data_4YMV
#
_model_server_result.job_id            k2Kb4iQ7ToFQt6aQVnT3AQ 
_model_server_result.datetime_utc      '2024-11-21 15:42:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ymv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    4YMV 
#
_exptl.entry_id    4YMV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YMV 
_cell.length_a            96.527 
_cell.length_b            115.257 
_cell.length_c            301.546 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4YMV 
_atom_sites.fract_transf_matrix[1][1]    0.01036 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ATP J 1 301 1 ATP ATP . 
F 3 ATP A 1 301 2 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . E 3 -18.544 30.813 13.213 1 153.65 ? PG ATP 301 J 1 
HETATM 2 O O1G ATP . . . E 3 -18.988 29.528 13.895 1 155.06 ? O1G ATP 301 J 1 
HETATM 3 O O2G ATP . . . E 3 -17.266 30.705 12.372 1 154.08 ? O2G ATP 301 J 1 
HETATM 4 O O3G ATP . . . E 3 -19.71 31.539 12.552 1 149.03 ? O3G ATP 301 J 1 
HETATM 5 P PB ATP . . . E 3 -17.115 32.972 14.351 1 133.15 ? PB ATP 301 J 1 
HETATM 6 O O1B ATP . . . E 3 -16.786 33.268 15.807 1 138.93 ? O1B ATP 301 J 1 
HETATM 7 O O2B ATP . . . E 3 -16.006 32.655 13.35 1 125.6 ? O2B ATP 301 J 1 
HETATM 8 O O3B ATP . . . E 3 -18.134 31.734 14.472 1 209.05 ? O3B ATP 301 J 1 
HETATM 9 P PA ATP . . . E 3 -18.743 34.534 12.411 1 101.4 ? PA ATP 301 J 1 
HETATM 10 O O1A ATP . . . E 3 -18.21 35.911 12.053 1 103.44 ? O1A ATP 301 J 1 
HETATM 11 O O2A ATP . . . E 3 -18.46 33.428 11.44 1 112.36 ? O2A ATP 301 J 1 
HETATM 12 O O3A ATP . . . E 3 -18.158 34.144 13.879 1 156.48 ? O3A ATP 301 J 1 
HETATM 13 O O5' ATP . . . E 3 -20.348 34.644 12.565 1 104.11 ? O5' ATP 301 J 1 
HETATM 14 C C5' ATP . . . E 3 -20.962 35.834 13.074 1 97.23 ? C5' ATP 301 J 1 
HETATM 15 C C4' ATP . . . E 3 -20.855 35.493 14.508 1 93.21 ? C4' ATP 301 J 1 
HETATM 16 O O4' ATP . . . E 3 -21.462 36.359 15.443 1 104.71 ? O4' ATP 301 J 1 
HETATM 17 C C3' ATP . . . E 3 -21.476 34.142 14.745 1 97.07 ? C3' ATP 301 J 1 
HETATM 18 O O3' ATP . . . E 3 -20.676 33.09 14.222 1 100.58 ? O3' ATP 301 J 1 
HETATM 19 C C2' ATP . . . E 3 -21.515 34.128 16.261 1 116.99 ? C2' ATP 301 J 1 
HETATM 20 O O2' ATP . . . E 3 -20.511 33.236 16.805 1 123.64 ? O2' ATP 301 J 1 
HETATM 21 C C1' ATP . . . E 3 -21.235 35.594 16.651 1 115.63 ? C1' ATP 301 J 1 
HETATM 22 N N9 ATP . . . E 3 -21.997 36.136 17.817 1 113.08 ? N9 ATP 301 J 1 
HETATM 23 C C8 ATP . . . E 3 -21.505 37.145 18.538 1 111.55 ? C8 ATP 301 J 1 
HETATM 24 N N7 ATP . . . E 3 -22.368 37.459 19.535 1 120 ? N7 ATP 301 J 1 
HETATM 25 C C5 ATP . . . E 3 -23.443 36.637 19.474 1 118.56 ? C5 ATP 301 J 1 
HETATM 26 C C6 ATP . . . E 3 -24.711 36.446 20.243 1 112.62 ? C6 ATP 301 J 1 
HETATM 27 N N6 ATP . . . E 3 -24.998 37.228 21.306 1 109.48 ? N6 ATP 301 J 1 
HETATM 28 N N1 ATP . . . E 3 -25.575 35.479 19.859 1 109.43 ? N1 ATP 301 J 1 
HETATM 29 C C2 ATP . . . E 3 -25.285 34.702 18.796 1 113.44 ? C2 ATP 301 J 1 
HETATM 30 N N3 ATP . . . E 3 -24.152 34.826 18.064 1 115.78 ? N3 ATP 301 J 1 
HETATM 31 C C4 ATP . . . E 3 -23.189 35.751 18.335 1 116.52 ? C4 ATP 301 J 1 
HETATM 32 H "H5'1" ATP . . . E 3 -22.001 35.929 12.752 1 100.05 ? "H5'1" ATP 301 J 1 
HETATM 33 H "H5'2" ATP . . . E 3 -20.391 36.73 12.822 1 100.05 ? "H5'2" ATP 301 J 1 
HETATM 34 H H4' ATP . . . E 3 -19.786 35.413 14.748 1 91.66 ? H4' ATP 301 J 1 
HETATM 35 H H3' ATP . . . E 3 -22.497 34.116 14.338 1 99.89 ? H3' ATP 301 J 1 
HETATM 36 H HO3' ATP . . . E 3 -21.107 32.242 14.393 1 107.73 ? HO3' ATP 301 J 1 
HETATM 37 H H2' ATP . . . E 3 -22.52 33.841 16.602 1 142.51 ? H2' ATP 301 J 1 
HETATM 38 H HO2' ATP . . . E 3 -20.684 32.334 16.503 1 157.13 ? HO2' ATP 301 J 1 
HETATM 39 H H1' ATP . . . E 3 -20.165 35.657 16.894 1 139.61 ? H1' ATP 301 J 1 
HETATM 40 H H8 ATP . . . E 3 -20.562 37.644 18.35 1 131 ? H8 ATP 301 J 1 
HETATM 41 H HN61 ATP . . . E 3 -25.858 37.09 21.817 1 126.42 ? HN61 ATP 301 J 1 
HETATM 42 H HN62 ATP . . . E 3 -24.352 37.95 21.591 1 126.42 ? HN62 ATP 301 J 1 
HETATM 43 H H2 ATP . . . E 3 -25.995 33.934 18.514 1 134.68 ? H2 ATP 301 J 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#