data_4YN0
#
_model_server_result.job_id            M7IYk5IzWuTS7UiF1naDRw 
_model_server_result.datetime_utc      '2024-12-06 10:57:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yn0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4YN0 
#
_exptl.entry_id    4YN0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4YN0 
_cell.length_a            67.32 
_cell.length_b            67.32 
_cell.length_c            226.229 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YN0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 67 1_555 A SG CYS 41 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf2 A SG CYS 31 A CYS 70 1_555 A SG CYS 49 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 A SG CYS 52 A CYS 91 1_555 A SG CYS 67 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf4 A SG CYS 70 A CYS 109 1_555 A SG CYS 84 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 A SG CYS 74 A CYS 113 1_555 A SG CYS 92 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 A SG CYS 94 A CYS 133 1_555 A SG CYS 105 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf7 A SG CYS 111 A CYS 150 1_555 A SG CYS 129 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf8 A SG CYS 132 A CYS 171 1_555 A SG CYS 147 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
disulf ? disulf9 A SG CYS 153 A CYS 192 1_555 A SG CYS 172 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
covale ? covale1 A ND2 ASN 43 A ASN 82 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 B ND2 ASN 175 B ASN 467 1_555 E C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? 
metalc ? metalc1 A O CYS 111 A CYS 150 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc2 A O PRO 112 A PRO 151 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc3 A O TRP 115 A TRP 154 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc4 A OG SER 138 A SER 177 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc5 A O VAL 140 A VAL 179 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc6 D MG MG . A MG 302 1_555 F O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YN0 
_atom_sites.fract_transf_matrix[1][1]    0.014854 
_atom_sites.fract_transf_matrix[1][2]    0.008576 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00442 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 301 821 NAG NAG . 
D 4 MG A 1 302 1 MG MG . 
E 3 NAG B 1 601 4671 NAG NAG . 
F 5 HOH A 1 401 8 HOH HOH . 
F 5 HOH A 2 402 26 HOH HOH . 
F 5 HOH A 3 403 28 HOH HOH . 
F 5 HOH A 4 404 54 HOH HOH . 
F 5 HOH A 5 405 50 HOH HOH . 
F 5 HOH A 6 406 5 HOH HOH . 
F 5 HOH A 7 407 53 HOH HOH . 
F 5 HOH A 8 408 81 HOH HOH . 
F 5 HOH A 9 409 32 HOH HOH . 
F 5 HOH A 10 410 23 HOH HOH . 
F 5 HOH A 11 411 65 HOH HOH . 
F 5 HOH A 12 412 70 HOH HOH . 
F 5 HOH A 13 413 84 HOH HOH . 
F 5 HOH A 14 414 93 HOH HOH . 
F 5 HOH A 15 415 1 HOH HOH . 
F 5 HOH A 16 416 2 HOH HOH . 
F 5 HOH A 17 417 3 HOH HOH . 
F 5 HOH A 18 418 4 HOH HOH . 
F 5 HOH A 19 419 7 HOH HOH . 
F 5 HOH A 20 420 9 HOH HOH . 
F 5 HOH A 21 421 10 HOH HOH . 
F 5 HOH A 22 422 18 HOH HOH . 
F 5 HOH A 23 423 19 HOH HOH . 
F 5 HOH A 24 424 20 HOH HOH . 
F 5 HOH A 25 425 21 HOH HOH . 
F 5 HOH A 26 426 22 HOH HOH . 
F 5 HOH A 27 427 34 HOH HOH . 
F 5 HOH A 28 428 36 HOH HOH . 
F 5 HOH A 29 429 38 HOH HOH . 
F 5 HOH A 30 430 40 HOH HOH . 
F 5 HOH A 31 431 43 HOH HOH . 
F 5 HOH A 32 432 48 HOH HOH . 
F 5 HOH A 33 433 51 HOH HOH . 
F 5 HOH A 34 434 56 HOH HOH . 
F 5 HOH A 35 435 57 HOH HOH . 
F 5 HOH A 36 436 58 HOH HOH . 
F 5 HOH A 37 437 59 HOH HOH . 
F 5 HOH A 38 438 60 HOH HOH . 
F 5 HOH A 39 439 61 HOH HOH . 
F 5 HOH A 40 440 66 HOH HOH . 
F 5 HOH A 41 441 71 HOH HOH . 
F 5 HOH A 42 442 73 HOH HOH . 
F 5 HOH A 43 443 75 HOH HOH . 
F 5 HOH A 44 444 76 HOH HOH . 
F 5 HOH A 45 445 77 HOH HOH . 
F 5 HOH A 46 446 80 HOH HOH . 
F 5 HOH A 47 447 82 HOH HOH . 
F 5 HOH A 48 448 83 HOH HOH . 
F 5 HOH A 49 449 85 HOH HOH . 
F 5 HOH A 50 450 86 HOH HOH . 
F 5 HOH A 51 451 90 HOH HOH . 
F 5 HOH A 52 452 91 HOH HOH . 
F 5 HOH A 53 453 92 HOH HOH . 
G 5 HOH B 1 701 78 HOH HOH . 
G 5 HOH B 2 702 11 HOH HOH . 
G 5 HOH B 3 703 72 HOH HOH . 
G 5 HOH B 4 704 74 HOH HOH . 
G 5 HOH B 5 705 30 HOH HOH . 
G 5 HOH B 6 706 13 HOH HOH . 
G 5 HOH B 7 707 87 HOH HOH . 
G 5 HOH B 8 708 39 HOH HOH . 
G 5 HOH B 9 709 99 HOH HOH . 
G 5 HOH B 10 710 102 HOH HOH . 
G 5 HOH B 11 711 6 HOH HOH . 
G 5 HOH B 12 712 68 HOH HOH . 
G 5 HOH B 13 713 12 HOH HOH . 
G 5 HOH B 14 714 14 HOH HOH . 
G 5 HOH B 15 715 15 HOH HOH . 
G 5 HOH B 16 716 16 HOH HOH . 
G 5 HOH B 17 717 17 HOH HOH . 
G 5 HOH B 18 718 24 HOH HOH . 
G 5 HOH B 19 719 25 HOH HOH . 
G 5 HOH B 20 720 27 HOH HOH . 
G 5 HOH B 21 721 29 HOH HOH . 
G 5 HOH B 22 722 31 HOH HOH . 
G 5 HOH B 23 723 33 HOH HOH . 
G 5 HOH B 24 724 35 HOH HOH . 
G 5 HOH B 25 725 37 HOH HOH . 
G 5 HOH B 26 726 41 HOH HOH . 
G 5 HOH B 27 727 42 HOH HOH . 
G 5 HOH B 28 728 44 HOH HOH . 
G 5 HOH B 29 729 45 HOH HOH . 
G 5 HOH B 30 730 46 HOH HOH . 
G 5 HOH B 31 731 47 HOH HOH . 
G 5 HOH B 32 732 49 HOH HOH . 
G 5 HOH B 33 733 52 HOH HOH . 
G 5 HOH B 34 734 55 HOH HOH . 
G 5 HOH B 35 735 62 HOH HOH . 
G 5 HOH B 36 736 63 HOH HOH . 
G 5 HOH B 37 737 64 HOH HOH . 
G 5 HOH B 38 738 67 HOH HOH . 
G 5 HOH B 39 739 69 HOH HOH . 
G 5 HOH B 40 740 79 HOH HOH . 
G 5 HOH B 41 741 88 HOH HOH . 
G 5 HOH B 42 742 89 HOH HOH . 
G 5 HOH B 43 743 94 HOH HOH . 
G 5 HOH B 44 744 95 HOH HOH . 
G 5 HOH B 45 745 96 HOH HOH . 
G 5 HOH B 46 746 97 HOH HOH . 
G 5 HOH B 47 747 98 HOH HOH . 
G 5 HOH B 48 748 100 HOH HOH . 
G 5 HOH B 49 749 101 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -125.068 
_atom_site.Cartn_y               8.292 
_atom_site.Cartn_z               -11.561 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.25 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#