data_4YNR # _model_server_result.job_id LlEgt6O6Jar71WSxUEtKQg _model_server_result.datetime_utc '2024-10-19 01:37:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ynr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4YNR # _exptl.entry_id 4YNR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 28.01 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBON MONOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YNR _cell.length_a 33.505 _cell.length_b 79.247 _cell.length_c 109.451 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 149 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 C FE HEM . A HEM 301 1_555 D C CMO . A CMO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 sing metalc ? metalc3 B NE2 HIS 93 B HIS 149 1_555 E FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc4 E FE HEM . B HEM 301 1_555 F C CMO . B CMO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 sing # _chem_comp.formula 'C O' _chem_comp.formula_weight 28.01 _chem_comp.id CMO _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBON MONOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id CMO _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 4YNR _atom_sites.fract_transf_matrix[1][1] 0.029846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 301 301 HEM HEM . D 3 CMO A 1 302 302 CMO CMO . E 2 HEM B 1 301 301 HEM HEM . F 3 CMO B 1 302 302 CMO CMO . G 4 HOH A 1 401 401 HOH HOH . G 4 HOH A 2 402 402 HOH HOH . G 4 HOH A 3 403 403 HOH HOH . G 4 HOH A 4 404 404 HOH HOH . G 4 HOH A 5 405 405 HOH HOH . G 4 HOH A 6 406 406 HOH HOH . G 4 HOH A 7 407 407 HOH HOH . G 4 HOH A 8 408 408 HOH HOH . G 4 HOH A 9 409 409 HOH HOH . G 4 HOH A 10 410 410 HOH HOH . G 4 HOH A 11 411 411 HOH HOH . G 4 HOH A 12 412 412 HOH HOH . G 4 HOH A 13 413 413 HOH HOH . G 4 HOH A 14 414 414 HOH HOH . G 4 HOH A 15 415 415 HOH HOH . G 4 HOH A 16 416 416 HOH HOH . G 4 HOH A 17 417 417 HOH HOH . G 4 HOH A 18 418 418 HOH HOH . G 4 HOH A 19 419 419 HOH HOH . G 4 HOH A 20 420 420 HOH HOH . G 4 HOH A 21 421 421 HOH HOH . G 4 HOH A 22 422 422 HOH HOH . G 4 HOH A 23 423 423 HOH HOH . G 4 HOH A 24 424 424 HOH HOH . G 4 HOH A 25 425 425 HOH HOH . G 4 HOH A 26 426 426 HOH HOH . G 4 HOH A 27 427 427 HOH HOH . G 4 HOH A 28 428 428 HOH HOH . G 4 HOH A 29 429 429 HOH HOH . G 4 HOH A 30 430 430 HOH HOH . G 4 HOH A 31 431 431 HOH HOH . G 4 HOH A 32 432 432 HOH HOH . G 4 HOH A 33 433 433 HOH HOH . G 4 HOH A 34 434 434 HOH HOH . G 4 HOH A 35 435 435 HOH HOH . G 4 HOH A 36 436 436 HOH HOH . G 4 HOH A 37 437 437 HOH HOH . G 4 HOH A 38 438 438 HOH HOH . G 4 HOH A 39 439 439 HOH HOH . G 4 HOH A 40 440 440 HOH HOH . G 4 HOH A 41 441 441 HOH HOH . G 4 HOH A 42 442 442 HOH HOH . G 4 HOH A 43 443 443 HOH HOH . G 4 HOH A 44 444 444 HOH HOH . G 4 HOH A 45 445 445 HOH HOH . G 4 HOH A 46 446 446 HOH HOH . G 4 HOH A 47 447 447 HOH HOH . G 4 HOH A 48 448 448 HOH HOH . G 4 HOH A 49 449 449 HOH HOH . G 4 HOH A 50 450 450 HOH HOH . G 4 HOH A 51 451 451 HOH HOH . G 4 HOH A 52 452 453 HOH HOH . G 4 HOH A 53 453 454 HOH HOH . G 4 HOH A 54 454 455 HOH HOH . G 4 HOH A 55 456 457 HOH HOH . G 4 HOH A 56 457 458 HOH HOH . G 4 HOH A 57 458 459 HOH HOH . G 4 HOH A 58 459 460 HOH HOH . G 4 HOH A 59 460 461 HOH HOH . G 4 HOH A 60 461 462 HOH HOH . G 4 HOH A 61 462 463 HOH HOH . G 4 HOH A 62 463 464 HOH HOH . G 4 HOH A 63 464 465 HOH HOH . G 4 HOH A 64 465 466 HOH HOH . G 4 HOH A 65 466 467 HOH HOH . G 4 HOH A 66 467 468 HOH HOH . G 4 HOH A 67 468 469 HOH HOH . G 4 HOH A 68 469 470 HOH HOH . G 4 HOH A 69 470 471 HOH HOH . G 4 HOH A 70 471 472 HOH HOH . H 4 HOH B 1 401 401 HOH HOH . H 4 HOH B 2 402 402 HOH HOH . H 4 HOH B 3 403 403 HOH HOH . H 4 HOH B 4 404 404 HOH HOH . H 4 HOH B 5 405 405 HOH HOH . H 4 HOH B 6 406 406 HOH HOH . H 4 HOH B 7 407 407 HOH HOH . H 4 HOH B 8 408 408 HOH HOH . H 4 HOH B 9 409 409 HOH HOH . H 4 HOH B 10 410 410 HOH HOH . H 4 HOH B 11 411 411 HOH HOH . H 4 HOH B 12 412 412 HOH HOH . H 4 HOH B 13 413 413 HOH HOH . H 4 HOH B 14 414 414 HOH HOH . H 4 HOH B 15 415 415 HOH HOH . H 4 HOH B 16 416 416 HOH HOH . H 4 HOH B 17 417 417 HOH HOH . H 4 HOH B 18 418 418 HOH HOH . H 4 HOH B 19 419 419 HOH HOH . H 4 HOH B 20 420 420 HOH HOH . H 4 HOH B 21 421 421 HOH HOH . H 4 HOH B 22 422 422 HOH HOH . H 4 HOH B 23 423 423 HOH HOH . H 4 HOH B 24 424 424 HOH HOH . H 4 HOH B 25 425 425 HOH HOH . H 4 HOH B 26 426 426 HOH HOH . H 4 HOH B 27 427 427 HOH HOH . H 4 HOH B 28 428 428 HOH HOH . H 4 HOH B 29 429 429 HOH HOH . H 4 HOH B 30 430 430 HOH HOH . H 4 HOH B 31 431 431 HOH HOH . H 4 HOH B 32 432 432 HOH HOH . H 4 HOH B 33 433 433 HOH HOH . H 4 HOH B 34 434 434 HOH HOH . H 4 HOH B 35 435 435 HOH HOH . H 4 HOH B 36 436 436 HOH HOH . H 4 HOH B 37 437 437 HOH HOH . H 4 HOH B 38 438 438 HOH HOH . H 4 HOH B 39 439 439 HOH HOH . H 4 HOH B 40 440 440 HOH HOH . H 4 HOH B 41 441 441 HOH HOH . H 4 HOH B 42 442 442 HOH HOH . H 4 HOH B 43 443 443 HOH HOH . H 4 HOH B 44 444 444 HOH HOH . H 4 HOH B 45 445 445 HOH HOH . H 4 HOH B 46 446 446 HOH HOH . H 4 HOH B 47 447 447 HOH HOH . H 4 HOH B 48 448 448 HOH HOH . H 4 HOH B 49 449 449 HOH HOH . H 4 HOH B 50 450 450 HOH HOH . H 4 HOH B 51 451 451 HOH HOH . H 4 HOH B 52 453 453 HOH HOH . H 4 HOH B 53 454 454 HOH HOH . H 4 HOH B 54 455 455 HOH HOH . H 4 HOH B 55 456 456 HOH HOH . H 4 HOH B 56 457 457 HOH HOH . H 4 HOH B 57 458 458 HOH HOH . H 4 HOH B 58 459 459 HOH HOH . H 4 HOH B 59 460 460 HOH HOH . H 4 HOH B 60 461 461 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CMO . . . D 3 8.18 87.846 7.256 1 17.27 ? C CMO 302 A 1 HETATM 2 O O CMO . . . D 3 8.35 88.124 6.087 1 27.44 ? O CMO 302 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 2 #