data_4YMQ # _model_server_result.job_id jW3CkiNQ9lu2ODukL9gmSw _model_server_result.datetime_utc '2024-11-26 01:44:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ymq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4YMQ # _exptl.entry_id 4YMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 597.57 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{3-[4-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)benzyl]-2,2-dioxido-2,1,3-benzothiadiazol-1(3H)-yl}-N-[(2R)-4-hydroxybutan-2-yl]-N-methylbutanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YMQ _cell.length_a 61.909 _cell.length_b 61.909 _cell.length_c 156.965 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O CYS 123 A CYS 366 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc2 A O TYR 126 A TYR 369 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc3 A OG SER 165 A SER 408 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc4 B NA NA . A NA 601 1_555 E O HOH . A HOH 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc5 B NA NA . A NA 601 1_555 E O HOH . A HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc6 B NA NA . A NA 601 1_555 E O HOH . A HOH 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? # _chem_comp.formula 'C25 H29 F6 N3 O5 S' _chem_comp.formula_weight 597.57 _chem_comp.id ZBD _chem_comp.mon_nstd_flag . _chem_comp.name 4-{3-[4-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)benzyl]-2,2-dioxido-2,1,3-benzothiadiazol-1(3H)-yl}-N-[(2R)-4-hydroxybutan-2-yl]-N-methylbutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 S5 ZBD doub 389 n n O3 C2 ZBD doub 390 n n O17 C14 ZBD sing 391 n n F19 C16 ZBD sing 392 n n C34 C2 ZBD sing 393 n n C34 C33 ZBD sing 394 n n C12 C13 ZBD doub 395 n y C12 C11 ZBD sing 396 n y O30 S5 ZBD doub 397 n n C2 N4 ZBD sing 398 n n C13 C8 ZBD sing 399 n y S5 N6 ZBD sing 400 n n S5 N1 ZBD sing 401 n n F18 C16 ZBD sing 402 n n C33 C32 ZBD sing 403 n n C16 C14 ZBD sing 404 n n C16 F20 ZBD sing 405 n n C32 N6 ZBD sing 406 n n N4 C37 ZBD sing 407 n n N4 C39 ZBD sing 408 n n C14 C11 ZBD sing 409 n n C14 C15 ZBD sing 410 n n C35 C37 ZBD sing 411 n n C35 C38 ZBD sing 412 n n C11 C10 ZBD doub 413 n y C37 C40 ZBD sing 414 n n N6 C25 ZBD sing 415 n n C8 C7 ZBD sing 416 n n C8 C9 ZBD doub 417 n y C7 N1 ZBD sing 418 n n F22 C15 ZBD sing 419 n n N1 C24 ZBD sing 420 n n C15 F23 ZBD sing 421 n n C15 F21 ZBD sing 422 n n C10 C9 ZBD sing 423 n y C38 O36 ZBD sing 424 n n C25 C24 ZBD doub 425 n y C25 C26 ZBD sing 426 n y C24 C29 ZBD sing 427 n y C26 C27 ZBD doub 428 n y C29 C28 ZBD doub 429 n y C27 C28 ZBD sing 430 n y C7 H1 ZBD sing 431 n n C7 H2 ZBD sing 432 n n C10 H3 ZBD sing 433 n n C13 H4 ZBD sing 434 n n C26 H5 ZBD sing 435 n n C28 H6 ZBD sing 436 n n C32 H7 ZBD sing 437 n n C32 H8 ZBD sing 438 n n C33 H9 ZBD sing 439 n n C33 H10 ZBD sing 440 n n C34 H11 ZBD sing 441 n n C34 H12 ZBD sing 442 n n C39 H13 ZBD sing 443 n n C39 H14 ZBD sing 444 n n C39 H15 ZBD sing 445 n n C37 H16 ZBD sing 446 n n C40 H17 ZBD sing 447 n n C40 H18 ZBD sing 448 n n C40 H19 ZBD sing 449 n n C35 H20 ZBD sing 450 n n C35 H21 ZBD sing 451 n n C38 H22 ZBD sing 452 n n C38 H23 ZBD sing 453 n n O36 H24 ZBD sing 454 n n C27 H25 ZBD sing 455 n n C29 H26 ZBD sing 456 n n C12 H27 ZBD sing 457 n n C9 H28 ZBD sing 458 n n O17 H29 ZBD sing 459 n n # _atom_sites.entry_id 4YMQ _atom_sites.fract_transf_matrix[1][1] 0.016153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 1 NA NA . C 3 GOL A 1 602 1 GOL GOL . D 4 ZBD A 1 603 990 ZBD LIG . E 5 HOH A 1 701 109 HOH HOH . E 5 HOH A 2 702 73 HOH HOH . E 5 HOH A 3 703 80 HOH HOH . E 5 HOH A 4 704 98 HOH HOH . E 5 HOH A 5 705 11 HOH HOH . E 5 HOH A 6 706 84 HOH HOH . E 5 HOH A 7 707 83 HOH HOH . E 5 HOH A 8 708 72 HOH HOH . E 5 HOH A 9 709 103 HOH HOH . E 5 HOH A 10 710 45 HOH HOH . E 5 HOH A 11 711 44 HOH HOH . E 5 HOH A 12 712 6 HOH HOH . E 5 HOH A 13 713 5 HOH HOH . E 5 HOH A 14 714 49 HOH HOH . E 5 HOH A 15 715 51 HOH HOH . E 5 HOH A 16 716 25 HOH HOH . E 5 HOH A 17 717 18 HOH HOH . E 5 HOH A 18 718 61 HOH HOH . E 5 HOH A 19 719 35 HOH HOH . E 5 HOH A 20 720 67 HOH HOH . E 5 HOH A 21 721 10 HOH HOH . E 5 HOH A 22 722 14 HOH HOH . E 5 HOH A 23 723 65 HOH HOH . E 5 HOH A 24 724 27 HOH HOH . E 5 HOH A 25 725 122 HOH HOH . E 5 HOH A 26 726 34 HOH HOH . E 5 HOH A 27 727 19 HOH HOH . E 5 HOH A 28 728 56 HOH HOH . E 5 HOH A 29 729 53 HOH HOH . E 5 HOH A 30 730 89 HOH HOH . E 5 HOH A 31 731 123 HOH HOH . E 5 HOH A 32 732 48 HOH HOH . E 5 HOH A 33 733 38 HOH HOH . E 5 HOH A 34 734 76 HOH HOH . E 5 HOH A 35 735 28 HOH HOH . E 5 HOH A 36 736 1 HOH HOH . E 5 HOH A 37 737 2 HOH HOH . E 5 HOH A 38 738 3 HOH HOH . E 5 HOH A 39 739 4 HOH HOH . E 5 HOH A 40 740 7 HOH HOH . E 5 HOH A 41 741 8 HOH HOH . E 5 HOH A 42 742 9 HOH HOH . E 5 HOH A 43 743 12 HOH HOH . E 5 HOH A 44 744 13 HOH HOH . E 5 HOH A 45 745 15 HOH HOH . E 5 HOH A 46 746 16 HOH HOH . E 5 HOH A 47 747 17 HOH HOH . E 5 HOH A 48 748 20 HOH HOH . E 5 HOH A 49 749 21 HOH HOH . E 5 HOH A 50 750 22 HOH HOH . E 5 HOH A 51 751 23 HOH HOH . E 5 HOH A 52 752 24 HOH HOH . E 5 HOH A 53 753 26 HOH HOH . E 5 HOH A 54 754 29 HOH HOH . E 5 HOH A 55 755 30 HOH HOH . E 5 HOH A 56 756 31 HOH HOH . E 5 HOH A 57 757 32 HOH HOH . E 5 HOH A 58 758 33 HOH HOH . E 5 HOH A 59 759 36 HOH HOH . E 5 HOH A 60 760 37 HOH HOH . E 5 HOH A 61 761 39 HOH HOH . E 5 HOH A 62 762 40 HOH HOH . E 5 HOH A 63 763 41 HOH HOH . E 5 HOH A 64 764 42 HOH HOH . E 5 HOH A 65 765 43 HOH HOH . E 5 HOH A 66 766 46 HOH HOH . E 5 HOH A 67 767 47 HOH HOH . E 5 HOH A 68 768 50 HOH HOH . E 5 HOH A 69 769 52 HOH HOH . E 5 HOH A 70 770 54 HOH HOH . E 5 HOH A 71 771 57 HOH HOH . E 5 HOH A 72 772 58 HOH HOH . E 5 HOH A 73 773 59 HOH HOH . E 5 HOH A 74 774 60 HOH HOH . E 5 HOH A 75 775 62 HOH HOH . E 5 HOH A 76 776 63 HOH HOH . E 5 HOH A 77 777 64 HOH HOH . E 5 HOH A 78 778 66 HOH HOH . E 5 HOH A 79 779 69 HOH HOH . E 5 HOH A 80 780 70 HOH HOH . E 5 HOH A 81 781 71 HOH HOH . E 5 HOH A 82 782 74 HOH HOH . E 5 HOH A 83 783 75 HOH HOH . E 5 HOH A 84 784 77 HOH HOH . E 5 HOH A 85 785 78 HOH HOH . E 5 HOH A 86 786 79 HOH HOH . E 5 HOH A 87 787 81 HOH HOH . E 5 HOH A 88 788 82 HOH HOH . E 5 HOH A 89 789 85 HOH HOH . E 5 HOH A 90 790 86 HOH HOH . E 5 HOH A 91 791 87 HOH HOH . E 5 HOH A 92 792 88 HOH HOH . E 5 HOH A 93 793 92 HOH HOH . E 5 HOH A 94 794 93 HOH HOH . E 5 HOH A 95 795 95 HOH HOH . E 5 HOH A 96 796 96 HOH HOH . E 5 HOH A 97 797 97 HOH HOH . E 5 HOH A 98 798 99 HOH HOH . E 5 HOH A 99 799 100 HOH HOH . E 5 HOH A 100 800 102 HOH HOH . E 5 HOH A 101 801 107 HOH HOH . E 5 HOH A 102 802 108 HOH HOH . E 5 HOH A 103 803 110 HOH HOH . E 5 HOH A 104 804 111 HOH HOH . E 5 HOH A 105 805 112 HOH HOH . E 5 HOH A 106 806 113 HOH HOH . E 5 HOH A 107 807 115 HOH HOH . E 5 HOH A 108 808 118 HOH HOH . E 5 HOH A 109 809 119 HOH HOH . E 5 HOH A 110 810 120 HOH HOH . E 5 HOH A 111 811 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ZBD . . . D 4 -6.751 28.872 15.942 1 65.37 ? N1 ZBD 603 A 1 HETATM 2 C C7 ZBD . . . D 4 -8.21 28.997 15.852 1 69.55 ? C7 ZBD 603 A 1 HETATM 3 C C8 ZBD . . . D 4 -8.848 27.643 15.684 1 64.6 ? C8 ZBD 603 A 1 HETATM 4 C C10 ZBD . . . D 4 -9.806 25.661 16.618 1 63.8 ? C10 ZBD 603 A 1 HETATM 5 C C13 ZBD . . . D 4 -9.069 27.147 14.414 1 64.84 ? C13 ZBD 603 A 1 HETATM 6 C C15 ZBD . . . D 4 -10.288 22.817 16.269 1 66.72 ? C15 ZBD 603 A 1 HETATM 7 C C24 ZBD . . . D 4 -5.964 29.006 17.104 1 56.17 ? C24 ZBD 603 A 1 HETATM 8 C C26 ZBD . . . D 4 -3.737 28.91 18.006 1 58.93 ? C26 ZBD 603 A 1 HETATM 9 C C28 ZBD . . . D 4 -5.575 29.374 19.462 1 49.5 ? C28 ZBD 603 A 1 HETATM 10 O O31 ZBD . . . D 4 -5.628 29.644 13.833 1 77.92 ? O31 ZBD 603 A 1 HETATM 11 S S5 ZBD . . . D 4 -5.666 28.532 14.72 1 71.19 ? S5 ZBD 603 A 1 HETATM 12 O O30 ZBD . . . D 4 -5.899 27.192 14.292 1 69.3 ? O30 ZBD 603 A 1 HETATM 13 C C25 ZBD . . . D 4 -4.604 28.832 16.908 1 57.05 ? C25 ZBD 603 A 1 HETATM 14 N N6 ZBD . . . D 4 -4.235 28.551 15.578 1 64.39 ? N6 ZBD 603 A 1 HETATM 15 C C32 ZBD . . . D 4 -2.886 28.318 15.059 1 59.77 ? C32 ZBD 603 A 1 HETATM 16 C C33 ZBD . . . D 4 -2.765 26.83 14.723 1 60.54 ? C33 ZBD 603 A 1 HETATM 17 C C34 ZBD . . . D 4 -1.41 26.574 14.072 1 70.11 ? C34 ZBD 603 A 1 HETATM 18 C C2 ZBD . . . D 4 -0.965 25.153 14.336 1 75.65 ? C2 ZBD 603 A 1 HETATM 19 N N4 ZBD . . . D 4 0.106 24.941 15.122 1 69.44 ? N4 ZBD 603 A 1 HETATM 20 C C39 ZBD . . . D 4 0.794 26.099 15.694 1 60.58 ? C39 ZBD 603 A 1 HETATM 21 C C37 ZBD . . . D 4 0.561 23.564 15.374 1 64.75 ? C37 ZBD 603 A 1 HETATM 22 C C40 ZBD . . . D 4 -0.063 23.057 16.674 1 60.44 ? C40 ZBD 603 A 1 HETATM 23 C C35 ZBD . . . D 4 2.103 23.46 15.341 1 71.37 ? C35 ZBD 603 A 1 HETATM 24 C C38 ZBD . . . D 4 2.79 23.616 16.706 1 74.96 ? C38 ZBD 603 A 1 HETATM 25 O O36 ZBD . . . D 4 3.403 24.904 16.834 1 70.56 ? O36 ZBD 603 A 1 HETATM 26 O O3 ZBD . . . D 4 -1.555 24.208 13.846 1 75.65 ? O3 ZBD 603 A 1 HETATM 27 C C27 ZBD . . . D 4 -4.222 29.169 19.273 1 48.57 ? C27 ZBD 603 A 1 HETATM 28 C C29 ZBD . . . D 4 -6.44 29.277 18.391 1 55.48 ? C29 ZBD 603 A 1 HETATM 29 C C12 ZBD . . . D 4 -9.657 25.904 14.249 1 64.32 ? C12 ZBD 603 A 1 HETATM 30 C C11 ZBD . . . D 4 -10.037 25.155 15.35 1 62.93 ? C11 ZBD 603 A 1 HETATM 31 C C9 ZBD . . . D 4 -9.217 26.902 16.791 1 64.64 ? C9 ZBD 603 A 1 HETATM 32 C C14 ZBD . . . D 4 -10.67 23.793 15.141 1 68.75 ? C14 ZBD 603 A 1 HETATM 33 O O17 ZBD . . . D 4 -10.157 23.267 13.916 1 68.64 ? O17 ZBD 603 A 1 HETATM 34 C C16 ZBD . . . D 4 -12.205 23.905 15.039 1 74.61 ? C16 ZBD 603 A 1 HETATM 35 F F20 ZBD . . . D 4 -12.815 23.541 16.239 1 67.79 ? F20 ZBD 603 A 1 HETATM 36 F F19 ZBD . . . D 4 -12.668 23.058 14.026 1 79.42 ? F19 ZBD 603 A 1 HETATM 37 F F18 ZBD . . . D 4 -12.587 25.211 14.722 1 82.59 ? F18 ZBD 603 A 1 HETATM 38 F F21 ZBD . . . D 4 -10.952 23.125 17.461 1 63.01 ? F21 ZBD 603 A 1 HETATM 39 F F22 ZBD . . . D 4 -10.659 21.53 15.875 1 69.34 ? F22 ZBD 603 A 1 HETATM 40 F F23 ZBD . . . D 4 -8.912 22.828 16.506 1 66.25 ? F23 ZBD 603 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 40 #