data_4YQ5 # _model_server_result.job_id ow5qz2x8uK-lqA18F9boOw _model_server_result.datetime_utc '2024-10-19 08:21:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YQ5 # _exptl.entry_id 4YQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.33 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[3-(dimethylamino)benzyl]amino}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YQ5 _cell.length_a 94.554 _cell.length_b 94.554 _cell.length_c 178.787 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H18 N4 O' _chem_comp.formula_weight 270.33 _chem_comp.id 4G0 _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[3-(dimethylamino)benzyl]amino}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N 4G0 sing 1 n n C3 C4 4G0 doub 2 n y C3 C2 4G0 sing 3 n y C4 C5 4G0 sing 4 n y N C2 4G0 sing 5 n n N C1 4G0 sing 6 n n C2 C14 4G0 doub 7 n y C5 C6 4G0 doub 8 n y C14 C6 4G0 sing 9 n y C6 C7 4G0 sing 10 n n C7 N1 4G0 sing 11 n n N1 C8 4G0 sing 12 n n C9 C8 4G0 doub 13 n y C9 C10 4G0 sing 14 n y C8 N2 4G0 sing 15 n y C10 C11 4G0 doub 16 n y N2 C12 4G0 doub 17 n y C11 C12 4G0 sing 18 n y C11 C13 4G0 sing 19 n n C13 O 4G0 doub 20 n n C13 N3 4G0 sing 21 n n C4 H1 4G0 sing 22 n n C10 H2 4G0 sing 23 n n C5 H3 4G0 sing 24 n n C3 H4 4G0 sing 25 n n C9 H5 4G0 sing 26 n n C14 H6 4G0 sing 27 n n C12 H7 4G0 sing 28 n n C H8 4G0 sing 29 n n C H9 4G0 sing 30 n n C H10 4G0 sing 31 n n C1 H11 4G0 sing 32 n n C1 H12 4G0 sing 33 n n C1 H13 4G0 sing 34 n n C7 H14 4G0 sing 35 n n C7 H15 4G0 sing 36 n n N3 H16 4G0 sing 37 n n N3 H17 4G0 sing 38 n n N1 H18 4G0 sing 39 n n # _atom_sites.entry_id 4YQ5 _atom_sites.fract_transf_matrix[1][1] 0.010576 _atom_sites.fract_transf_matrix[1][2] 0.006106 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4G0 A 1 301 1 4G0 UNL . C 3 FLC A 1 302 1 FLC FLC . D 4 HOH A 1 401 46 HOH HOH . D 4 HOH A 2 402 144 HOH HOH . D 4 HOH A 3 403 135 HOH HOH . D 4 HOH A 4 404 147 HOH HOH . D 4 HOH A 5 405 99 HOH HOH . D 4 HOH A 6 406 53 HOH HOH . D 4 HOH A 7 407 166 HOH HOH . D 4 HOH A 8 408 7 HOH HOH . D 4 HOH A 9 409 24 HOH HOH . D 4 HOH A 10 410 69 HOH HOH . D 4 HOH A 11 411 129 HOH HOH . D 4 HOH A 12 412 160 HOH HOH . D 4 HOH A 13 413 112 HOH HOH . D 4 HOH A 14 414 123 HOH HOH . D 4 HOH A 15 415 113 HOH HOH . D 4 HOH A 16 416 60 HOH HOH . D 4 HOH A 17 417 25 HOH HOH . D 4 HOH A 18 418 33 HOH HOH . D 4 HOH A 19 419 87 HOH HOH . D 4 HOH A 20 420 63 HOH HOH . D 4 HOH A 21 421 136 HOH HOH . D 4 HOH A 22 422 98 HOH HOH . D 4 HOH A 23 423 83 HOH HOH . D 4 HOH A 24 424 118 HOH HOH . D 4 HOH A 25 425 104 HOH HOH . D 4 HOH A 26 426 121 HOH HOH . D 4 HOH A 27 427 5 HOH HOH . D 4 HOH A 28 428 47 HOH HOH . D 4 HOH A 29 429 6 HOH HOH . D 4 HOH A 30 430 17 HOH HOH . D 4 HOH A 31 431 156 HOH HOH . D 4 HOH A 32 432 92 HOH HOH . D 4 HOH A 33 433 43 HOH HOH . D 4 HOH A 34 434 127 HOH HOH . D 4 HOH A 35 435 40 HOH HOH . D 4 HOH A 36 436 2 HOH HOH . D 4 HOH A 37 437 39 HOH HOH . D 4 HOH A 38 438 34 HOH HOH . D 4 HOH A 39 439 36 HOH HOH . D 4 HOH A 40 440 61 HOH HOH . D 4 HOH A 41 441 3 HOH HOH . D 4 HOH A 42 442 119 HOH HOH . D 4 HOH A 43 443 133 HOH HOH . D 4 HOH A 44 444 42 HOH HOH . D 4 HOH A 45 445 52 HOH HOH . D 4 HOH A 46 446 180 HOH HOH . D 4 HOH A 47 447 16 HOH HOH . D 4 HOH A 48 448 93 HOH HOH . D 4 HOH A 49 449 132 HOH HOH . D 4 HOH A 50 450 161 HOH HOH . D 4 HOH A 51 451 70 HOH HOH . D 4 HOH A 52 452 178 HOH HOH . D 4 HOH A 53 453 19 HOH HOH . D 4 HOH A 54 454 152 HOH HOH . D 4 HOH A 55 455 29 HOH HOH . D 4 HOH A 56 456 171 HOH HOH . D 4 HOH A 57 457 80 HOH HOH . D 4 HOH A 58 458 73 HOH HOH . D 4 HOH A 59 459 68 HOH HOH . D 4 HOH A 60 460 28 HOH HOH . D 4 HOH A 61 461 44 HOH HOH . D 4 HOH A 62 462 11 HOH HOH . D 4 HOH A 63 463 114 HOH HOH . D 4 HOH A 64 464 21 HOH HOH . D 4 HOH A 65 465 32 HOH HOH . D 4 HOH A 66 466 10 HOH HOH . D 4 HOH A 67 467 125 HOH HOH . D 4 HOH A 68 468 59 HOH HOH . D 4 HOH A 69 469 107 HOH HOH . D 4 HOH A 70 470 31 HOH HOH . D 4 HOH A 71 471 78 HOH HOH . D 4 HOH A 72 472 77 HOH HOH . D 4 HOH A 73 473 18 HOH HOH . D 4 HOH A 74 474 35 HOH HOH . D 4 HOH A 75 475 145 HOH HOH . D 4 HOH A 76 476 41 HOH HOH . D 4 HOH A 77 477 117 HOH HOH . D 4 HOH A 78 478 101 HOH HOH . D 4 HOH A 79 479 81 HOH HOH . D 4 HOH A 80 480 12 HOH HOH . D 4 HOH A 81 481 23 HOH HOH . D 4 HOH A 82 482 50 HOH HOH . D 4 HOH A 83 483 58 HOH HOH . D 4 HOH A 84 484 91 HOH HOH . D 4 HOH A 85 485 66 HOH HOH . D 4 HOH A 86 486 74 HOH HOH . D 4 HOH A 87 487 115 HOH HOH . D 4 HOH A 88 488 38 HOH HOH . D 4 HOH A 89 489 1 HOH HOH . D 4 HOH A 90 490 27 HOH HOH . D 4 HOH A 91 491 172 HOH HOH . D 4 HOH A 92 492 157 HOH HOH . D 4 HOH A 93 493 54 HOH HOH . D 4 HOH A 94 494 30 HOH HOH . D 4 HOH A 95 495 15 HOH HOH . D 4 HOH A 96 496 56 HOH HOH . D 4 HOH A 97 497 100 HOH HOH . D 4 HOH A 98 498 65 HOH HOH . D 4 HOH A 99 499 55 HOH HOH . D 4 HOH A 100 500 26 HOH HOH . D 4 HOH A 101 501 49 HOH HOH . D 4 HOH A 102 502 95 HOH HOH . D 4 HOH A 103 503 8 HOH HOH . D 4 HOH A 104 504 103 HOH HOH . D 4 HOH A 105 505 4 HOH HOH . D 4 HOH A 106 506 64 HOH HOH . D 4 HOH A 107 507 137 HOH HOH . D 4 HOH A 108 508 22 HOH HOH . D 4 HOH A 109 509 142 HOH HOH . D 4 HOH A 110 510 75 HOH HOH . D 4 HOH A 111 511 76 HOH HOH . D 4 HOH A 112 512 37 HOH HOH . D 4 HOH A 113 513 122 HOH HOH . D 4 HOH A 114 514 150 HOH HOH . D 4 HOH A 115 515 90 HOH HOH . D 4 HOH A 116 516 167 HOH HOH . D 4 HOH A 117 517 168 HOH HOH . D 4 HOH A 118 518 57 HOH HOH . D 4 HOH A 119 519 143 HOH HOH . D 4 HOH A 120 520 67 HOH HOH . D 4 HOH A 121 521 155 HOH HOH . D 4 HOH A 122 522 151 HOH HOH . D 4 HOH A 123 523 13 HOH HOH . D 4 HOH A 124 524 9 HOH HOH . D 4 HOH A 125 525 177 HOH HOH . D 4 HOH A 126 526 148 HOH HOH . D 4 HOH A 127 527 97 HOH HOH . D 4 HOH A 128 528 173 HOH HOH . D 4 HOH A 129 529 94 HOH HOH . D 4 HOH A 130 530 183 HOH HOH . D 4 HOH A 131 531 170 HOH HOH . D 4 HOH A 132 532 14 HOH HOH . D 4 HOH A 133 533 62 HOH HOH . D 4 HOH A 134 534 149 HOH HOH . D 4 HOH A 135 535 130 HOH HOH . D 4 HOH A 136 536 139 HOH HOH . D 4 HOH A 137 537 141 HOH HOH . D 4 HOH A 138 538 84 HOH HOH . D 4 HOH A 139 539 82 HOH HOH . D 4 HOH A 140 540 71 HOH HOH . D 4 HOH A 141 541 181 HOH HOH . D 4 HOH A 142 542 176 HOH HOH . D 4 HOH A 143 543 45 HOH HOH . D 4 HOH A 144 544 162 HOH HOH . D 4 HOH A 145 545 158 HOH HOH . D 4 HOH A 146 546 106 HOH HOH . D 4 HOH A 147 547 153 HOH HOH . D 4 HOH A 148 548 134 HOH HOH . D 4 HOH A 149 549 88 HOH HOH . D 4 HOH A 150 550 96 HOH HOH . D 4 HOH A 151 551 182 HOH HOH . D 4 HOH A 152 552 131 HOH HOH . D 4 HOH A 153 553 111 HOH HOH . D 4 HOH A 154 554 140 HOH HOH . D 4 HOH A 155 555 86 HOH HOH . D 4 HOH A 156 556 72 HOH HOH . D 4 HOH A 157 557 165 HOH HOH . D 4 HOH A 158 558 108 HOH HOH . D 4 HOH A 159 559 110 HOH HOH . D 4 HOH A 160 560 51 HOH HOH . D 4 HOH A 161 561 179 HOH HOH . D 4 HOH A 162 562 48 HOH HOH . D 4 HOH A 163 563 138 HOH HOH . D 4 HOH A 164 564 163 HOH HOH . D 4 HOH A 165 565 128 HOH HOH . D 4 HOH A 166 566 109 HOH HOH . D 4 HOH A 167 567 89 HOH HOH . D 4 HOH A 168 568 174 HOH HOH . D 4 HOH A 169 569 85 HOH HOH . D 4 HOH A 170 570 146 HOH HOH . D 4 HOH A 171 571 164 HOH HOH . D 4 HOH A 172 572 159 HOH HOH . D 4 HOH A 173 573 105 HOH HOH . D 4 HOH A 174 574 102 HOH HOH . D 4 HOH A 175 575 154 HOH HOH . D 4 HOH A 176 576 79 HOH HOH . D 4 HOH A 177 577 124 HOH HOH . D 4 HOH A 178 578 175 HOH HOH . D 4 HOH A 179 579 20 HOH HOH . D 4 HOH A 180 580 126 HOH HOH . D 4 HOH A 181 581 116 HOH HOH . D 4 HOH A 182 582 120 HOH HOH . D 4 HOH A 183 583 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4G0 . . . B 2 -19.618 41.637 -13.568 1 25.75 ? C4 4G0 301 A 1 HETATM 2 C C10 4G0 . . . B 2 -21.152 40.696 -8.435 1 16.22 ? C10 4G0 301 A 1 HETATM 3 C C5 4G0 . . . B 2 -19.245 40.67 -12.628 1 23.42 ? C5 4G0 301 A 1 HETATM 4 C C3 4G0 . . . B 2 -18.847 42.778 -13.755 1 25.2 ? C3 4G0 301 A 1 HETATM 5 C C9 4G0 . . . B 2 -20.056 40.276 -9.156 1 17.77 ? C9 4G0 301 A 1 HETATM 6 C C14 4G0 . . . B 2 -17.3 41.996 -12.044 1 22.4 ? C14 4G0 301 A 1 HETATM 7 C C12 4G0 . . . B 2 -19.688 42.044 -7.086 1 16.93 ? C12 4G0 301 A 1 HETATM 8 C C11 4G0 . . . B 2 -20.983 41.601 -7.38 1 15.69 ? C11 4G0 301 A 1 HETATM 9 C C6 4G0 . . . B 2 -18.086 40.859 -11.867 1 19.1 ? C6 4G0 301 A 1 HETATM 10 C C2 4G0 . . . B 2 -17.682 42.969 -12.997 1 29.05 ? C2 4G0 301 A 1 HETATM 11 C C8 4G0 . . . B 2 -18.765 40.779 -8.794 1 15.32 ? C8 4G0 301 A 1 HETATM 12 C C13 4G0 . . . B 2 -22.148 42.055 -6.608 1 20.53 ? C13 4G0 301 A 1 HETATM 13 C C 4G0 . . . B 2 -17.249 45.151 -14.181 1 38.77 ? C 4G0 301 A 1 HETATM 14 C C1 4G0 . . . B 2 -15.658 44.377 -12.452 1 28.13 ? C1 4G0 301 A 1 HETATM 15 C C7 4G0 . . . B 2 -17.664 39.857 -10.808 1 18.31 ? C7 4G0 301 A 1 HETATM 16 N N2 4G0 . . . B 2 -18.588 41.666 -7.744 1 19.22 ? N2 4G0 301 A 1 HETATM 17 N N3 4G0 . . . B 2 -22.017 43.252 -5.897 1 18.18 ? N3 4G0 301 A 1 HETATM 18 N N1 4G0 . . . B 2 -17.615 40.544 -9.516 1 17.67 ? N1 4G0 301 A 1 HETATM 19 N N 4G0 . . . B 2 -16.902 44.115 -13.193 1 31.5 ? N 4G0 301 A 1 HETATM 20 O O 4G0 . . . B 2 -23.198 41.417 -6.554 1 19.64 ? O 4G0 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 20 #