HOH A 121 521 118 HOH HOH . D 4 HOH A 122 522 120 HOH HOH . D 4 HOH A 123 523 121 HOH HOH . D 4 HOH A 124 524 123 HOH HOH . D 4 HOH A 125 525 124 HOH HOH . D 4 HOH A 126 526 125 HOH HOH . D 4 HOH A 127 527 126 HOH HOH . D 4 HOH A 128 528 127 HOH HOH . D 4 HOH A 129 529 129 HOH HOH . D 4 HOH A 130 530 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 -13.957 -29.857 -12.255 1 28.03 ? P PO4 302 A 1 HETATM 2 O O1 PO4 . . . C 3 -13.736 -30.613 -13.54 1 31.99 ? O1 PO4 302 A 1 HETATM 3 O O2 PO4 . . . C 3 -14.528 -28.505 -12.622 1 31.23 ? O2 PO4 302 A 1 HETATM 4 O O3 PO4 . . . C 3 -12.639 -29.643 -11.551 1 27.22 ? O3 PO4 302 A 1 HETATM 5 O O4 PO4 . . . C 3 -14.989 -30.577 -11.457 1 29.57 ? O4 PO4 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 511 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #