data_4YOA # _model_server_result.job_id fMg8DI3Htp9buh_Y73L7eg _model_server_result.datetime_utc '2024-12-02 16:42:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yoa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":100}' # _entry.id 4YOA # _exptl.entry_id 4YOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YOA _cell.length_a 45.47 _cell.length_b 45.47 _cell.length_c 102.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -51.11 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H37 N3 O7 S' _chem_comp.formula_weight 547.664 _chem_comp.id 017 _chem_comp.mon_nstd_flag . _chem_comp.name (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Darunavir;TMC114;UIC-94017 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 017 sing 1 n n N1 H11 017 sing 2 n n N1 H12 017 sing 3 n n C2 C3 017 doub 4 n y C2 C7 017 sing 5 n y C3 C4 017 sing 6 n y C3 H3 017 sing 7 n n C4 C5 017 doub 8 n y C4 H4 017 sing 9 n n C5 C6 017 sing 10 n y C5 S8 017 sing 11 n n C6 C7 017 doub 12 n y C6 H6 017 sing 13 n n C7 H7 017 sing 14 n n S8 O9 017 doub 15 n n S8 O10 017 doub 16 n n S8 N11 017 sing 17 n n N11 C12 017 sing 18 n n N11 C16 017 sing 19 n n C12 C13 017 sing 20 n n C12 H121 017 sing 21 n n C12 H122 017 sing 22 n n C13 C14 017 sing 23 n n C13 C15 017 sing 24 n n C13 H13 017 sing 25 n n C14 H141 017 sing 26 n n C14 H142 017 sing 27 n n C14 H143 017 sing 28 n n C15 H151 017 sing 29 n n C15 H152 017 sing 30 n n C15 H153 017 sing 31 n n C16 C17 017 sing 32 n n C16 H161 017 sing 33 n n C16 H162 017 sing 34 n n C17 O18 017 sing 35 n n C17 C19 017 sing 36 n n C17 H17 017 sing 37 n n O18 H18 017 sing 38 n n C19 N20 017 sing 39 n n C19 C32 017 sing 40 n n C19 H19 017 sing 41 n n N20 C21 017 sing 42 n n N20 H20 017 sing 43 n n C21 O22 017 doub 44 n n C21 O23 017 sing 45 n n O23 C24 017 sing 46 n n C24 C25 017 sing 47 n n C24 C31 017 sing 48 n n C24 H24 017 sing 49 n n C25 O26 017 sing 50 n n C25 H251 017 sing 51 n n C25 H252 017 sing 52 n n O26 C27 017 sing 53 n n C27 O28 017 sing 54 n n C27 C31 017 sing 55 n n C27 H27 017 sing 56 n n O28 C29 017 sing 57 n n C29 C30 017 sing 58 n n C29 H291 017 sing 59 n n C29 H292 017 sing 60 n n C30 C31 017 sing 61 n n C30 H301 017 sing 62 n n C30 H302 017 sing 63 n n C31 H31 017 sing 64 n n C32 C38 017 sing 65 n n C32 H321 017 sing 66 n n C32 H322 017 sing 67 n n C33 C34 017 doub 68 n y C33 C38 017 sing 69 n y C33 H33 017 sing 70 n n C34 C35 017 sing 71 n y C34 H34 017 sing 72 n n C35 C36 017 doub 73 n y C35 H35 017 sing 74 n n C36 C37 017 sing 75 n y C36 H36 017 sing 76 n n C37 C38 017 doub 77 n y C37 H37 017 sing 78 n n # _atom_sites.entry_id 4YOA _atom_sites.fract_transf_matrix[1][1] 0.021993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 017 A 1 100 100 017 017 . C 3 HOH A 1 201 55 HOH HOH . C 3 HOH A 2 202 69 HOH HOH . C 3 HOH A 3 203 17 HOH HOH . C 3 HOH A 4 204 29 HOH HOH . C 3 HOH A 5 205 20 HOH HOH . C 3 HOH A 6 206 1 HOH HOH . C 3 HOH A 7 207 25 HOH HOH . C 3 HOH A 8 208 53 HOH HOH . C 3 HOH A 9 209 6 HOH HOH . C 3 HOH A 10 210 3 HOH HOH . C 3 HOH A 11 211 30 HOH HOH . C 3 HOH A 12 212 7 HOH HOH . C 3 HOH A 13 213 34 HOH HOH . C 3 HOH A 14 214 9 HOH HOH . C 3 HOH A 15 215 33 HOH HOH . C 3 HOH A 16 216 14 HOH HOH . C 3 HOH A 17 217 40 HOH HOH . C 3 HOH A 18 218 43 HOH HOH . C 3 HOH A 19 219 12 HOH HOH . C 3 HOH A 20 220 11 HOH HOH . C 3 HOH A 21 221 13 HOH HOH . C 3 HOH A 22 222 8 HOH HOH . C 3 HOH A 23 223 38 HOH HOH . C 3 HOH A 24 224 64 HOH HOH . C 3 HOH A 25 225 68 HOH HOH . C 3 HOH A 26 226 35 HOH HOH . C 3 HOH A 27 227 50 HOH HOH . C 3 HOH A 28 228 4 HOH HOH . C 3 HOH A 29 229 59 HOH HOH . C 3 HOH A 30 230 31 HOH HOH . C 3 HOH A 31 231 18 HOH HOH . C 3 HOH A 32 232 66 HOH HOH . C 3 HOH A 33 233 26 HOH HOH . C 3 HOH A 34 234 36 HOH HOH . C 3 HOH A 35 235 37 HOH HOH . C 3 HOH A 36 236 39 HOH HOH . C 3 HOH A 37 237 24 HOH HOH . C 3 HOH A 38 238 19 HOH HOH . C 3 HOH A 39 239 61 HOH HOH . C 3 HOH A 40 240 51 HOH HOH . C 3 HOH A 41 241 63 HOH HOH . C 3 HOH A 42 242 44 HOH HOH . C 3 HOH A 43 243 71 HOH HOH . C 3 HOH A 44 244 57 HOH HOH . C 3 HOH A 45 245 67 HOH HOH . C 3 HOH A 46 246 58 HOH HOH . C 3 HOH A 47 247 65 HOH HOH . C 3 HOH A 48 248 56 HOH HOH . C 3 HOH A 49 249 49 HOH HOH . C 3 HOH A 50 250 2 HOH HOH . C 3 HOH A 51 251 5 HOH HOH . C 3 HOH A 52 252 10 HOH HOH . C 3 HOH A 53 253 15 HOH HOH . C 3 HOH A 54 254 16 HOH HOH . C 3 HOH A 55 255 21 HOH HOH . C 3 HOH A 56 256 22 HOH HOH . C 3 HOH A 57 257 23 HOH HOH . C 3 HOH A 58 258 27 HOH HOH . C 3 HOH A 59 259 28 HOH HOH . C 3 HOH A 60 260 32 HOH HOH . C 3 HOH A 61 261 41 HOH HOH . C 3 HOH A 62 262 42 HOH HOH . C 3 HOH A 63 263 45 HOH HOH . C 3 HOH A 64 264 46 HOH HOH . C 3 HOH A 65 265 47 HOH HOH . C 3 HOH A 66 266 48 HOH HOH . C 3 HOH A 67 267 52 HOH HOH . C 3 HOH A 68 268 54 HOH HOH . C 3 HOH A 69 269 60 HOH HOH . C 3 HOH A 70 270 62 HOH HOH . C 3 HOH A 71 271 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 017 . . . B 2 -1.497 13.086 -24.168 0.59 75.95 ? N1 017 100 A 1 HETATM 2 C C2 017 . . . B 2 -2.566 12.266 -24.095 0.59 77.18 ? C2 017 100 A 1 HETATM 3 C C3 017 . . . B 2 -3.678 12.503 -24.894 0.59 83.12 ? C3 017 100 A 1 HETATM 4 C C4 017 . . . B 2 -4.787 11.667 -24.818 0.59 86.92 ? C4 017 100 A 1 HETATM 5 C C5 017 . . . B 2 -4.778 10.574 -23.956 0.59 86.96 ? C5 017 100 A 1 HETATM 6 C C6 017 . . . B 2 -3.657 10.353 -23.152 0.59 81.97 ? C6 017 100 A 1 HETATM 7 C C7 017 . . . B 2 -2.549 11.19 -23.221 0.59 75.3 ? C7 017 100 A 1 HETATM 8 S S8 017 . . . B 2 -6.042 9.591 -23.835 0.59 119.9 ? S8 017 100 A 1 HETATM 9 O O9 017 . . . B 2 -5.839 8.757 -22.684 0.59 116.32 ? O9 017 100 A 1 HETATM 10 O O10 017 . . . B 2 -7.22 10.379 -23.602 0.59 123.56 ? O10 017 100 A 1 HETATM 11 N N11 017 . . . B 2 -6.297 8.653 -25.033 0.59 117.3 ? N11 017 100 A 1 HETATM 12 C C12 017 . . . B 2 -6.521 9.191 -26.389 0.59 117.42 ? C12 017 100 A 1 HETATM 13 C C13 017 . . . B 2 -5.443 8.795 -27.411 0.59 115.27 ? C13 017 100 A 1 HETATM 14 C C14 017 . . . B 2 -6.104 8.387 -28.726 0.59 112.65 ? C14 017 100 A 1 HETATM 15 C C15 017 . . . B 2 -4.415 9.888 -27.674 0.59 114.38 ? C15 017 100 A 1 HETATM 16 C C16 017 . . . B 2 -6.403 7.22 -24.699 0.59 114.16 ? C16 017 100 A 1 HETATM 17 C C17 017 . . . B 2 -7.059 6.367 -25.791 0.59 112.64 ? C17 017 100 A 1 HETATM 18 O O18 017 . . . B 2 -6.164 5.279 -26.057 0.59 105.36 ? O18 017 100 A 1 HETATM 19 C C19 017 . . . B 2 -8.444 5.8 -25.467 0.59 117.16 ? C19 017 100 A 1 HETATM 20 N N20 017 . . . B 2 -8.991 5.136 -26.651 0.59 118.08 ? N20 017 100 A 1 HETATM 21 C C21 017 . . . B 2 -9.218 5.723 -27.841 0.59 117.01 ? C21 017 100 A 1 HETATM 22 O O22 017 . . . B 2 -9.663 6.855 -27.957 0.59 119.23 ? O22 017 100 A 1 HETATM 23 O O23 017 . . . B 2 -8.955 4.949 -29.059 0.59 102.37 ? O23 017 100 A 1 HETATM 24 C C24 017 . . . B 2 -9.497 5.483 -30.278 0.59 73.4 ? C24 017 100 A 1 HETATM 25 C C25 017 . . . B 2 -8.52 5.294 -31.439 0.59 54.98 ? C25 017 100 A 1 HETATM 26 O O26 017 . . . B 2 -8.915 4.105 -32.153 0.59 32.75 ? O26 017 100 A 1 HETATM 27 C C27 017 . . . B 2 -10.271 3.775 -31.822 0.59 46.59 ? C27 017 100 A 1 HETATM 28 O O28 017 . . . B 2 -10.395 2.438 -31.329 0.59 40.18 ? O28 017 100 A 1 HETATM 29 C C29 017 . . . B 2 -11.133 2.379 -30.113 0.59 47.39 ? C29 017 100 A 1 HETATM 30 C C30 017 . . . B 2 -11.243 3.798 -29.588 0.59 56.59 ? C30 017 100 A 1 HETATM 31 C C31 017 . . . B 2 -10.717 4.685 -30.698 0.59 59.67 ? C31 017 100 A 1 HETATM 32 C C32 017 . . . B 2 -8.395 4.822 -24.288 0.59 114.38 ? C32 017 100 A 1 HETATM 33 C C33 017 . . . B 2 -9.141 4.611 -21.891 0.59 105.41 ? C33 017 100 A 1 HETATM 34 C C34 017 . . . B 2 -9.725 5.13 -20.74 0.59 99.92 ? C34 017 100 A 1 HETATM 35 C C35 017 . . . B 2 -10.198 6.434 -20.722 0.59 99.63 ? C35 017 100 A 1 HETATM 36 C C36 017 . . . B 2 -10.092 7.219 -21.862 0.59 104.92 ? C36 017 100 A 1 HETATM 37 C C37 017 . . . B 2 -9.509 6.7 -23.014 0.59 111.1 ? C37 017 100 A 1 HETATM 38 C C38 017 . . . B 2 -9.031 5.394 -23.035 0.59 112.68 ? C38 017 100 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #