data_4YP9 # _model_server_result.job_id y76YA-UBM5Iy07kNpnWeWw _model_server_result.datetime_utc '2024-12-26 18:50:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4YP9 # _exptl.entry_id 4YP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YP9 _cell.length_a 104.732 _cell.length_b 104.732 _cell.length_c 69.532 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 197 A ASP 217 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc2 A OD2 ASP 197 A ASP 217 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 C MG MG . A MG 401 1_555 H O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc4 C MG MG . A MG 401 1_555 H O HOH . A HOH 525 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc5 C MG MG . A MG 401 1_555 H O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc6 C MG MG . A MG 401 1_555 H O HOH . A HOH 534 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc7 D MG MG . A MG 402 1_555 H O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc8 D MG MG . A MG 402 1_555 H O HOH . A HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc9 D MG MG . A MG 402 1_555 H O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc10 D MG MG . A MG 402 1_555 H O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc11 B OD1 ASP 197 B ASP 217 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc12 B OD2 ASP 197 B ASP 217 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc13 F CA CA . B CA 401 1_555 I O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc14 F CA CA . B CA 401 1_555 I O HOH . B HOH 528 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc15 F CA CA . B CA 401 1_555 I O HOH . B HOH 546 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YP9 _atom_sites.fract_transf_matrix[1][1] 0.009548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 1 MG MG . D 2 MG A 1 402 1 MG MG . E 3 A1B A 1 403 1 A1B A1B . F 4 CA B 1 401 1 CA CA . G 3 A1B B 1 402 1 A1B A1B . H 5 HOH A 1 501 38 HOH HOH . H 5 HOH A 2 502 29 HOH HOH . H 5 HOH A 3 503 58 HOH HOH . H 5 HOH A 4 504 31 HOH HOH . H 5 HOH A 5 505 12 HOH HOH . H 5 HOH A 6 506 8 HOH HOH . H 5 HOH A 7 507 91 HOH HOH . H 5 HOH A 8 508 18 HOH HOH . H 5 HOH A 9 509 135 HOH HOH . H 5 HOH A 10 510 81 HOH HOH . H 5 HOH A 11 511 75 HOH HOH . H 5 HOH A 12 512 9 HOH HOH . H 5 HOH A 13 513 10 HOH HOH . H 5 HOH A 14 514 98 HOH HOH . H 5 HOH A 15 515 37 HOH HOH . H 5 HOH A 16 516 4 HOH HOH . H 5 HOH A 17 517 65 HOH HOH . H 5 HOH A 18 518 71 HOH HOH . H 5 HOH A 19 519 26 HOH HOH . H 5 HOH A 20 520 83 HOH HOH . H 5 HOH A 21 521 104 HOH HOH . H 5 HOH A 22 522 11 HOH HOH . H 5 HOH A 23 523 23 HOH HOH . H 5 HOH A 24 524 92 HOH HOH . H 5 HOH A 25 525 62 HOH HOH . H 5 HOH A 26 526 1 HOH HOH . H 5 HOH A 27 527 7 HOH HOH . H 5 HOH A 28 528 68 HOH HOH . H 5 HOH A 29 529 64 HOH HOH . H 5 HOH A 30 530 22 HOH HOH . H 5 HOH A 31 531 70 HOH HOH . H 5 HOH A 32 532 110 HOH HOH . H 5 HOH A 33 533 76 HOH HOH . H 5 HOH A 34 534 63 HOH HOH . H 5 HOH A 35 535 129 HOH HOH . H 5 HOH A 36 536 73 HOH HOH . H 5 HOH A 37 537 80 HOH HOH . H 5 HOH A 38 538 51 HOH HOH . H 5 HOH A 39 539 97 HOH HOH . H 5 HOH A 40 540 34 HOH HOH . H 5 HOH A 41 541 2 HOH HOH . H 5 HOH A 42 542 54 HOH HOH . H 5 HOH A 43 543 50 HOH HOH . H 5 HOH A 44 544 101 HOH HOH . H 5 HOH A 45 545 85 HOH HOH . H 5 HOH A 46 546 5 HOH HOH . H 5 HOH A 47 547 124 HOH HOH . H 5 HOH A 48 548 128 HOH HOH . H 5 HOH A 49 549 139 HOH HOH . H 5 HOH A 50 550 137 HOH HOH . H 5 HOH A 51 551 121 HOH HOH . H 5 HOH A 52 552 30 HOH HOH . H 5 HOH A 53 553 66 HOH HOH . H 5 HOH A 54 554 3 HOH HOH . H 5 HOH A 55 555 27 HOH HOH . H 5 HOH A 56 556 112 HOH HOH . H 5 HOH A 57 557 96 HOH HOH . H 5 HOH A 58 558 28 HOH HOH . H 5 HOH A 59 559 24 HOH HOH . H 5 HOH A 60 560 111 HOH HOH . H 5 HOH A 61 561 52 HOH HOH . H 5 HOH A 62 562 125 HOH HOH . H 5 HOH A 63 563 33 HOH HOH . H 5 HOH A 64 564 35 HOH HOH . H 5 HOH A 65 565 113 HOH HOH . H 5 HOH A 66 566 6 HOH HOH . H 5 HOH A 67 567 127 HOH HOH . H 5 HOH A 68 568 130 HOH HOH . H 5 HOH A 69 569 89 HOH HOH . H 5 HOH A 70 570 109 HOH HOH . H 5 HOH A 71 571 69 HOH HOH . H 5 HOH A 72 572 36 HOH HOH . H 5 HOH A 73 573 32 HOH HOH . H 5 HOH A 74 574 74 HOH HOH . H 5 HOH A 75 575 108 HOH HOH . H 5 HOH A 76 576 115 HOH HOH . H 5 HOH A 77 577 93 HOH HOH . H 5 HOH A 78 578 126 HOH HOH . H 5 HOH A 79 579 67 HOH HOH . H 5 HOH A 80 580 142 HOH HOH . H 5 HOH A 81 581 140 HOH HOH . H 5 HOH A 82 582 132 HOH HOH . H 5 HOH A 83 583 60 HOH HOH . I 5 HOH B 1 501 61 HOH HOH . I 5 HOH B 2 502 117 HOH HOH . I 5 HOH B 3 503 84 HOH HOH . I 5 HOH B 4 504 143 HOH HOH . I 5 HOH B 5 505 99 HOH HOH . I 5 HOH B 6 506 40 HOH HOH . I 5 HOH B 7 507 59 HOH HOH . I 5 HOH B 8 508 141 HOH HOH . I 5 HOH B 9 509 17 HOH HOH . I 5 HOH B 10 510 90 HOH HOH . I 5 HOH B 11 511 16 HOH HOH . I 5 HOH B 12 512 95 HOH HOH . I 5 HOH B 13 513 15 HOH HOH . I 5 HOH B 14 514 19 HOH HOH . I 5 HOH B 15 515 78 HOH HOH . I 5 HOH B 16 516 103 HOH HOH . I 5 HOH B 17 517 114 HOH HOH . I 5 HOH B 18 518 48 HOH HOH . I 5 HOH B 19 519 39 HOH HOH . I 5 HOH B 20 520 107 HOH HOH . I 5 HOH B 21 521 119 HOH HOH . I 5 HOH B 22 522 47 HOH HOH . I 5 HOH B 23 523 86 HOH HOH . I 5 HOH B 24 524 87 HOH HOH . I 5 HOH B 25 525 79 HOH HOH . I 5 HOH B 26 526 131 HOH HOH . I 5 HOH B 27 527 105 HOH HOH . I 5 HOH B 28 528 41 HOH HOH . I 5 HOH B 29 529 20 HOH HOH . I 5 HOH B 30 530 88 HOH HOH . I 5 HOH B 31 531 53 HOH HOH . I 5 HOH B 32 532 100 HOH HOH . I 5 HOH B 33 533 49 HOH HOH . I 5 HOH B 34 534 118 HOH HOH . I 5 HOH B 35 535 72 HOH HOH . I 5 HOH B 36 536 14 HOH HOH . I 5 HOH B 37 537 43 HOH HOH . I 5 HOH B 38 538 106 HOH HOH . I 5 HOH B 39 539 102 HOH HOH . I 5 HOH B 40 540 120 HOH HOH . I 5 HOH B 41 541 77 HOH HOH . I 5 HOH B 42 542 45 HOH HOH . I 5 HOH B 43 543 13 HOH HOH . I 5 HOH B 44 544 57 HOH HOH . I 5 HOH B 45 545 25 HOH HOH . I 5 HOH B 46 546 42 HOH HOH . I 5 HOH B 47 547 123 HOH HOH . I 5 HOH B 48 548 94 HOH HOH . I 5 HOH B 49 549 116 HOH HOH . I 5 HOH B 50 550 122 HOH HOH . I 5 HOH B 51 551 21 HOH HOH . I 5 HOH B 52 552 134 HOH HOH . I 5 HOH B 53 553 44 HOH HOH . I 5 HOH B 54 554 55 HOH HOH . I 5 HOH B 55 555 136 HOH HOH . I 5 HOH B 56 556 56 HOH HOH . I 5 HOH B 57 557 46 HOH HOH . I 5 HOH B 58 558 133 HOH HOH . I 5 HOH B 59 559 138 HOH HOH . I 5 HOH B 60 560 82 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 36.553 _atom_site.Cartn_y 53.587 _atom_site.Cartn_z 0.447 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #