data_4YP2 # _model_server_result.job_id 4oy8iYRumEQOQRttaMdXEA _model_server_result.datetime_utc '2024-12-20 09:46:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4YP2 # _exptl.entry_id 4YP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.125 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YP2 _cell.length_a 130.1 _cell.length_b 130.1 _cell.length_c 37.57 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.445 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H6 N2 O' _chem_comp.formula_weight 122.125 _chem_comp.id NCA _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NCA doub 254 n y N1 C6 NCA sing 255 n y C2 C3 NCA sing 256 n y C2 H2 NCA sing 257 n n C3 C4 NCA doub 258 n y C3 C7 NCA sing 259 n n C4 C5 NCA sing 260 n y C4 H4 NCA sing 261 n n C5 C6 NCA doub 262 n y C5 H5 NCA sing 263 n n C6 H6 NCA sing 264 n n C7 O7 NCA doub 265 n n C7 N7 NCA sing 266 n n N7 HN71 NCA sing 267 n n N7 HN72 NCA sing 268 n n # _atom_sites.entry_id 4YP2 _atom_sites.fract_transf_matrix[1][1] 0.007686 _atom_sites.fract_transf_matrix[1][2] 0.004438 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG B 1 301 301 NAG NAG . C 3 NCA B 1 302 1 NCA NIC . D 4 HOH B 1 401 214 HOH HOH . D 4 HOH B 2 402 241 HOH HOH . D 4 HOH B 3 403 138 HOH HOH . D 4 HOH B 4 404 221 HOH HOH . D 4 HOH B 5 405 86 HOH HOH . D 4 HOH B 6 406 83 HOH HOH . D 4 HOH B 7 407 217 HOH HOH . D 4 HOH B 8 408 223 HOH HOH . D 4 HOH B 9 409 177 HOH HOH . D 4 HOH B 10 410 263 HOH HOH . D 4 HOH B 11 411 160 HOH HOH . D 4 HOH B 12 412 53 HOH HOH . D 4 HOH B 13 413 244 HOH HOH . D 4 HOH B 14 414 28 HOH HOH . D 4 HOH B 15 415 149 HOH HOH . D 4 HOH B 16 416 124 HOH HOH . D 4 HOH B 17 417 184 HOH HOH . D 4 HOH B 18 418 146 HOH HOH . D 4 HOH B 19 419 209 HOH HOH . D 4 HOH B 20 420 220 HOH HOH . D 4 HOH B 21 421 71 HOH HOH . D 4 HOH B 22 422 106 HOH HOH . D 4 HOH B 23 423 89 HOH HOH . D 4 HOH B 24 424 67 HOH HOH . D 4 HOH B 25 425 77 HOH HOH . D 4 HOH B 26 426 69 HOH HOH . D 4 HOH B 27 427 132 HOH HOH . D 4 HOH B 28 428 44 HOH HOH . D 4 HOH B 29 429 73 HOH HOH . D 4 HOH B 30 430 14 HOH HOH . D 4 HOH B 31 431 46 HOH HOH . D 4 HOH B 32 432 22 HOH HOH . D 4 HOH B 33 433 2 HOH HOH . D 4 HOH B 34 434 228 HOH HOH . D 4 HOH B 35 435 17 HOH HOH . D 4 HOH B 36 436 29 HOH HOH . D 4 HOH B 37 437 131 HOH HOH . D 4 HOH B 38 438 62 HOH HOH . D 4 HOH B 39 439 162 HOH HOH . D 4 HOH B 40 440 4 HOH HOH . D 4 HOH B 41 441 74 HOH HOH . D 4 HOH B 42 442 153 HOH HOH . D 4 HOH B 43 443 63 HOH HOH . D 4 HOH B 44 444 128 HOH HOH . D 4 HOH B 45 445 240 HOH HOH . D 4 HOH B 46 446 120 HOH HOH . D 4 HOH B 47 447 12 HOH HOH . D 4 HOH B 48 448 9 HOH HOH . D 4 HOH B 49 449 141 HOH HOH . D 4 HOH B 50 450 215 HOH HOH . D 4 HOH B 51 451 6 HOH HOH . D 4 HOH B 52 452 235 HOH HOH . D 4 HOH B 53 453 1 HOH HOH . D 4 HOH B 54 454 21 HOH HOH . D 4 HOH B 55 455 65 HOH HOH . D 4 HOH B 56 456 165 HOH HOH . D 4 HOH B 57 457 42 HOH HOH . D 4 HOH B 58 458 154 HOH HOH . D 4 HOH B 59 459 32 HOH HOH . D 4 HOH B 60 460 222 HOH HOH . D 4 HOH B 61 461 50 HOH HOH . D 4 HOH B 62 462 139 HOH HOH . D 4 HOH B 63 463 150 HOH HOH . D 4 HOH B 64 464 19 HOH HOH . D 4 HOH B 65 465 41 HOH HOH . D 4 HOH B 66 466 49 HOH HOH . D 4 HOH B 67 467 259 HOH HOH . D 4 HOH B 68 468 36 HOH HOH . D 4 HOH B 69 469 52 HOH HOH . D 4 HOH B 70 470 13 HOH HOH . D 4 HOH B 71 471 48 HOH HOH . D 4 HOH B 72 472 260 HOH HOH . D 4 HOH B 73 473 175 HOH HOH . D 4 HOH B 74 474 107 HOH HOH . D 4 HOH B 75 475 137 HOH HOH . D 4 HOH B 76 476 140 HOH HOH . D 4 HOH B 77 477 133 HOH HOH . D 4 HOH B 78 478 145 HOH HOH . D 4 HOH B 79 479 204 HOH HOH . D 4 HOH B 80 480 155 HOH HOH . D 4 HOH B 81 481 81 HOH HOH . D 4 HOH B 82 482 119 HOH HOH . D 4 HOH B 83 483 147 HOH HOH . D 4 HOH B 84 484 80 HOH HOH . D 4 HOH B 85 485 43 HOH HOH . D 4 HOH B 86 486 247 HOH HOH . D 4 HOH B 87 487 109 HOH HOH . D 4 HOH B 88 488 15 HOH HOH . D 4 HOH B 89 489 151 HOH HOH . D 4 HOH B 90 490 167 HOH HOH . D 4 HOH B 91 491 59 HOH HOH . D 4 HOH B 92 492 16 HOH HOH . D 4 HOH B 93 493 225 HOH HOH . D 4 HOH B 94 494 174 HOH HOH . D 4 HOH B 95 495 57 HOH HOH . D 4 HOH B 96 496 18 HOH HOH . D 4 HOH B 97 497 84 HOH HOH . D 4 HOH B 98 498 96 HOH HOH . D 4 HOH B 99 499 171 HOH HOH . D 4 HOH B 100 500 195 HOH HOH . D 4 HOH B 101 501 254 HOH HOH . D 4 HOH B 102 502 24 HOH HOH . D 4 HOH B 103 503 78 HOH HOH . D 4 HOH B 104 504 111 HOH HOH . D 4 HOH B 105 505 30 HOH HOH . D 4 HOH B 106 506 31 HOH HOH . D 4 HOH B 107 507 262 HOH HOH . D 4 HOH B 108 508 108 HOH HOH . D 4 HOH B 109 509 93 HOH HOH . D 4 HOH B 110 510 75 HOH HOH . D 4 HOH B 111 511 79 HOH HOH . D 4 HOH B 112 512 101 HOH HOH . D 4 HOH B 113 513 161 HOH HOH . D 4 HOH B 114 514 91 HOH HOH . D 4 HOH B 115 515 144 HOH HOH . D 4 HOH B 116 516 92 HOH HOH . D 4 HOH B 117 517 40 HOH HOH . D 4 HOH B 118 518 110 HOH HOH . D 4 HOH B 119 519 72 HOH HOH . D 4 HOH B 120 520 239 HOH HOH . D 4 HOH B 121 521 230 HOH HOH . D 4 HOH B 122 522 94 HOH HOH . D 4 HOH B 123 523 97 HOH HOH . D 4 HOH B 124 524 47 HOH HOH . D 4 HOH B 125 525 105 HOH HOH . D 4 HOH B 126 526 185 HOH HOH . D 4 HOH B 127 527 82 HOH HOH . D 4 HOH B 128 528 60 HOH HOH . D 4 HOH B 129 529 33 HOH HOH . D 4 HOH B 130 530 56 HOH HOH . D 4 HOH B 131 531 8 HOH HOH . D 4 HOH B 132 532 76 HOH HOH . D 4 HOH B 133 533 173 HOH HOH . D 4 HOH B 134 534 26 HOH HOH . D 4 HOH B 135 535 157 HOH HOH . D 4 HOH B 136 536 135 HOH HOH . D 4 HOH B 137 537 61 HOH HOH . D 4 HOH B 138 538 200 HOH HOH . D 4 HOH B 139 539 35 HOH HOH . D 4 HOH B 140 540 45 HOH HOH . D 4 HOH B 141 541 224 HOH HOH . D 4 HOH B 142 542 190 HOH HOH . D 4 HOH B 143 543 252 HOH HOH . D 4 HOH B 144 544 7 HOH HOH . D 4 HOH B 145 545 66 HOH HOH . D 4 HOH B 146 546 54 HOH HOH . D 4 HOH B 147 547 208 HOH HOH . D 4 HOH B 148 548 199 HOH HOH . D 4 HOH B 149 549 25 HOH HOH . D 4 HOH B 150 550 189 HOH HOH . D 4 HOH B 151 551 5 HOH HOH . D 4 HOH B 152 552 102 HOH HOH . D 4 HOH B 153 553 129 HOH HOH . D 4 HOH B 154 554 213 HOH HOH . D 4 HOH B 155 555 218 HOH HOH . D 4 HOH B 156 556 212 HOH HOH . D 4 HOH B 157 557 68 HOH HOH . D 4 HOH B 158 558 243 HOH HOH . D 4 HOH B 159 559 37 HOH HOH . D 4 HOH B 160 560 90 HOH HOH . D 4 HOH B 161 561 3 HOH HOH . D 4 HOH B 162 562 98 HOH HOH . D 4 HOH B 163 563 20 HOH HOH . D 4 HOH B 164 564 38 HOH HOH . D 4 HOH B 165 565 211 HOH HOH . D 4 HOH B 166 566 115 HOH HOH . D 4 HOH B 167 567 187 HOH HOH . D 4 HOH B 168 568 39 HOH HOH . D 4 HOH B 169 569 148 HOH HOH . D 4 HOH B 170 570 55 HOH HOH . D 4 HOH B 171 571 34 HOH HOH . D 4 HOH B 172 572 51 HOH HOH . D 4 HOH B 173 573 183 HOH HOH . D 4 HOH B 174 574 121 HOH HOH . D 4 HOH B 175 575 143 HOH HOH . D 4 HOH B 176 576 10 HOH HOH . D 4 HOH B 177 577 114 HOH HOH . D 4 HOH B 178 578 87 HOH HOH . D 4 HOH B 179 579 270 HOH HOH . D 4 HOH B 180 580 210 HOH HOH . D 4 HOH B 181 581 186 HOH HOH . D 4 HOH B 182 582 27 HOH HOH . D 4 HOH B 183 583 233 HOH HOH . D 4 HOH B 184 584 104 HOH HOH . D 4 HOH B 185 585 170 HOH HOH . D 4 HOH B 186 586 136 HOH HOH . D 4 HOH B 187 587 250 HOH HOH . D 4 HOH B 188 588 23 HOH HOH . D 4 HOH B 189 589 123 HOH HOH . D 4 HOH B 190 590 172 HOH HOH . D 4 HOH B 191 591 159 HOH HOH . D 4 HOH B 192 592 258 HOH HOH . D 4 HOH B 193 593 238 HOH HOH . D 4 HOH B 194 594 201 HOH HOH . D 4 HOH B 195 595 70 HOH HOH . D 4 HOH B 196 596 234 HOH HOH . D 4 HOH B 197 597 194 HOH HOH . D 4 HOH B 198 598 264 HOH HOH . D 4 HOH B 199 599 207 HOH HOH . D 4 HOH B 200 600 58 HOH HOH . D 4 HOH B 201 601 176 HOH HOH . D 4 HOH B 202 602 180 HOH HOH . D 4 HOH B 203 603 163 HOH HOH . D 4 HOH B 204 604 130 HOH HOH . D 4 HOH B 205 605 268 HOH HOH . D 4 HOH B 206 606 227 HOH HOH . D 4 HOH B 207 607 251 HOH HOH . D 4 HOH B 208 608 95 HOH HOH . D 4 HOH B 209 609 166 HOH HOH . D 4 HOH B 210 610 116 HOH HOH . D 4 HOH B 211 611 248 HOH HOH . D 4 HOH B 212 612 158 HOH HOH . D 4 HOH B 213 613 117 HOH HOH . D 4 HOH B 214 614 113 HOH HOH . D 4 HOH B 215 615 178 HOH HOH . D 4 HOH B 216 616 181 HOH HOH . D 4 HOH B 217 617 231 HOH HOH . D 4 HOH B 218 618 156 HOH HOH . D 4 HOH B 219 619 232 HOH HOH . D 4 HOH B 220 620 205 HOH HOH . D 4 HOH B 221 621 246 HOH HOH . D 4 HOH B 222 622 193 HOH HOH . D 4 HOH B 223 623 253 HOH HOH . D 4 HOH B 224 624 266 HOH HOH . D 4 HOH B 225 625 103 HOH HOH . D 4 HOH B 226 626 216 HOH HOH . D 4 HOH B 227 627 118 HOH HOH . D 4 HOH B 228 628 126 HOH HOH . D 4 HOH B 229 629 267 HOH HOH . D 4 HOH B 230 630 196 HOH HOH . D 4 HOH B 231 631 64 HOH HOH . D 4 HOH B 232 632 272 HOH HOH . D 4 HOH B 233 633 191 HOH HOH . D 4 HOH B 234 634 182 HOH HOH . D 4 HOH B 235 635 236 HOH HOH . D 4 HOH B 236 636 188 HOH HOH . D 4 HOH B 237 637 245 HOH HOH . D 4 HOH B 238 638 134 HOH HOH . D 4 HOH B 239 639 202 HOH HOH . D 4 HOH B 240 640 125 HOH HOH . D 4 HOH B 241 641 197 HOH HOH . D 4 HOH B 242 642 203 HOH HOH . D 4 HOH B 243 643 256 HOH HOH . D 4 HOH B 244 644 249 HOH HOH . D 4 HOH B 245 645 11 HOH HOH . D 4 HOH B 246 646 242 HOH HOH . D 4 HOH B 247 647 85 HOH HOH . D 4 HOH B 248 648 169 HOH HOH . D 4 HOH B 249 649 226 HOH HOH . D 4 HOH B 250 650 112 HOH HOH . D 4 HOH B 251 651 219 HOH HOH . D 4 HOH B 252 652 88 HOH HOH . D 4 HOH B 253 653 179 HOH HOH . D 4 HOH B 254 654 257 HOH HOH . D 4 HOH B 255 655 269 HOH HOH . D 4 HOH B 256 656 229 HOH HOH . D 4 HOH B 257 657 164 HOH HOH . D 4 HOH B 258 658 261 HOH HOH . D 4 HOH B 259 659 127 HOH HOH . D 4 HOH B 260 660 100 HOH HOH . D 4 HOH B 261 661 198 HOH HOH . D 4 HOH B 262 662 237 HOH HOH . D 4 HOH B 263 663 265 HOH HOH . D 4 HOH B 264 664 271 HOH HOH . D 4 HOH B 265 665 255 HOH HOH . D 4 HOH B 266 666 99 HOH HOH . D 4 HOH B 267 667 168 HOH HOH . D 4 HOH B 268 668 142 HOH HOH . D 4 HOH B 269 669 122 HOH HOH . D 4 HOH B 270 670 206 HOH HOH . D 4 HOH B 271 671 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NCA . . . C 3 -18.123 14.859 13.475 1 15.19 ? N1 NCA 302 B 1 HETATM 2 C C2 NCA . . . C 3 -17.463 15.191 14.586 1 14.52 ? C2 NCA 302 B 1 HETATM 3 C C3 NCA . . . C 3 -16.069 15.241 14.645 1 14.46 ? C3 NCA 302 B 1 HETATM 4 C C4 NCA . . . C 3 -15.36 14.933 13.501 1 16.29 ? C4 NCA 302 B 1 HETATM 5 C C5 NCA . . . C 3 -16.042 14.585 12.349 1 15.74 ? C5 NCA 302 B 1 HETATM 6 C C6 NCA . . . C 3 -17.418 14.588 12.372 1 15.86 ? C6 NCA 302 B 1 HETATM 7 C C7 NCA . . . C 3 -15.403 15.585 15.885 1 15.1 ? C7 NCA 302 B 1 HETATM 8 O O7 NCA . . . C 3 -15.929 15.371 16.949 1 16.39 ? O7 NCA 302 B 1 HETATM 9 N N7 NCA . . . C 3 -14.169 16.163 15.849 1 16.09 ? N7 NCA 302 B 1 HETATM 10 H H2 NCA . . . C 3 -18.118 15.413 15.437 1 17.43 ? H2 NCA 302 B 1 HETATM 11 H H4 NCA . . . C 3 -14.266 14.951 13.505 1 19.55 ? H4 NCA 302 B 1 HETATM 12 H H5 NCA . . . C 3 -15.502 14.351 11.43 1 18.88 ? H5 NCA 302 B 1 HETATM 13 H H6 NCA . . . C 3 -18.019 14.321 11.495 1 19.03 ? H6 NCA 302 B 1 HETATM 14 H HN71 NCA . . . C 3 -13.717 16.397 16.713 1 19.31 ? HN71 NCA 302 B 1 HETATM 15 H HN72 NCA . . . C 3 -13.681 16.367 15.009 1 19.31 ? HN72 NCA 302 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #