data_4YPZ # _model_server_result.job_id 9HSXHVumaNlaBPGUyaf3tA _model_server_result.datetime_utc '2024-11-05 15:35:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ypz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YPZ # _exptl.entry_id 4YPZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 145.161 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(1H-imidazol-2-yl)pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YPZ _cell.length_a 93.773 _cell.length_b 93.773 _cell.length_c 179.162 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YPZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H7 N3' _chem_comp.formula_weight 145.161 _chem_comp.id 4FL _chem_comp.mon_nstd_flag . _chem_comp.name 4-(1H-imidazol-2-yl)pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N 4FL sing 1 n y C1 C 4FL doub 2 n y N C2 4FL sing 3 n y C N1 4FL sing 4 n y C2 N1 4FL doub 5 n y C2 C3 4FL sing 6 n n C4 C3 4FL doub 7 n y C4 C5 4FL sing 8 n y C3 C7 4FL sing 9 n y C5 N2 4FL doub 10 n y C7 C6 4FL doub 11 n y N2 C6 4FL sing 12 n y C4 H1 4FL sing 13 n n C7 H2 4FL sing 14 n n C5 H3 4FL sing 15 n n C6 H4 4FL sing 16 n n C1 H5 4FL sing 17 n n C H6 4FL sing 18 n n N H7 4FL sing 19 n n # _atom_sites.entry_id 4YPZ _atom_sites.fract_transf_matrix[1][1] 0.010664 _atom_sites.fract_transf_matrix[1][2] 0.006157 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4FL A 1 301 1 4FL UNL . C 3 HOH A 1 401 79 HOH HOH . C 3 HOH A 2 402 57 HOH HOH . C 3 HOH A 3 403 116 HOH HOH . C 3 HOH A 4 404 58 HOH HOH . C 3 HOH A 5 405 39 HOH HOH . C 3 HOH A 6 406 114 HOH HOH . C 3 HOH A 7 407 123 HOH HOH . C 3 HOH A 8 408 27 HOH HOH . C 3 HOH A 9 409 54 HOH HOH . C 3 HOH A 10 410 133 HOH HOH . C 3 HOH A 11 411 2 HOH HOH . C 3 HOH A 12 412 32 HOH HOH . C 3 HOH A 13 413 60 HOH HOH . C 3 HOH A 14 414 128 HOH HOH . C 3 HOH A 15 415 1 HOH HOH . C 3 HOH A 16 416 83 HOH HOH . C 3 HOH A 17 417 65 HOH HOH . C 3 HOH A 18 418 43 HOH HOH . C 3 HOH A 19 419 28 HOH HOH . C 3 HOH A 20 420 47 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 26 HOH HOH . C 3 HOH A 24 424 72 HOH HOH . C 3 HOH A 25 425 137 HOH HOH . C 3 HOH A 26 426 10 HOH HOH . C 3 HOH A 27 427 86 HOH HOH . C 3 HOH A 28 428 103 HOH HOH . C 3 HOH A 29 429 5 HOH HOH . C 3 HOH A 30 430 112 HOH HOH . C 3 HOH A 31 431 16 HOH HOH . C 3 HOH A 32 432 42 HOH HOH . C 3 HOH A 33 433 11 HOH HOH . C 3 HOH A 34 434 95 HOH HOH . C 3 HOH A 35 435 31 HOH HOH . C 3 HOH A 36 436 35 HOH HOH . C 3 HOH A 37 437 20 HOH HOH . C 3 HOH A 38 438 25 HOH HOH . C 3 HOH A 39 439 19 HOH HOH . C 3 HOH A 40 440 63 HOH HOH . C 3 HOH A 41 441 126 HOH HOH . C 3 HOH A 42 442 90 HOH HOH . C 3 HOH A 43 443 23 HOH HOH . C 3 HOH A 44 444 3 HOH HOH . C 3 HOH A 45 445 73 HOH HOH . C 3 HOH A 46 446 92 HOH HOH . C 3 HOH A 47 447 38 HOH HOH . C 3 HOH A 48 448 136 HOH HOH . C 3 HOH A 49 449 4 HOH HOH . C 3 HOH A 50 450 113 HOH HOH . C 3 HOH A 51 451 55 HOH HOH . C 3 HOH A 52 452 120 HOH HOH . C 3 HOH A 53 453 7 HOH HOH . C 3 HOH A 54 454 56 HOH HOH . C 3 HOH A 55 455 70 HOH HOH . C 3 HOH A 56 456 115 HOH HOH . C 3 HOH A 57 457 40 HOH HOH . C 3 HOH A 58 458 49 HOH HOH . C 3 HOH A 59 459 36 HOH HOH . C 3 HOH A 60 460 101 HOH HOH . C 3 HOH A 61 461 8 HOH HOH . C 3 HOH A 62 462 82 HOH HOH . C 3 HOH A 63 463 81 HOH HOH . C 3 HOH A 64 464 122 HOH HOH . C 3 HOH A 65 465 15 HOH HOH . C 3 HOH A 66 466 124 HOH HOH . C 3 HOH A 67 467 71 HOH HOH . C 3 HOH A 68 468 111 HOH HOH . C 3 HOH A 69 469 66 HOH HOH . C 3 HOH A 70 470 125 HOH HOH . C 3 HOH A 71 471 62 HOH HOH . C 3 HOH A 72 472 100 HOH HOH . C 3 HOH A 73 473 69 HOH HOH . C 3 HOH A 74 474 108 HOH HOH . C 3 HOH A 75 475 12 HOH HOH . C 3 HOH A 76 476 75 HOH HOH . C 3 HOH A 77 477 51 HOH HOH . C 3 HOH A 78 478 50 HOH HOH . C 3 HOH A 79 479 14 HOH HOH . C 3 HOH A 80 480 88 HOH HOH . C 3 HOH A 81 481 84 HOH HOH . C 3 HOH A 82 482 131 HOH HOH . C 3 HOH A 83 483 30 HOH HOH . C 3 HOH A 84 484 45 HOH HOH . C 3 HOH A 85 485 105 HOH HOH . C 3 HOH A 86 486 78 HOH HOH . C 3 HOH A 87 487 9 HOH HOH . C 3 HOH A 88 488 98 HOH HOH . C 3 HOH A 89 489 61 HOH HOH . C 3 HOH A 90 490 29 HOH HOH . C 3 HOH A 91 491 96 HOH HOH . C 3 HOH A 92 492 17 HOH HOH . C 3 HOH A 93 493 107 HOH HOH . C 3 HOH A 94 494 117 HOH HOH . C 3 HOH A 95 495 110 HOH HOH . C 3 HOH A 96 496 76 HOH HOH . C 3 HOH A 97 497 68 HOH HOH . C 3 HOH A 98 498 46 HOH HOH . C 3 HOH A 99 499 129 HOH HOH . C 3 HOH A 100 500 37 HOH HOH . C 3 HOH A 101 501 80 HOH HOH . C 3 HOH A 102 502 13 HOH HOH . C 3 HOH A 103 503 53 HOH HOH . C 3 HOH A 104 504 87 HOH HOH . C 3 HOH A 105 505 67 HOH HOH . C 3 HOH A 106 506 6 HOH HOH . C 3 HOH A 107 507 18 HOH HOH . C 3 HOH A 108 508 24 HOH HOH . C 3 HOH A 109 509 34 HOH HOH . C 3 HOH A 110 510 64 HOH HOH . C 3 HOH A 111 511 93 HOH HOH . C 3 HOH A 112 512 52 HOH HOH . C 3 HOH A 113 513 104 HOH HOH . C 3 HOH A 114 514 130 HOH HOH . C 3 HOH A 115 515 33 HOH HOH . C 3 HOH A 116 516 134 HOH HOH . C 3 HOH A 117 517 48 HOH HOH . C 3 HOH A 118 518 106 HOH HOH . C 3 HOH A 119 519 77 HOH HOH . C 3 HOH A 120 520 102 HOH HOH . C 3 HOH A 121 521 121 HOH HOH . C 3 HOH A 122 522 109 HOH HOH . C 3 HOH A 123 523 85 HOH HOH . C 3 HOH A 124 524 91 HOH HOH . C 3 HOH A 125 525 119 HOH HOH . C 3 HOH A 126 526 89 HOH HOH . C 3 HOH A 127 527 44 HOH HOH . C 3 HOH A 128 528 99 HOH HOH . C 3 HOH A 129 529 74 HOH HOH . C 3 HOH A 130 530 127 HOH HOH . C 3 HOH A 131 531 94 HOH HOH . C 3 HOH A 132 532 135 HOH HOH . C 3 HOH A 133 533 59 HOH HOH . C 3 HOH A 134 534 118 HOH HOH . C 3 HOH A 135 535 41 HOH HOH . C 3 HOH A 136 536 132 HOH HOH . C 3 HOH A 137 537 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4FL . . . B 2 -21.762 40.305 -8.611 1 28.02 ? C4 4FL 301 A 1 HETATM 2 C C7 4FL . . . B 2 -20.535 41.94 -7.314 1 32.25 ? C7 4FL 301 A 1 HETATM 3 C C5 4FL . . . B 2 -22.876 40.576 -7.812 1 27.23 ? C5 4FL 301 A 1 HETATM 4 C C6 4FL . . . B 2 -21.696 42.148 -6.567 1 32.36 ? C6 4FL 301 A 1 HETATM 5 C C1 4FL . . . B 2 -17.969 39.8 -10.58 1 34 ? C1 4FL 301 A 1 HETATM 6 C C 4FL . . . B 2 -17.327 40.837 -9.905 1 32.1 ? C 4FL 301 A 1 HETATM 7 C C3 4FL . . . B 2 -20.583 41 -8.344 1 31.2 ? C3 4FL 301 A 1 HETATM 8 C C2 4FL . . . B 2 -19.374 40.752 -9.116 1 30.43 ? C2 4FL 301 A 1 HETATM 9 N N2 4FL . . . B 2 -22.859 41.48 -6.796 1 28.02 ? N2 4FL 301 A 1 HETATM 10 N N 4FL . . . B 2 -19.272 39.752 -10.073 1 33.06 ? N 4FL 301 A 1 HETATM 11 N N1 4FL . . . B 2 -18.194 41.438 -8.991 1 26.58 ? N1 4FL 301 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #