data_4YP0 # _model_server_result.job_id KuUJFniPbfQUK_VjzjUffQ _model_server_result.datetime_utc '2024-12-04 09:43:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 4YP0 # _exptl.entry_id 4YP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.93 _cell.angle_gamma 90 _cell.entry_id 4YP0 _cell.length_a 64.811 _cell.length_b 118.873 _cell.length_c 65.897 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 126.253618 0 65.810855 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 112 n n C1 C2 EDO sing 113 n n C1 H11 EDO sing 114 n n C1 H12 EDO sing 115 n n O1 HO1 EDO sing 116 n n C2 O2 EDO sing 117 n n C2 H21 EDO sing 118 n n C2 H22 EDO sing 119 n n O2 HO2 EDO sing 120 n n # _atom_sites.entry_id 4YP0 _atom_sites.fract_transf_matrix[1][1] 0.01543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00079 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HIS A 1 501 501 HIS HIS . C 3 5IQ A 1 502 1 5IQ 079 . D 4 DMS A 1 503 1 DMS DMS . E 4 DMS A 1 504 2 DMS DMS . F 5 SO4 A 1 505 3 SO4 SO4 . G 5 SO4 A 1 506 6 SO4 SO4 . H 6 EDO A 1 507 7 EDO EDO . I 7 HOH A 1 601 208 HOH HOH . I 7 HOH A 2 602 152 HOH HOH . I 7 HOH A 3 603 45 HOH HOH . I 7 HOH A 4 604 56 HOH HOH . I 7 HOH A 5 605 220 HOH HOH . I 7 HOH A 6 606 223 HOH HOH . I 7 HOH A 7 607 37 HOH HOH . I 7 HOH A 8 608 50 HOH HOH . I 7 HOH A 9 609 59 HOH HOH . I 7 HOH A 10 610 175 HOH HOH . I 7 HOH A 11 611 19 HOH HOH . I 7 HOH A 12 612 207 HOH HOH . I 7 HOH A 13 613 74 HOH HOH . I 7 HOH A 14 614 233 HOH HOH . I 7 HOH A 15 615 173 HOH HOH . I 7 HOH A 16 616 218 HOH HOH . I 7 HOH A 17 617 234 HOH HOH . I 7 HOH A 18 618 47 HOH HOH . I 7 HOH A 19 619 24 HOH HOH . I 7 HOH A 20 620 75 HOH HOH . I 7 HOH A 21 621 191 HOH HOH . I 7 HOH A 22 622 109 HOH HOH . I 7 HOH A 23 623 102 HOH HOH . I 7 HOH A 24 624 104 HOH HOH . I 7 HOH A 25 625 9 HOH HOH . I 7 HOH A 26 626 20 HOH HOH . I 7 HOH A 27 627 32 HOH HOH . I 7 HOH A 28 628 48 HOH HOH . I 7 HOH A 29 629 21 HOH HOH . I 7 HOH A 30 630 106 HOH HOH . I 7 HOH A 31 631 156 HOH HOH . I 7 HOH A 32 632 199 HOH HOH . I 7 HOH A 33 633 225 HOH HOH . I 7 HOH A 34 634 34 HOH HOH . I 7 HOH A 35 635 139 HOH HOH . I 7 HOH A 36 636 51 HOH HOH . I 7 HOH A 37 637 197 HOH HOH . I 7 HOH A 38 638 84 HOH HOH . I 7 HOH A 39 639 88 HOH HOH . I 7 HOH A 40 640 142 HOH HOH . I 7 HOH A 41 641 70 HOH HOH . I 7 HOH A 42 642 33 HOH HOH . I 7 HOH A 43 643 137 HOH HOH . I 7 HOH A 44 644 38 HOH HOH . I 7 HOH A 45 645 188 HOH HOH . I 7 HOH A 46 646 91 HOH HOH . I 7 HOH A 47 647 15 HOH HOH . I 7 HOH A 48 648 94 HOH HOH . I 7 HOH A 49 649 63 HOH HOH . I 7 HOH A 50 650 5 HOH HOH . I 7 HOH A 51 651 184 HOH HOH . I 7 HOH A 52 652 95 HOH HOH . I 7 HOH A 53 653 192 HOH HOH . I 7 HOH A 54 654 44 HOH HOH . I 7 HOH A 55 655 200 HOH HOH . I 7 HOH A 56 656 68 HOH HOH . I 7 HOH A 57 657 144 HOH HOH . I 7 HOH A 58 658 39 HOH HOH . I 7 HOH A 59 659 78 HOH HOH . I 7 HOH A 60 660 217 HOH HOH . I 7 HOH A 61 661 22 HOH HOH . I 7 HOH A 62 662 13 HOH HOH . I 7 HOH A 63 663 17 HOH HOH . I 7 HOH A 64 664 4 HOH HOH . I 7 HOH A 65 665 118 HOH HOH . I 7 HOH A 66 666 190 HOH HOH . I 7 HOH A 67 667 114 HOH HOH . I 7 HOH A 68 668 16 HOH HOH . I 7 HOH A 69 669 55 HOH HOH . I 7 HOH A 70 670 42 HOH HOH . I 7 HOH A 71 671 92 HOH HOH . I 7 HOH A 72 672 67 HOH HOH . I 7 HOH A 73 673 240 HOH HOH . I 7 HOH A 74 674 183 HOH HOH . I 7 HOH A 75 675 141 HOH HOH . I 7 HOH A 76 676 66 HOH HOH . I 7 HOH A 77 677 89 HOH HOH . I 7 HOH A 78 678 6 HOH HOH . I 7 HOH A 79 679 194 HOH HOH . I 7 HOH A 80 680 103 HOH HOH . I 7 HOH A 81 681 72 HOH HOH . I 7 HOH A 82 682 81 HOH HOH . I 7 HOH A 83 683 18 HOH HOH . I 7 HOH A 84 684 213 HOH HOH . I 7 HOH A 85 685 60 HOH HOH . I 7 HOH A 86 686 49 HOH HOH . I 7 HOH A 87 687 3 HOH HOH . I 7 HOH A 88 688 193 HOH HOH . I 7 HOH A 89 689 76 HOH HOH . I 7 HOH A 90 690 35 HOH HOH . I 7 HOH A 91 691 182 HOH HOH . I 7 HOH A 92 692 179 HOH HOH . I 7 HOH A 93 693 14 HOH HOH . I 7 HOH A 94 694 7 HOH HOH . I 7 HOH A 95 695 222 HOH HOH . I 7 HOH A 96 696 229 HOH HOH . I 7 HOH A 97 697 212 HOH HOH . I 7 HOH A 98 698 97 HOH HOH . I 7 HOH A 99 699 224 HOH HOH . I 7 HOH A 100 700 82 HOH HOH . I 7 HOH A 101 701 230 HOH HOH . I 7 HOH A 102 702 196 HOH HOH . I 7 HOH A 103 703 90 HOH HOH . I 7 HOH A 104 704 227 HOH HOH . I 7 HOH A 105 705 40 HOH HOH . I 7 HOH A 106 706 64 HOH HOH . I 7 HOH A 107 707 53 HOH HOH . I 7 HOH A 108 708 62 HOH HOH . I 7 HOH A 109 709 46 HOH HOH . I 7 HOH A 110 710 214 HOH HOH . I 7 HOH A 111 711 138 HOH HOH . I 7 HOH A 112 712 181 HOH HOH . I 7 HOH A 113 713 221 HOH HOH . I 7 HOH A 114 714 216 HOH HOH . I 7 HOH A 115 715 65 HOH HOH . I 7 HOH A 116 716 96 HOH HOH . I 7 HOH A 117 717 204 HOH HOH . I 7 HOH A 118 718 169 HOH HOH . I 7 HOH A 119 719 226 HOH HOH . I 7 HOH A 120 720 195 HOH HOH . I 7 HOH A 121 721 210 HOH HOH . I 7 HOH A 122 722 23 HOH HOH . I 7 HOH A 123 723 80 HOH HOH . I 7 HOH A 124 724 205 HOH HOH . I 7 HOH A 125 725 219 HOH HOH . I 7 HOH A 126 726 1 HOH HOH . I 7 HOH A 127 727 30 HOH HOH . I 7 HOH A 128 728 215 HOH HOH . I 7 HOH A 129 729 77 HOH HOH . I 7 HOH A 130 730 209 HOH HOH . I 7 HOH A 131 731 185 HOH HOH . I 7 HOH A 132 732 10 HOH HOH . I 7 HOH A 133 733 239 HOH HOH . I 7 HOH A 134 734 11 HOH HOH . I 7 HOH A 135 735 26 HOH HOH . I 7 HOH A 136 736 238 HOH HOH . I 7 HOH A 137 737 228 HOH HOH . I 7 HOH A 138 738 231 HOH HOH . I 7 HOH A 139 739 131 HOH HOH . I 7 HOH A 140 740 198 HOH HOH . I 7 HOH A 141 741 186 HOH HOH . I 7 HOH A 142 742 108 HOH HOH . I 7 HOH A 143 743 236 HOH HOH . I 7 HOH A 144 744 116 HOH HOH . I 7 HOH A 145 745 71 HOH HOH . I 7 HOH A 146 746 58 HOH HOH . I 7 HOH A 147 747 232 HOH HOH . I 7 HOH A 148 748 235 HOH HOH . I 7 HOH A 149 749 143 HOH HOH . I 7 HOH A 150 750 128 HOH HOH . I 7 HOH A 151 751 237 HOH HOH . I 7 HOH A 152 752 130 HOH HOH . I 7 HOH A 153 753 129 HOH HOH . I 7 HOH A 154 754 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 6 71.215 20.393 42.223 1 59.22 ? C1 EDO 507 A 1 HETATM 2 O O1 EDO . . . H 6 71.954 19.679 41.228 1 61.82 ? O1 EDO 507 A 1 HETATM 3 C C2 EDO . . . H 6 69.83 20.661 41.667 1 56.01 ? C2 EDO 507 A 1 HETATM 4 O O2 EDO . . . H 6 69.942 20.767 40.251 1 56.57 ? O2 EDO 507 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #