data_4YOM
#
_model_server_result.job_id            BRdS9N1ueHg4J21UxQcTbQ 
_model_server_result.datetime_utc      '2024-11-24 21:36:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yom 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4YOM 
#
_exptl.entry_id    4YOM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.29 
_cell.angle_gamma         90 
_cell.entry_id            4YOM 
_cell.length_a            98.111 
_cell.length_b            87.271 
_cell.length_c            80.301 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YOM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4YOM 
_atom_sites.fract_transf_matrix[1][1]    0.010193 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000408 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011459 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012463 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO B 1 401 1 EDO EDO . 
D 3 EDO B 1 402 2 EDO EDO . 
E 4 HOH B 1 501 11 HOH HOH . 
E 4 HOH B 2 502 26 HOH HOH . 
E 4 HOH B 3 503 21 HOH HOH . 
E 4 HOH B 4 504 13 HOH HOH . 
E 4 HOH B 5 505 28 HOH HOH . 
E 4 HOH B 6 506 70 HOH HOH . 
E 4 HOH B 7 507 33 HOH HOH . 
E 4 HOH B 8 508 16 HOH HOH . 
E 4 HOH B 9 509 32 HOH HOH . 
E 4 HOH B 10 510 69 HOH HOH . 
E 4 HOH B 11 511 71 HOH HOH . 
E 4 HOH B 12 512 43 HOH HOH . 
E 4 HOH B 13 513 1 HOH HOH . 
E 4 HOH B 14 514 2 HOH HOH . 
E 4 HOH B 15 515 3 HOH HOH . 
E 4 HOH B 16 516 5 HOH HOH . 
E 4 HOH B 17 517 6 HOH HOH . 
E 4 HOH B 18 518 7 HOH HOH . 
E 4 HOH B 19 519 8 HOH HOH . 
E 4 HOH B 20 520 9 HOH HOH . 
E 4 HOH B 21 521 10 HOH HOH . 
E 4 HOH B 22 522 12 HOH HOH . 
E 4 HOH B 23 523 14 HOH HOH . 
E 4 HOH B 24 524 17 HOH HOH . 
E 4 HOH B 25 525 18 HOH HOH . 
E 4 HOH B 26 526 19 HOH HOH . 
E 4 HOH B 27 527 20 HOH HOH . 
E 4 HOH B 28 528 22 HOH HOH . 
E 4 HOH B 29 529 23 HOH HOH . 
E 4 HOH B 30 530 24 HOH HOH . 
E 4 HOH B 31 531 25 HOH HOH . 
E 4 HOH B 32 532 29 HOH HOH . 
E 4 HOH B 33 533 30 HOH HOH . 
E 4 HOH B 34 534 37 HOH HOH . 
E 4 HOH B 35 535 39 HOH HOH . 
E 4 HOH B 36 536 40 HOH HOH . 
E 4 HOH B 37 537 41 HOH HOH . 
E 4 HOH B 38 538 42 HOH HOH . 
E 4 HOH B 39 539 44 HOH HOH . 
E 4 HOH B 40 540 47 HOH HOH . 
E 4 HOH B 41 541 48 HOH HOH . 
E 4 HOH B 42 542 51 HOH HOH . 
E 4 HOH B 43 543 52 HOH HOH . 
E 4 HOH B 44 544 53 HOH HOH . 
E 4 HOH B 45 545 54 HOH HOH . 
E 4 HOH B 46 546 55 HOH HOH . 
E 4 HOH B 47 547 56 HOH HOH . 
E 4 HOH B 48 548 57 HOH HOH . 
E 4 HOH B 49 549 58 HOH HOH . 
E 4 HOH B 50 550 59 HOH HOH . 
E 4 HOH B 51 551 60 HOH HOH . 
E 4 HOH B 52 552 61 HOH HOH . 
E 4 HOH B 53 553 62 HOH HOH . 
E 4 HOH B 54 554 63 HOH HOH . 
E 4 HOH B 55 555 64 HOH HOH . 
E 4 HOH B 56 556 65 HOH HOH . 
E 4 HOH B 57 557 66 HOH HOH . 
E 4 HOH B 58 558 67 HOH HOH . 
E 4 HOH B 59 559 68 HOH HOH . 
F 4 HOH A 1 701 72 HOH HOH . 
F 4 HOH A 2 702 4 HOH HOH . 
F 4 HOH A 3 703 15 HOH HOH . 
F 4 HOH A 4 704 27 HOH HOH . 
F 4 HOH A 5 705 35 HOH HOH . 
F 4 HOH A 6 706 45 HOH HOH . 
F 4 HOH A 7 707 46 HOH HOH . 
F 4 HOH A 8 708 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -17.302 -8.44 12.718 1 65.89 ? C1 EDO 402 B 1 
HETATM 2 O O1 EDO . . . D 3 -17.002 -7.8 13.974 1 65.89 ? O1 EDO 402 B 1 
HETATM 3 C C2 EDO . . . D 3 -16.078 -9.175 12.202 1 65.89 ? C2 EDO 402 B 1 
HETATM 4 O O2 EDO . . . D 3 -15.157 -9.417 13.287 1 65.89 ? O2 EDO 402 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#