data_4YNI
#
_model_server_result.job_id            rPaX6XPLt8sknYD8fUC83Q 
_model_server_result.datetime_utc      '2024-11-04 22:43:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yni 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4YNI 
#
_exptl.entry_id    4YNI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YNI 
_cell.length_a            57.69 
_cell.length_b            57.69 
_cell.length_c            121.87 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YNI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 93 A CYS 93 1_555 A CE2 TYR 157 A TYR 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? 
metalc ? metalc1 A OD1 ASP 135 A ASP 135 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc2 A O GLY 138 A GLY 138 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YNI 
_atom_sites.fract_transf_matrix[1][1]    0.017334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008205 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 1 NA NA . 
C 3 SIN A 1 302 1 SIN SIN . 
D 4 HOH A 1 401 7 HOH HOH . 
D 4 HOH A 2 402 78 HOH HOH . 
D 4 HOH A 3 403 87 HOH HOH . 
D 4 HOH A 4 404 19 HOH HOH . 
D 4 HOH A 5 405 41 HOH HOH . 
D 4 HOH A 6 406 42 HOH HOH . 
D 4 HOH A 7 407 70 HOH HOH . 
D 4 HOH A 8 408 80 HOH HOH . 
D 4 HOH A 9 409 67 HOH HOH . 
D 4 HOH A 10 410 43 HOH HOH . 
D 4 HOH A 11 411 64 HOH HOH . 
D 4 HOH A 12 412 39 HOH HOH . 
D 4 HOH A 13 413 12 HOH HOH . 
D 4 HOH A 14 414 31 HOH HOH . 
D 4 HOH A 15 415 27 HOH HOH . 
D 4 HOH A 16 416 26 HOH HOH . 
D 4 HOH A 17 417 6 HOH HOH . 
D 4 HOH A 18 418 44 HOH HOH . 
D 4 HOH A 19 419 14 HOH HOH . 
D 4 HOH A 20 420 79 HOH HOH . 
D 4 HOH A 21 421 82 HOH HOH . 
D 4 HOH A 22 422 57 HOH HOH . 
D 4 HOH A 23 423 54 HOH HOH . 
D 4 HOH A 24 424 62 HOH HOH . 
D 4 HOH A 25 425 63 HOH HOH . 
D 4 HOH A 26 426 81 HOH HOH . 
D 4 HOH A 27 427 23 HOH HOH . 
D 4 HOH A 28 428 49 HOH HOH . 
D 4 HOH A 29 429 52 HOH HOH . 
D 4 HOH A 30 430 61 HOH HOH . 
D 4 HOH A 31 431 1 HOH HOH . 
D 4 HOH A 32 432 2 HOH HOH . 
D 4 HOH A 33 433 3 HOH HOH . 
D 4 HOH A 34 434 4 HOH HOH . 
D 4 HOH A 35 435 5 HOH HOH . 
D 4 HOH A 36 436 8 HOH HOH . 
D 4 HOH A 37 437 9 HOH HOH . 
D 4 HOH A 38 438 10 HOH HOH . 
D 4 HOH A 39 439 11 HOH HOH . 
D 4 HOH A 40 440 13 HOH HOH . 
D 4 HOH A 41 441 15 HOH HOH . 
D 4 HOH A 42 442 16 HOH HOH . 
D 4 HOH A 43 443 17 HOH HOH . 
D 4 HOH A 44 444 18 HOH HOH . 
D 4 HOH A 45 445 20 HOH HOH . 
D 4 HOH A 46 446 21 HOH HOH . 
D 4 HOH A 47 447 22 HOH HOH . 
D 4 HOH A 48 448 24 HOH HOH . 
D 4 HOH A 49 449 25 HOH HOH . 
D 4 HOH A 50 450 28 HOH HOH . 
D 4 HOH A 51 451 29 HOH HOH . 
D 4 HOH A 52 452 30 HOH HOH . 
D 4 HOH A 53 453 32 HOH HOH . 
D 4 HOH A 54 454 33 HOH HOH . 
D 4 HOH A 55 455 34 HOH HOH . 
D 4 HOH A 56 456 35 HOH HOH . 
D 4 HOH A 57 457 36 HOH HOH . 
D 4 HOH A 58 458 37 HOH HOH . 
D 4 HOH A 59 459 38 HOH HOH . 
D 4 HOH A 60 460 40 HOH HOH . 
D 4 HOH A 61 461 45 HOH HOH . 
D 4 HOH A 62 462 46 HOH HOH . 
D 4 HOH A 63 463 47 HOH HOH . 
D 4 HOH A 64 464 48 HOH HOH . 
D 4 HOH A 65 465 50 HOH HOH . 
D 4 HOH A 66 466 51 HOH HOH . 
D 4 HOH A 67 467 53 HOH HOH . 
D 4 HOH A 68 468 55 HOH HOH . 
D 4 HOH A 69 469 56 HOH HOH . 
D 4 HOH A 70 470 58 HOH HOH . 
D 4 HOH A 71 471 59 HOH HOH . 
D 4 HOH A 72 472 60 HOH HOH . 
D 4 HOH A 73 473 65 HOH HOH . 
D 4 HOH A 74 474 66 HOH HOH . 
D 4 HOH A 75 475 68 HOH HOH . 
D 4 HOH A 76 476 71 HOH HOH . 
D 4 HOH A 77 477 72 HOH HOH . 
D 4 HOH A 78 478 73 HOH HOH . 
D 4 HOH A 79 479 74 HOH HOH . 
D 4 HOH A 80 480 75 HOH HOH . 
D 4 HOH A 81 481 76 HOH HOH . 
D 4 HOH A 82 482 77 HOH HOH . 
D 4 HOH A 83 483 84 HOH HOH . 
D 4 HOH A 84 484 85 HOH HOH . 
D 4 HOH A 85 485 86 HOH HOH . 
D 4 HOH A 86 486 88 HOH HOH . 
D 4 HOH A 87 487 89 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               80.774 
_atom_site.Cartn_y               52.789 
_atom_site.Cartn_z               15.251 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        46.82 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#