data_4YPW # _model_server_result.job_id -IdNnt4nO7Tn09fmXvsFAA _model_server_result.datetime_utc '2024-11-05 00:39:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ypw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YPW # _exptl.entry_id 4YPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 227.262 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(benzylamino)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YPW _cell.length_a 92.892 _cell.length_b 92.892 _cell.length_c 178.097 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H13 N3 O' _chem_comp.formula_weight 227.262 _chem_comp.id 4FD _chem_comp.mon_nstd_flag . _chem_comp.name 6-(benzylamino)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 4FD doub 1 n y C13 C14 4FD sing 2 n y C12 C11 4FD sing 3 n y C14 C15 4FD doub 4 n y C11 C10 4FD doub 5 n y C15 C10 4FD sing 6 n y C10 C9 4FD sing 7 n n C9 N8 4FD sing 8 n n N8 C7 4FD sing 9 n n C6 C7 4FD doub 10 n y C6 C5 4FD sing 11 n y C7 N16 4FD sing 12 n y C5 C4 4FD doub 13 n y N16 C17 4FD doub 14 n y C4 C17 4FD sing 15 n y C4 C2 4FD sing 16 n n C2 O3 4FD doub 17 n n C2 N1 4FD sing 18 n n N1 H1 4FD sing 19 n n N1 H2 4FD sing 20 n n C5 H3 4FD sing 21 n n C6 H4 4FD sing 22 n n C13 H5 4FD sing 23 n n C15 H6 4FD sing 24 n n C17 H7 4FD sing 25 n n C12 H8 4FD sing 26 n n C14 H9 4FD sing 27 n n C11 H10 4FD sing 28 n n C9 H11 4FD sing 29 n n C9 H12 4FD sing 30 n n N8 H13 4FD sing 31 n n # _atom_sites.entry_id 4YPW _atom_sites.fract_transf_matrix[1][1] 0.010765 _atom_sites.fract_transf_matrix[1][2] 0.006215 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4FD A 1 301 1 4FD LIG . C 3 HOH A 1 401 20 HOH HOH . C 3 HOH A 2 402 15 HOH HOH . C 3 HOH A 3 403 16 HOH HOH . C 3 HOH A 4 404 5 HOH HOH . C 3 HOH A 5 405 29 HOH HOH . C 3 HOH A 6 406 14 HOH HOH . C 3 HOH A 7 407 2 HOH HOH . C 3 HOH A 8 408 13 HOH HOH . C 3 HOH A 9 409 10 HOH HOH . C 3 HOH A 10 410 8 HOH HOH . C 3 HOH A 11 411 9 HOH HOH . C 3 HOH A 12 412 3 HOH HOH . C 3 HOH A 13 413 18 HOH HOH . C 3 HOH A 14 414 7 HOH HOH . C 3 HOH A 15 415 11 HOH HOH . C 3 HOH A 16 416 17 HOH HOH . C 3 HOH A 17 417 21 HOH HOH . C 3 HOH A 18 418 1 HOH HOH . C 3 HOH A 19 419 27 HOH HOH . C 3 HOH A 20 420 28 HOH HOH . C 3 HOH A 21 421 4 HOH HOH . C 3 HOH A 22 422 12 HOH HOH . C 3 HOH A 23 423 25 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 22 HOH HOH . C 3 HOH A 26 426 19 HOH HOH . C 3 HOH A 27 427 31 HOH HOH . C 3 HOH A 28 428 30 HOH HOH . C 3 HOH A 29 429 6 HOH HOH . C 3 HOH A 30 430 26 HOH HOH . C 3 HOH A 31 431 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 4FD . . . B 2 -21.943 42.89 -6.278 1 34.65 ? N1 4FD 301 A 1 HETATM 2 C C4 4FD . . . B 2 -20.938 41.107 -7.442 1 48.03 ? C4 4FD 301 A 1 HETATM 3 C C5 4FD . . . B 2 -21.086 40.127 -8.39 1 46.44 ? C5 4FD 301 A 1 HETATM 4 C C6 4FD . . . B 2 -19.942 39.701 -9.022 1 48.78 ? C6 4FD 301 A 1 HETATM 5 C C7 4FD . . . B 2 -18.727 40.259 -8.69 1 49.24 ? C7 4FD 301 A 1 HETATM 6 C C10 4FD . . . B 2 -18.172 40.116 -11.643 1 43.4 ? C10 4FD 301 A 1 HETATM 7 C C13 4FD . . . B 2 -18.433 41.988 -13.637 1 41.1 ? C13 4FD 301 A 1 HETATM 8 C C15 4FD . . . B 2 -17.159 41.012 -11.881 1 41.27 ? C15 4FD 301 A 1 HETATM 9 C C17 4FD . . . B 2 -19.698 41.619 -7.158 1 56.29 ? C17 4FD 301 A 1 HETATM 10 C C12 4FD . . . B 2 -19.447 41.093 -13.399 1 35.74 ? C12 4FD 301 A 1 HETATM 11 C C14 4FD . . . B 2 -17.288 41.949 -12.878 1 41.01 ? C14 4FD 301 A 1 HETATM 12 C C11 4FD . . . B 2 -19.317 40.157 -12.402 1 47.31 ? C11 4FD 301 A 1 HETATM 13 C C2 4FD . . . B 2 -22.107 41.608 -6.728 1 41.92 ? C2 4FD 301 A 1 HETATM 14 C C9 4FD . . . B 2 -18.026 39.109 -10.562 1 40.64 ? C9 4FD 301 A 1 HETATM 15 N N16 4FD . . . B 2 -18.583 41.213 -7.765 1 57.71 ? N16 4FD 301 A 1 HETATM 16 N N8 4FD . . . B 2 -17.593 39.789 -9.361 1 37.87 ? N8 4FD 301 A 1 HETATM 17 O O3 4FD . . . B 2 -23.09 40.896 -6.586 1 41.95 ? O3 4FD 301 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #