data_4YN0 # _model_server_result.job_id OD145RQAyPG25SN6loyerg _model_server_result.datetime_utc '2024-12-06 13:00:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yn0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4YN0 # _exptl.entry_id 4YN0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YN0 _cell.length_a 67.32 _cell.length_b 67.32 _cell.length_c 226.229 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YN0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 67 1_555 A SG CYS 41 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 A SG CYS 31 A CYS 70 1_555 A SG CYS 49 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 52 A CYS 91 1_555 A SG CYS 67 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf4 A SG CYS 70 A CYS 109 1_555 A SG CYS 84 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 74 A CYS 113 1_555 A SG CYS 92 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 94 A CYS 133 1_555 A SG CYS 105 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf7 A SG CYS 111 A CYS 150 1_555 A SG CYS 129 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 132 A CYS 171 1_555 A SG CYS 147 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf9 A SG CYS 153 A CYS 192 1_555 A SG CYS 172 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 A ND2 ASN 43 A ASN 82 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 B ND2 ASN 175 B ASN 467 1_555 E C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? metalc ? metalc1 A O CYS 111 A CYS 150 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc2 A O PRO 112 A PRO 151 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc3 A O TRP 115 A TRP 154 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc4 A OG SER 138 A SER 177 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 A O VAL 140 A VAL 179 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc6 D MG MG . A MG 302 1_555 F O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4YN0 _atom_sites.fract_transf_matrix[1][1] 0.014854 _atom_sites.fract_transf_matrix[1][2] 0.008576 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 301 821 NAG NAG . D 4 MG A 1 302 1 MG MG . E 3 NAG B 1 601 4671 NAG NAG . F 5 HOH A 1 401 8 HOH HOH . F 5 HOH A 2 402 26 HOH HOH . F 5 HOH A 3 403 28 HOH HOH . F 5 HOH A 4 404 54 HOH HOH . F 5 HOH A 5 405 50 HOH HOH . F 5 HOH A 6 406 5 HOH HOH . F 5 HOH A 7 407 53 HOH HOH . F 5 HOH A 8 408 81 HOH HOH . F 5 HOH A 9 409 32 HOH HOH . F 5 HOH A 10 410 23 HOH HOH . F 5 HOH A 11 411 65 HOH HOH . F 5 HOH A 12 412 70 HOH HOH . F 5 HOH A 13 413 84 HOH HOH . F 5 HOH A 14 414 93 HOH HOH . F 5 HOH A 15 415 1 HOH HOH . F 5 HOH A 16 416 2 HOH HOH . F 5 HOH A 17 417 3 HOH HOH . F 5 HOH A 18 418 4 HOH HOH . F 5 HOH A 19 419 7 HOH HOH . F 5 HOH A 20 420 9 HOH HOH . F 5 HOH A 21 421 10 HOH HOH . F 5 HOH A 22 422 18 HOH HOH . F 5 HOH A 23 423 19 HOH HOH . F 5 HOH A 24 424 20 HOH HOH . F 5 HOH A 25 425 21 HOH HOH . F 5 HOH A 26 426 22 HOH HOH . F 5 HOH A 27 427 34 HOH HOH . F 5 HOH A 28 428 36 HOH HOH . F 5 HOH A 29 429 38 HOH HOH . F 5 HOH A 30 430 40 HOH HOH . F 5 HOH A 31 431 43 HOH HOH . F 5 HOH A 32 432 48 HOH HOH . F 5 HOH A 33 433 51 HOH HOH . F 5 HOH A 34 434 56 HOH HOH . F 5 HOH A 35 435 57 HOH HOH . F 5 HOH A 36 436 58 HOH HOH . F 5 HOH A 37 437 59 HOH HOH . F 5 HOH A 38 438 60 HOH HOH . F 5 HOH A 39 439 61 HOH HOH . F 5 HOH A 40 440 66 HOH HOH . F 5 HOH A 41 441 71 HOH HOH . F 5 HOH A 42 442 73 HOH HOH . F 5 HOH A 43 443 75 HOH HOH . F 5 HOH A 44 444 76 HOH HOH . F 5 HOH A 45 445 77 HOH HOH . F 5 HOH A 46 446 80 HOH HOH . F 5 HOH A 47 447 82 HOH HOH . F 5 HOH A 48 448 83 HOH HOH . F 5 HOH A 49 449 85 HOH HOH . F 5 HOH A 50 450 86 HOH HOH . F 5 HOH A 51 451 90 HOH HOH . F 5 HOH A 52 452 91 HOH HOH . F 5 HOH A 53 453 92 HOH HOH . G 5 HOH B 1 701 78 HOH HOH . G 5 HOH B 2 702 11 HOH HOH . G 5 HOH B 3 703 72 HOH HOH . G 5 HOH B 4 704 74 HOH HOH . G 5 HOH B 5 705 30 HOH HOH . G 5 HOH B 6 706 13 HOH HOH . G 5 HOH B 7 707 87 HOH HOH . G 5 HOH B 8 708 39 HOH HOH . G 5 HOH B 9 709 99 HOH HOH . G 5 HOH B 10 710 102 HOH HOH . G 5 HOH B 11 711 6 HOH HOH . G 5 HOH B 12 712 68 HOH HOH . G 5 HOH B 13 713 12 HOH HOH . G 5 HOH B 14 714 14 HOH HOH . G 5 HOH B 15 715 15 HOH HOH . G 5 HOH B 16 716 16 HOH HOH . G 5 HOH B 17 717 17 HOH HOH . G 5 HOH B 18 718 24 HOH HOH . G 5 HOH B 19 719 25 HOH HOH . G 5 HOH B 20 720 27 HOH HOH . G 5 HOH B 21 721 29 HOH HOH . G 5 HOH B 22 722 31 HOH HOH . G 5 HOH B 23 723 33 HOH HOH . G 5 HOH B 24 724 35 HOH HOH . G 5 HOH B 25 725 37 HOH HOH . G 5 HOH B 26 726 41 HOH HOH . G 5 HOH B 27 727 42 HOH HOH . G 5 HOH B 28 728 44 HOH HOH . G 5 HOH B 29 729 45 HOH HOH . G 5 HOH B 30 730 46 HOH HOH . G 5 HOH B 31 731 47 HOH HOH . G 5 HOH B 32 732 49 HOH HOH . G 5 HOH B 33 733 52 HOH HOH . G 5 HOH B 34 734 55 HOH HOH . G 5 HOH B 35 735 62 HOH HOH . G 5 HOH B 36 736 63 HOH HOH . G 5 HOH B 37 737 64 HOH HOH . G 5 HOH B 38 738 67 HOH HOH . G 5 HOH B 39 739 69 HOH HOH . G 5 HOH B 40 740 79 HOH HOH . G 5 HOH B 41 741 88 HOH HOH . G 5 HOH B 42 742 89 HOH HOH . G 5 HOH B 43 743 94 HOH HOH . G 5 HOH B 44 744 95 HOH HOH . G 5 HOH B 45 745 96 HOH HOH . G 5 HOH B 46 746 97 HOH HOH . G 5 HOH B 47 747 98 HOH HOH . G 5 HOH B 48 748 100 HOH HOH . G 5 HOH B 49 749 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -67.894 54.821 -29.804 1 86.55 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . C 3 -67.933 55.997 -28.788 1 91.29 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . C 3 -66.565 56.203 -28.106 1 92.52 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . C 3 -66.058 54.887 -27.536 1 94.02 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . C 3 -65.971 53.874 -28.672 1 92.22 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . C 3 -65.462 52.518 -28.25 1 87.39 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . C 3 -67.996 57.991 -30.361 1 92.73 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . C 3 -66.721 57.546 -31.037 1 91.2 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . C 3 -68.468 57.233 -29.341 1 91.19 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . C 3 -66.672 57.189 -27.08 1 91.54 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . C 3 -64.783 55.05 -26.924 1 97.49 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . C 3 -67.285 53.661 -29.204 1 86.09 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . C 3 -65.654 51.577 -29.296 1 79.75 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . C 3 -68.583 59.01 -30.714 1 94.74 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #