data_4YNP # _model_server_result.job_id EmhrzxKDRdClA8bhmxhZJA _model_server_result.datetime_utc '2024-11-21 17:11:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ynp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2301}' # _entry.id 4YNP # _exptl.entry_id 4YNP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YNP _cell.length_a 59.262 _cell.length_b 59.262 _cell.length_c 233.924 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 55 B CYS 2117 1_555 B SG CYS 60 B CYS 2122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 55 B CYS 2117 1_555 B SG CYS 66 B CYS 2128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? disulf ? disulf3 B SG CYS 60 B CYS 2122 1_555 B SG CYS 66 B CYS 2128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A SG CYS 29 A CYS 2091 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A SG CYS 31 A CYS 2093 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc3 A SG CYS 42 A CYS 2104 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc4 A SG CYS 42 A CYS 2104 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc5 A SG CYS 46 A CYS 2108 1_555 E ZN ZN . A ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 A SG CYS 55 A CYS 2117 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc7 A SG CYS 60 A CYS 2122 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc8 A SG CYS 66 A CYS 2128 1_555 D ZN ZN . A ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc9 A SG CYS 158 A CYS 2220 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc10 A SG CYS 206 A CYS 2268 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc11 A SG CYS 208 A CYS 2270 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc12 A SG CYS 213 A CYS 2275 1_555 C ZN ZN . A ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc13 B SG CYS 42 B CYS 2104 1_555 I ZN ZN . B ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc14 B SG CYS 46 B CYS 2108 1_555 I ZN ZN . B ZN 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc15 B SG CYS 55 B CYS 2117 1_555 H ZN ZN . B ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc16 B SG CYS 60 B CYS 2122 1_555 H ZN ZN . B ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc17 B SG CYS 158 B CYS 2220 1_555 G ZN ZN . B ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc18 B SG CYS 206 B CYS 2268 1_555 G ZN ZN . B ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc19 B SG CYS 208 B CYS 2270 1_555 G ZN ZN . B ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc20 B SG CYS 213 B CYS 2275 1_555 G ZN ZN . B ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YNP _atom_sites.fract_transf_matrix[1][1] 0.016874 _atom_sites.fract_transf_matrix[1][2] 0.009742 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2301 1 ZN ZN . D 2 ZN A 1 2302 2 ZN ZN . E 2 ZN A 1 2303 4 ZN ZN . F 3 SAM A 1 2304 7 SAM SAM . G 2 ZN B 1 2301 3 ZN ZN . H 2 ZN B 1 2302 5 ZN ZN . I 2 ZN B 1 2303 6 ZN ZN . J 3 SAM B 1 2304 8 SAM SAM . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.109 _atom_site.Cartn_y -8.329 _atom_site.Cartn_z 35.49 _atom_site.occupancy 0.87 _atom_site.B_iso_or_equiv 37.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #