data_4YNE # _model_server_result.job_id 8E4HrwG8Ked0WfMHw2Y1bg _model_server_result.datetime_utc '2024-11-28 09:40:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":807}' # _entry.id 4YNE # _exptl.entry_id 4YNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YNE _cell.length_a 105.747 _cell.length_b 105.747 _cell.length_c 204.684 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 178 n n C1 C2 GOL sing 179 n n C1 H11 GOL sing 180 n n C1 H12 GOL sing 181 n n O1 HO1 GOL sing 182 n n C2 O2 GOL sing 183 n n C2 C3 GOL sing 184 n n C2 H2 GOL sing 185 n n O2 HO2 GOL sing 186 n n C3 O3 GOL sing 187 n n C3 H31 GOL sing 188 n n C3 H32 GOL sing 189 n n O3 HO3 GOL sing 190 n n # _atom_sites.entry_id 4YNE _atom_sites.fract_transf_matrix[1][1] 0.009457 _atom_sites.fract_transf_matrix[1][2] 0.00546 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4EK A 1 801 1 4EK LI1 . C 3 SO4 A 1 802 1 SO4 SO4 . D 3 SO4 A 1 803 2 SO4 SO4 . E 3 SO4 A 1 804 3 SO4 SO4 . F 3 SO4 A 1 805 4 SO4 SO4 . G 3 SO4 A 1 806 5 SO4 SO4 . H 4 GOL A 1 807 1 GOL GOL . I 5 HOH A 1 901 21 HOH HOH . I 5 HOH A 2 902 11 HOH HOH . I 5 HOH A 3 903 25 HOH HOH . I 5 HOH A 4 904 14 HOH HOH . I 5 HOH A 5 905 68 HOH HOH . I 5 HOH A 6 906 69 HOH HOH . I 5 HOH A 7 907 44 HOH HOH . I 5 HOH A 8 908 63 HOH HOH . I 5 HOH A 9 909 64 HOH HOH . I 5 HOH A 10 910 57 HOH HOH . I 5 HOH A 11 911 1 HOH HOH . I 5 HOH A 12 912 2 HOH HOH . I 5 HOH A 13 913 3 HOH HOH . I 5 HOH A 14 914 4 HOH HOH . I 5 HOH A 15 915 5 HOH HOH . I 5 HOH A 16 916 6 HOH HOH . I 5 HOH A 17 917 7 HOH HOH . I 5 HOH A 18 918 8 HOH HOH . I 5 HOH A 19 919 9 HOH HOH . I 5 HOH A 20 920 10 HOH HOH . I 5 HOH A 21 921 12 HOH HOH . I 5 HOH A 22 922 13 HOH HOH . I 5 HOH A 23 923 15 HOH HOH . I 5 HOH A 24 924 16 HOH HOH . I 5 HOH A 25 925 17 HOH HOH . I 5 HOH A 26 926 18 HOH HOH . I 5 HOH A 27 927 19 HOH HOH . I 5 HOH A 28 928 20 HOH HOH . I 5 HOH A 29 929 22 HOH HOH . I 5 HOH A 30 930 23 HOH HOH . I 5 HOH A 31 931 24 HOH HOH . I 5 HOH A 32 932 26 HOH HOH . I 5 HOH A 33 933 27 HOH HOH . I 5 HOH A 34 934 28 HOH HOH . I 5 HOH A 35 935 29 HOH HOH . I 5 HOH A 36 936 30 HOH HOH . I 5 HOH A 37 937 31 HOH HOH . I 5 HOH A 38 938 32 HOH HOH . I 5 HOH A 39 939 33 HOH HOH . I 5 HOH A 40 940 34 HOH HOH . I 5 HOH A 41 941 35 HOH HOH . I 5 HOH A 42 942 36 HOH HOH . I 5 HOH A 43 943 37 HOH HOH . I 5 HOH A 44 944 38 HOH HOH . I 5 HOH A 45 945 39 HOH HOH . I 5 HOH A 46 946 40 HOH HOH . I 5 HOH A 47 947 41 HOH HOH . I 5 HOH A 48 948 42 HOH HOH . I 5 HOH A 49 949 43 HOH HOH . I 5 HOH A 50 950 45 HOH HOH . I 5 HOH A 51 951 46 HOH HOH . I 5 HOH A 52 952 47 HOH HOH . I 5 HOH A 53 953 48 HOH HOH . I 5 HOH A 54 954 49 HOH HOH . I 5 HOH A 55 955 50 HOH HOH . I 5 HOH A 56 956 51 HOH HOH . I 5 HOH A 57 957 52 HOH HOH . I 5 HOH A 58 958 53 HOH HOH . I 5 HOH A 59 959 54 HOH HOH . I 5 HOH A 60 960 55 HOH HOH . I 5 HOH A 61 961 56 HOH HOH . I 5 HOH A 62 962 58 HOH HOH . I 5 HOH A 63 963 59 HOH HOH . I 5 HOH A 64 964 60 HOH HOH . I 5 HOH A 65 965 61 HOH HOH . I 5 HOH A 66 966 62 HOH HOH . I 5 HOH A 67 967 65 HOH HOH . I 5 HOH A 68 968 66 HOH HOH . I 5 HOH A 69 969 67 HOH HOH . I 5 HOH A 70 970 70 HOH HOH . I 5 HOH A 71 971 71 HOH HOH . I 5 HOH A 72 972 72 HOH HOH . I 5 HOH A 73 973 73 HOH HOH . I 5 HOH A 74 974 74 HOH HOH . I 5 HOH A 75 975 75 HOH HOH . I 5 HOH A 76 976 76 HOH HOH . I 5 HOH A 77 977 77 HOH HOH . I 5 HOH A 78 978 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -15.535 -45.684 -23.505 1 89.67 ? C1 GOL 807 A 1 HETATM 2 O O1 GOL . . . H 4 -16.177 -46.927 -23.319 1 92.14 ? O1 GOL 807 A 1 HETATM 3 C C2 GOL . . . H 4 -14.426 -45.518 -22.469 1 87.14 ? C2 GOL 807 A 1 HETATM 4 O O2 GOL . . . H 4 -13.186 -45.348 -23.127 1 88.63 ? O2 GOL 807 A 1 HETATM 5 C C3 GOL . . . H 4 -14.728 -44.336 -21.543 1 73.41 ? C3 GOL 807 A 1 HETATM 6 O O3 GOL . . . H 4 -15.891 -43.649 -21.968 1 59.57 ? O3 GOL 807 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #