data_4YO8
#
_model_server_result.job_id            yPsKDRE9TtvoAMy3EH1sTw 
_model_server_result.datetime_utc      '2024-11-08 17:57:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yo8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4YO8 
#
_exptl.entry_id    4YO8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              277.365 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            {[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl](hexyl)amino}methanol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.08 
_cell.angle_gamma         90 
_cell.entry_id            4YO8 
_cell.length_a            65.091 
_cell.length_b            69.446 
_cell.length_c            65.566 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YO8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 56 A HIS 42 1_555 D ZN ZN . A ZN 302 2_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc2 A OE2 GLU 225 A GLU 211 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
metalc ? metalc3 B NE2 HIS 5 B HIS -9 1_555 D ZN ZN . A ZN 302 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc4 B ND1 HIS 7 B HIS -7 1_555 D ZN ZN . A ZN 302 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
#
_chem_comp.formula           'C14 H23 N5 O' 
_chem_comp.formula_weight    277.365 
_chem_comp.id                4EZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              {[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl](hexyl)amino}methanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C6 4EZ sing 1 n n 
N7 C8 4EZ sing 2 n y 
N7 C5 4EZ sing 3 n y 
C8 C9 4EZ doub 4 n y 
C6 C5 4EZ doub 5 n y 
C6 N1 4EZ sing 6 n y 
C5 C4 4EZ sing 7 n y 
N1 C2 4EZ doub 8 n y 
C9 C4 4EZ sing 9 n y 
C9 C10 4EZ sing 10 n n 
C4 N3 4EZ doub 11 n y 
C10 N1' 4EZ sing 12 n n 
C2 N3 4EZ sing 13 n y 
N1' C1' 4EZ sing 14 n n 
N1' C11 4EZ sing 15 n n 
C1' O1 4EZ sing 16 n n 
C11 C12 4EZ sing 17 n n 
C12 C13 4EZ sing 18 n n 
C13 C14 4EZ sing 19 n n 
C14 C15 4EZ sing 20 n n 
C15 C16 4EZ sing 21 n n 
C1' H1 4EZ sing 22 n n 
C1' H2 4EZ sing 23 n n 
C11 H4 4EZ sing 24 n n 
C11 H5 4EZ sing 25 n n 
C12 H6 4EZ sing 26 n n 
C12 H7 4EZ sing 27 n n 
C13 H8 4EZ sing 28 n n 
C13 H9 4EZ sing 29 n n 
C15 H10 4EZ sing 30 n n 
C15 H11 4EZ sing 31 n n 
C16 H12 4EZ sing 32 n n 
C16 H13 4EZ sing 33 n n 
C16 H14 4EZ sing 34 n n 
C10 H15 4EZ sing 35 n n 
C10 H16 4EZ sing 36 n n 
C8 H17 4EZ sing 37 n n 
N7 H18 4EZ sing 38 n n 
N6 H19 4EZ sing 39 n n 
N6 H20 4EZ sing 40 n n 
C2 H21 4EZ sing 41 n n 
O1 H22 4EZ sing 42 n n 
C14 H23 4EZ sing 43 n n 
C14 H24 4EZ sing 44 n n 
#
_atom_sites.entry_id                     4YO8 
_atom_sites.fract_transf_matrix[1][1]    0.015363 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006546 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0144 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016579 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4EZ A 1 301 1 4EZ Hms . 
D 3 ZN A 1 302 1 ZN ZN . 
E 2 4EZ B 1 301 2 4EZ Hms . 
F 4 HOH A 1 401 56 HOH HOH . 
F 4 HOH A 2 402 89 HOH HOH . 
F 4 HOH A 3 403 65 HOH HOH . 
F 4 HOH A 4 404 1 HOH HOH . 
F 4 HOH A 5 405 3 HOH HOH . 
F 4 HOH A 6 406 4 HOH HOH . 
F 4 HOH A 7 407 5 HOH HOH . 
F 4 HOH A 8 408 6 HOH HOH . 
F 4 HOH A 9 409 7 HOH HOH . 
F 4 HOH A 10 410 13 HOH HOH . 
F 4 HOH A 11 411 14 HOH HOH . 
F 4 HOH A 12 412 15 HOH HOH . 
F 4 HOH A 13 413 16 HOH HOH . 
F 4 HOH A 14 414 20 HOH HOH . 
F 4 HOH A 15 415 21 HOH HOH . 
F 4 HOH A 16 416 23 HOH HOH . 
F 4 HOH A 17 417 24 HOH HOH . 
F 4 HOH A 18 418 25 HOH HOH . 
F 4 HOH A 19 419 26 HOH HOH . 
F 4 HOH A 20 420 27 HOH HOH . 
F 4 HOH A 21 421 28 HOH HOH . 
F 4 HOH A 22 422 29 HOH HOH . 
F 4 HOH A 23 423 31 HOH HOH . 
F 4 HOH A 24 424 32 HOH HOH . 
F 4 HOH A 25 425 33 HOH HOH . 
F 4 HOH A 26 426 39 HOH HOH . 
F 4 HOH A 27 427 43 HOH HOH . 
F 4 HOH A 28 428 44 HOH HOH . 
F 4 HOH A 29 429 46 HOH HOH . 
F 4 HOH A 30 430 47 HOH HOH . 
F 4 HOH A 31 431 48 HOH HOH . 
F 4 HOH A 32 432 54 HOH HOH . 
F 4 HOH A 33 433 55 HOH HOH . 
F 4 HOH A 34 434 63 HOH HOH . 
F 4 HOH A 35 435 64 HOH HOH . 
F 4 HOH A 36 436 69 HOH HOH . 
F 4 HOH A 37 437 71 HOH HOH . 
F 4 HOH A 38 438 73 HOH HOH . 
F 4 HOH A 39 439 74 HOH HOH . 
F 4 HOH A 40 440 75 HOH HOH . 
F 4 HOH A 41 441 76 HOH HOH . 
F 4 HOH A 42 442 78 HOH HOH . 
F 4 HOH A 43 443 79 HOH HOH . 
F 4 HOH A 44 444 81 HOH HOH . 
F 4 HOH A 45 445 87 HOH HOH . 
F 4 HOH A 46 446 88 HOH HOH . 
F 4 HOH A 47 447 90 HOH HOH . 
F 4 HOH A 48 448 91 HOH HOH . 
F 4 HOH A 49 449 92 HOH HOH . 
F 4 HOH A 50 450 93 HOH HOH . 
F 4 HOH A 51 451 98 HOH HOH . 
F 4 HOH A 52 452 99 HOH HOH . 
F 4 HOH A 53 453 100 HOH HOH . 
G 4 HOH B 1 401 68 HOH HOH . 
G 4 HOH B 2 402 83 HOH HOH . 
G 4 HOH B 3 403 96 HOH HOH . 
G 4 HOH B 4 404 2 HOH HOH . 
G 4 HOH B 5 405 8 HOH HOH . 
G 4 HOH B 6 406 9 HOH HOH . 
G 4 HOH B 7 407 10 HOH HOH . 
G 4 HOH B 8 408 11 HOH HOH . 
G 4 HOH B 9 409 12 HOH HOH . 
G 4 HOH B 10 410 17 HOH HOH . 
G 4 HOH B 11 411 18 HOH HOH . 
G 4 HOH B 12 412 19 HOH HOH . 
G 4 HOH B 13 413 22 HOH HOH . 
G 4 HOH B 14 414 30 HOH HOH . 
G 4 HOH B 15 415 34 HOH HOH . 
G 4 HOH B 16 416 35 HOH HOH . 
G 4 HOH B 17 417 36 HOH HOH . 
G 4 HOH B 18 418 37 HOH HOH . 
G 4 HOH B 19 419 38 HOH HOH . 
G 4 HOH B 20 420 40 HOH HOH . 
G 4 HOH B 21 421 41 HOH HOH . 
G 4 HOH B 22 422 42 HOH HOH . 
G 4 HOH B 23 423 45 HOH HOH . 
G 4 HOH B 24 424 49 HOH HOH . 
G 4 HOH B 25 425 50 HOH HOH . 
G 4 HOH B 26 426 51 HOH HOH . 
G 4 HOH B 27 427 52 HOH HOH . 
G 4 HOH B 28 428 53 HOH HOH . 
G 4 HOH B 29 429 57 HOH HOH . 
G 4 HOH B 30 430 58 HOH HOH . 
G 4 HOH B 31 431 59 HOH HOH . 
G 4 HOH B 32 432 60 HOH HOH . 
G 4 HOH B 33 433 61 HOH HOH . 
G 4 HOH B 34 434 62 HOH HOH . 
G 4 HOH B 35 435 66 HOH HOH . 
G 4 HOH B 36 436 67 HOH HOH . 
G 4 HOH B 37 437 70 HOH HOH . 
G 4 HOH B 38 438 72 HOH HOH . 
G 4 HOH B 39 439 77 HOH HOH . 
G 4 HOH B 40 440 80 HOH HOH . 
G 4 HOH B 41 441 82 HOH HOH . 
G 4 HOH B 42 442 84 HOH HOH . 
G 4 HOH B 43 443 85 HOH HOH . 
G 4 HOH B 44 444 86 HOH HOH . 
G 4 HOH B 45 445 94 HOH HOH . 
G 4 HOH B 46 446 95 HOH HOH . 
G 4 HOH B 47 447 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' 4EZ . . . C 2 -5.525 17.328 -24.398 1 36.55 ? C1' 4EZ 301 A 1 
HETATM 2 N N1' 4EZ . . . C 2 -6.776 18.088 -24.746 1 35.55 ? N1' 4EZ 301 A 1 
HETATM 3 C C11 4EZ . . . C 2 -6.658 19.352 -23.977 1 37.4 ? C11 4EZ 301 A 1 
HETATM 4 C C12 4EZ . . . C 2 -7.488 19.394 -22.699 1 36.85 ? C12 4EZ 301 A 1 
HETATM 5 C C13 4EZ . . . C 2 -8.098 20.805 -22.574 1 40.19 ? C13 4EZ 301 A 1 
HETATM 6 C C15 4EZ . . . C 2 -8.629 21.82 -20.327 1 41.66 ? C15 4EZ 301 A 1 
HETATM 7 C C16 4EZ . . . C 2 -9.605 21.855 -19.17 1 40.45 ? C16 4EZ 301 A 1 
HETATM 8 C C10 4EZ . . . C 2 -6.801 18.147 -26.219 1 28.73 ? C10 4EZ 301 A 1 
HETATM 9 C C9 4EZ . . . C 2 -6.681 19.491 -26.896 1 28.13 ? C9 4EZ 301 A 1 
HETATM 10 C C4 4EZ . . . C 2 -5.687 20.554 -26.767 1 26.81 ? C4 4EZ 301 A 1 
HETATM 11 N N3 4EZ . . . C 2 -4.585 20.629 -26.024 1 25.5 ? N3 4EZ 301 A 1 
HETATM 12 C C8 4EZ . . . C 2 -7.56 19.996 -27.849 1 25.93 ? C8 4EZ 301 A 1 
HETATM 13 N N7 4EZ . . . C 2 -7.193 21.235 -28.265 1 26.42 ? N7 4EZ 301 A 1 
HETATM 14 C C5 4EZ . . . C 2 -6.088 21.632 -27.662 1 26.31 ? C5 4EZ 301 A 1 
HETATM 15 C C6 4EZ . . . C 2 -5.211 22.811 -27.694 1 25.65 ? C6 4EZ 301 A 1 
HETATM 16 N N6 4EZ . . . C 2 -5.465 23.867 -28.483 1 26.83 ? N6 4EZ 301 A 1 
HETATM 17 N N1 4EZ . . . C 2 -4.127 22.788 -26.903 1 24.41 ? N1 4EZ 301 A 1 
HETATM 18 C C2 4EZ . . . C 2 -3.832 21.745 -26.122 1 25.14 ? C2 4EZ 301 A 1 
HETATM 19 O O1 4EZ . . . C 2 -5.499 17.213 -22.995 1 35.09 ? O1 4EZ 301 A 1 
HETATM 20 C C14 4EZ . . . C 2 -9.148 20.953 -21.467 1 40.25 ? C14 4EZ 301 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#