data_4YPY # _model_server_result.job_id hD92HvjxW0SbBAxiPbMMhQ _model_server_result.datetime_utc '2024-10-20 00:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ypy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YPY # _exptl.entry_id 4YPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 145.161 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(1H-imidazol-5-yl)pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YPY _cell.length_a 93.843 _cell.length_b 93.843 _cell.length_c 178.18 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H7 N3' _chem_comp.formula_weight 145.161 _chem_comp.id 4F9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(1H-imidazol-5-yl)pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 4F9 sing 1 n y N1 C 4F9 doub 2 n y C2 C1 4F9 doub 3 n y C N 4F9 sing 4 n y C1 N 4F9 sing 5 n y C1 C3 4F9 sing 6 n n C7 C3 4F9 doub 7 n y C7 C6 4F9 sing 8 n y C3 C4 4F9 sing 9 n y C6 N2 4F9 doub 10 n y C4 C5 4F9 doub 11 n y N2 C5 4F9 sing 12 n y C7 H1 4F9 sing 13 n n C4 H2 4F9 sing 14 n n C6 H3 4F9 sing 15 n n C5 H4 4F9 sing 16 n n C2 H5 4F9 sing 17 n n C H6 4F9 sing 18 n n N H7 4F9 sing 19 n n # _atom_sites.entry_id 4YPY _atom_sites.fract_transf_matrix[1][1] 0.010656 _atom_sites.fract_transf_matrix[1][2] 0.006152 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4F9 A 1 301 1 4F9 UNL . C 3 FLC A 1 302 1 FLC FLC . D 4 HOH A 1 401 28 HOH HOH . D 4 HOH A 2 402 82 HOH HOH . D 4 HOH A 3 403 90 HOH HOH . D 4 HOH A 4 404 67 HOH HOH . D 4 HOH A 5 405 61 HOH HOH . D 4 HOH A 6 406 74 HOH HOH . D 4 HOH A 7 407 35 HOH HOH . D 4 HOH A 8 408 126 HOH HOH . D 4 HOH A 9 409 47 HOH HOH . D 4 HOH A 10 410 43 HOH HOH . D 4 HOH A 11 411 172 HOH HOH . D 4 HOH A 12 412 132 HOH HOH . D 4 HOH A 13 413 133 HOH HOH . D 4 HOH A 14 414 77 HOH HOH . D 4 HOH A 15 415 125 HOH HOH . D 4 HOH A 16 416 88 HOH HOH . D 4 HOH A 17 417 7 HOH HOH . D 4 HOH A 18 418 48 HOH HOH . D 4 HOH A 19 419 68 HOH HOH . D 4 HOH A 20 420 109 HOH HOH . D 4 HOH A 21 421 3 HOH HOH . D 4 HOH A 22 422 123 HOH HOH . D 4 HOH A 23 423 154 HOH HOH . D 4 HOH A 24 424 122 HOH HOH . D 4 HOH A 25 425 129 HOH HOH . D 4 HOH A 26 426 128 HOH HOH . D 4 HOH A 27 427 64 HOH HOH . D 4 HOH A 28 428 111 HOH HOH . D 4 HOH A 29 429 10 HOH HOH . D 4 HOH A 30 430 39 HOH HOH . D 4 HOH A 31 431 118 HOH HOH . D 4 HOH A 32 432 119 HOH HOH . D 4 HOH A 33 433 50 HOH HOH . D 4 HOH A 34 434 45 HOH HOH . D 4 HOH A 35 435 81 HOH HOH . D 4 HOH A 36 436 58 HOH HOH . D 4 HOH A 37 437 29 HOH HOH . D 4 HOH A 38 438 17 HOH HOH . D 4 HOH A 39 439 86 HOH HOH . D 4 HOH A 40 440 162 HOH HOH . D 4 HOH A 41 441 121 HOH HOH . D 4 HOH A 42 442 8 HOH HOH . D 4 HOH A 43 443 124 HOH HOH . D 4 HOH A 44 444 9 HOH HOH . D 4 HOH A 45 445 92 HOH HOH . D 4 HOH A 46 446 112 HOH HOH . D 4 HOH A 47 447 19 HOH HOH . D 4 HOH A 48 448 20 HOH HOH . D 4 HOH A 49 449 14 HOH HOH . D 4 HOH A 50 450 46 HOH HOH . D 4 HOH A 51 451 95 HOH HOH . D 4 HOH A 52 452 174 HOH HOH . D 4 HOH A 53 453 143 HOH HOH . D 4 HOH A 54 454 157 HOH HOH . D 4 HOH A 55 455 139 HOH HOH . D 4 HOH A 56 456 182 HOH HOH . D 4 HOH A 57 457 11 HOH HOH . D 4 HOH A 58 458 110 HOH HOH . D 4 HOH A 59 459 53 HOH HOH . D 4 HOH A 60 460 23 HOH HOH . D 4 HOH A 61 461 25 HOH HOH . D 4 HOH A 62 462 71 HOH HOH . D 4 HOH A 63 463 63 HOH HOH . D 4 HOH A 64 464 66 HOH HOH . D 4 HOH A 65 465 116 HOH HOH . D 4 HOH A 66 466 62 HOH HOH . D 4 HOH A 67 467 178 HOH HOH . D 4 HOH A 68 468 32 HOH HOH . D 4 HOH A 69 469 170 HOH HOH . D 4 HOH A 70 470 155 HOH HOH . D 4 HOH A 71 471 21 HOH HOH . D 4 HOH A 72 472 42 HOH HOH . D 4 HOH A 73 473 177 HOH HOH . D 4 HOH A 74 474 34 HOH HOH . D 4 HOH A 75 475 179 HOH HOH . D 4 HOH A 76 476 171 HOH HOH . D 4 HOH A 77 477 148 HOH HOH . D 4 HOH A 78 478 115 HOH HOH . D 4 HOH A 79 479 78 HOH HOH . D 4 HOH A 80 480 147 HOH HOH . D 4 HOH A 81 481 184 HOH HOH . D 4 HOH A 82 482 104 HOH HOH . D 4 HOH A 83 483 186 HOH HOH . D 4 HOH A 84 484 161 HOH HOH . D 4 HOH A 85 485 152 HOH HOH . D 4 HOH A 86 486 183 HOH HOH . D 4 HOH A 87 487 181 HOH HOH . D 4 HOH A 88 488 131 HOH HOH . D 4 HOH A 89 489 49 HOH HOH . D 4 HOH A 90 490 103 HOH HOH . D 4 HOH A 91 491 187 HOH HOH . D 4 HOH A 92 492 117 HOH HOH . D 4 HOH A 93 493 159 HOH HOH . D 4 HOH A 94 494 180 HOH HOH . D 4 HOH A 95 495 145 HOH HOH . D 4 HOH A 96 496 22 HOH HOH . D 4 HOH A 97 497 113 HOH HOH . D 4 HOH A 98 498 176 HOH HOH . D 4 HOH A 99 499 142 HOH HOH . D 4 HOH A 100 500 158 HOH HOH . D 4 HOH A 101 501 165 HOH HOH . D 4 HOH A 102 502 1 HOH HOH . D 4 HOH A 103 503 2 HOH HOH . D 4 HOH A 104 504 4 HOH HOH . D 4 HOH A 105 505 5 HOH HOH . D 4 HOH A 106 506 6 HOH HOH . D 4 HOH A 107 507 12 HOH HOH . D 4 HOH A 108 508 13 HOH HOH . D 4 HOH A 109 509 15 HOH HOH . D 4 HOH A 110 510 16 HOH HOH . D 4 HOH A 111 511 18 HOH HOH . D 4 HOH A 112 512 24 HOH HOH . D 4 HOH A 113 513 26 HOH HOH . D 4 HOH A 114 514 27 HOH HOH . D 4 HOH A 115 515 30 HOH HOH . D 4 HOH A 116 516 31 HOH HOH . D 4 HOH A 117 517 33 HOH HOH . D 4 HOH A 118 518 36 HOH HOH . D 4 HOH A 119 519 37 HOH HOH . D 4 HOH A 120 520 38 HOH HOH . D 4 HOH A 121 521 40 HOH HOH . D 4 HOH A 122 522 41 HOH HOH . D 4 HOH A 123 523 44 HOH HOH . D 4 HOH A 124 524 51 HOH HOH . D 4 HOH A 125 525 52 HOH HOH . D 4 HOH A 126 526 54 HOH HOH . D 4 HOH A 127 527 55 HOH HOH . D 4 HOH A 128 528 56 HOH HOH . D 4 HOH A 129 529 57 HOH HOH . D 4 HOH A 130 530 59 HOH HOH . D 4 HOH A 131 531 60 HOH HOH . D 4 HOH A 132 532 65 HOH HOH . D 4 HOH A 133 533 69 HOH HOH . D 4 HOH A 134 534 70 HOH HOH . D 4 HOH A 135 535 72 HOH HOH . D 4 HOH A 136 536 73 HOH HOH . D 4 HOH A 137 537 75 HOH HOH . D 4 HOH A 138 538 76 HOH HOH . D 4 HOH A 139 539 79 HOH HOH . D 4 HOH A 140 540 80 HOH HOH . D 4 HOH A 141 541 83 HOH HOH . D 4 HOH A 142 542 84 HOH HOH . D 4 HOH A 143 543 85 HOH HOH . D 4 HOH A 144 544 87 HOH HOH . D 4 HOH A 145 545 89 HOH HOH . D 4 HOH A 146 546 91 HOH HOH . D 4 HOH A 147 547 93 HOH HOH . D 4 HOH A 148 548 94 HOH HOH . D 4 HOH A 149 549 96 HOH HOH . D 4 HOH A 150 550 97 HOH HOH . D 4 HOH A 151 551 98 HOH HOH . D 4 HOH A 152 552 99 HOH HOH . D 4 HOH A 153 553 100 HOH HOH . D 4 HOH A 154 554 101 HOH HOH . D 4 HOH A 155 555 102 HOH HOH . D 4 HOH A 156 556 105 HOH HOH . D 4 HOH A 157 557 106 HOH HOH . D 4 HOH A 158 558 107 HOH HOH . D 4 HOH A 159 559 108 HOH HOH . D 4 HOH A 160 560 114 HOH HOH . D 4 HOH A 161 561 120 HOH HOH . D 4 HOH A 162 562 127 HOH HOH . D 4 HOH A 163 563 130 HOH HOH . D 4 HOH A 164 564 134 HOH HOH . D 4 HOH A 165 565 135 HOH HOH . D 4 HOH A 166 566 136 HOH HOH . D 4 HOH A 167 567 137 HOH HOH . D 4 HOH A 168 568 138 HOH HOH . D 4 HOH A 169 569 140 HOH HOH . D 4 HOH A 170 570 141 HOH HOH . D 4 HOH A 171 571 144 HOH HOH . D 4 HOH A 172 572 146 HOH HOH . D 4 HOH A 173 573 149 HOH HOH . D 4 HOH A 174 574 150 HOH HOH . D 4 HOH A 175 575 151 HOH HOH . D 4 HOH A 176 576 153 HOH HOH . D 4 HOH A 177 577 156 HOH HOH . D 4 HOH A 178 578 160 HOH HOH . D 4 HOH A 179 579 163 HOH HOH . D 4 HOH A 180 580 164 HOH HOH . D 4 HOH A 181 581 166 HOH HOH . D 4 HOH A 182 582 167 HOH HOH . D 4 HOH A 183 583 168 HOH HOH . D 4 HOH A 184 584 169 HOH HOH . D 4 HOH A 185 585 173 HOH HOH . D 4 HOH A 186 586 175 HOH HOH . D 4 HOH A 187 587 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 4F9 . . . B 2 -21.716 40.596 -8.399 1 22.64 ? C7 4F9 301 A 1 HETATM 2 C C4 4F9 . . . B 2 -20.587 42.168 -6.955 1 24.96 ? C4 4F9 301 A 1 HETATM 3 C C6 4F9 . . . B 2 -22.85 40.753 -7.598 1 24.12 ? C6 4F9 301 A 1 HETATM 4 C C5 4F9 . . . B 2 -21.763 42.263 -6.21 1 21.67 ? C5 4F9 301 A 1 HETATM 5 C C2 4F9 . . . B 2 -19.114 40.24 -9.858 1 25.2 ? C2 4F9 301 A 1 HETATM 6 C C 4F9 . . . B 2 -17.329 41.583 -9.564 1 27.42 ? C 4F9 301 A 1 HETATM 7 C C3 4F9 . . . B 2 -20.568 41.319 -8.064 1 24.21 ? C3 4F9 301 A 1 HETATM 8 C C1 4F9 . . . B 2 -19.365 41.176 -8.85 1 25.32 ? C1 4F9 301 A 1 HETATM 9 N N2 4F9 . . . B 2 -22.893 41.568 -6.513 1 23.13 ? N2 4F9 301 A 1 HETATM 10 N N 4F9 . . . B 2 -18.247 42.02 -8.666 1 24.06 ? N 4F9 301 A 1 HETATM 11 N N1 4F9 . . . B 2 -17.816 40.502 -10.306 1 25.67 ? N1 4F9 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #