data_4YQB # _model_server_result.job_id bW6oTX0by7jm5np7JD_qfA _model_server_result.datetime_utc '2024-10-19 08:24:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YQB # _exptl.entry_id 4YQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.261 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(2-hydroxybenzyl)amino]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YQB _cell.length_a 94.605 _cell.length_b 94.605 _cell.length_c 178.818 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H13 N3 O2' _chem_comp.formula_weight 243.261 _chem_comp.id 4GM _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(2-hydroxybenzyl)amino]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 4GM doub 1 n y C10 C11 4GM sing 2 n y C9 C8 4GM sing 3 n y O1 C11 4GM sing 4 n n C11 C6 4GM doub 5 n y C8 C7 4GM doub 6 n y C6 C7 4GM sing 7 n y C6 C5 4GM sing 8 n n C5 N1 4GM sing 9 n n N1 C4 4GM sing 10 n n C3 C4 4GM doub 11 n y C3 C2 4GM sing 12 n y C4 N2 4GM sing 13 n y C2 C1 4GM doub 14 n y N2 C12 4GM doub 15 n y C1 C12 4GM sing 16 n y C1 C 4GM sing 17 n n C O 4GM doub 18 n n C N 4GM sing 19 n n C8 H1 4GM sing 20 n n C9 H2 4GM sing 21 n n C2 H3 4GM sing 22 n n C7 H4 4GM sing 23 n n C10 H5 4GM sing 24 n n C3 H6 4GM sing 25 n n C12 H7 4GM sing 26 n n C5 H8 4GM sing 27 n n C5 H9 4GM sing 28 n n N H10 4GM sing 29 n n N H11 4GM sing 30 n n N1 H12 4GM sing 31 n n O1 H13 4GM sing 32 n n # _atom_sites.entry_id 4YQB _atom_sites.fract_transf_matrix[1][1] 0.01057 _atom_sites.fract_transf_matrix[1][2] 0.006103 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4GM A 1 301 1 4GM UNL . C 3 HOH A 1 401 64 HOH HOH . C 3 HOH A 2 402 24 HOH HOH . C 3 HOH A 3 403 69 HOH HOH . C 3 HOH A 4 404 29 HOH HOH . C 3 HOH A 5 405 26 HOH HOH . C 3 HOH A 6 406 7 HOH HOH . C 3 HOH A 7 407 61 HOH HOH . C 3 HOH A 8 408 23 HOH HOH . C 3 HOH A 9 409 84 HOH HOH . C 3 HOH A 10 410 37 HOH HOH . C 3 HOH A 11 411 4 HOH HOH . C 3 HOH A 12 412 46 HOH HOH . C 3 HOH A 13 413 73 HOH HOH . C 3 HOH A 14 414 52 HOH HOH . C 3 HOH A 15 415 75 HOH HOH . C 3 HOH A 16 416 17 HOH HOH . C 3 HOH A 17 417 3 HOH HOH . C 3 HOH A 18 418 25 HOH HOH . C 3 HOH A 19 419 36 HOH HOH . C 3 HOH A 20 420 48 HOH HOH . C 3 HOH A 21 421 27 HOH HOH . C 3 HOH A 22 422 5 HOH HOH . C 3 HOH A 23 423 58 HOH HOH . C 3 HOH A 24 424 22 HOH HOH . C 3 HOH A 25 425 40 HOH HOH . C 3 HOH A 26 426 11 HOH HOH . C 3 HOH A 27 427 85 HOH HOH . C 3 HOH A 28 428 14 HOH HOH . C 3 HOH A 29 429 21 HOH HOH . C 3 HOH A 30 430 74 HOH HOH . C 3 HOH A 31 431 44 HOH HOH . C 3 HOH A 32 432 68 HOH HOH . C 3 HOH A 33 433 83 HOH HOH . C 3 HOH A 34 434 62 HOH HOH . C 3 HOH A 35 435 76 HOH HOH . C 3 HOH A 36 436 8 HOH HOH . C 3 HOH A 37 437 39 HOH HOH . C 3 HOH A 38 438 34 HOH HOH . C 3 HOH A 39 439 51 HOH HOH . C 3 HOH A 40 440 90 HOH HOH . C 3 HOH A 41 441 63 HOH HOH . C 3 HOH A 42 442 28 HOH HOH . C 3 HOH A 43 443 18 HOH HOH . C 3 HOH A 44 444 57 HOH HOH . C 3 HOH A 45 445 91 HOH HOH . C 3 HOH A 46 446 66 HOH HOH . C 3 HOH A 47 447 45 HOH HOH . C 3 HOH A 48 448 47 HOH HOH . C 3 HOH A 49 449 86 HOH HOH . C 3 HOH A 50 450 67 HOH HOH . C 3 HOH A 51 451 54 HOH HOH . C 3 HOH A 52 452 93 HOH HOH . C 3 HOH A 53 453 87 HOH HOH . C 3 HOH A 54 454 56 HOH HOH . C 3 HOH A 55 455 80 HOH HOH . C 3 HOH A 56 456 71 HOH HOH . C 3 HOH A 57 457 72 HOH HOH . C 3 HOH A 58 458 82 HOH HOH . C 3 HOH A 59 459 79 HOH HOH . C 3 HOH A 60 460 1 HOH HOH . C 3 HOH A 61 461 2 HOH HOH . C 3 HOH A 62 462 6 HOH HOH . C 3 HOH A 63 463 9 HOH HOH . C 3 HOH A 64 464 10 HOH HOH . C 3 HOH A 65 465 12 HOH HOH . C 3 HOH A 66 466 13 HOH HOH . C 3 HOH A 67 467 15 HOH HOH . C 3 HOH A 68 468 16 HOH HOH . C 3 HOH A 69 469 19 HOH HOH . C 3 HOH A 70 470 20 HOH HOH . C 3 HOH A 71 471 30 HOH HOH . C 3 HOH A 72 472 31 HOH HOH . C 3 HOH A 73 473 32 HOH HOH . C 3 HOH A 74 474 33 HOH HOH . C 3 HOH A 75 475 35 HOH HOH . C 3 HOH A 76 476 38 HOH HOH . C 3 HOH A 77 477 41 HOH HOH . C 3 HOH A 78 478 42 HOH HOH . C 3 HOH A 79 479 43 HOH HOH . C 3 HOH A 80 480 49 HOH HOH . C 3 HOH A 81 481 50 HOH HOH . C 3 HOH A 82 482 53 HOH HOH . C 3 HOH A 83 483 55 HOH HOH . C 3 HOH A 84 484 59 HOH HOH . C 3 HOH A 85 485 60 HOH HOH . C 3 HOH A 86 486 65 HOH HOH . C 3 HOH A 87 487 70 HOH HOH . C 3 HOH A 88 488 77 HOH HOH . C 3 HOH A 89 489 78 HOH HOH . C 3 HOH A 90 490 81 HOH HOH . C 3 HOH A 91 491 88 HOH HOH . C 3 HOH A 92 492 89 HOH HOH . C 3 HOH A 93 493 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 4GM . . . B 2 -17.501 42.913 -12.597 1 50.9 ? C8 4GM 301 A 1 HETATM 2 C C9 4GM . . . B 2 -18.528 42.796 -13.529 1 47.49 ? C9 4GM 301 A 1 HETATM 3 C C2 4GM . . . B 2 -21.174 40.695 -8.427 1 28.79 ? C2 4GM 301 A 1 HETATM 4 C C7 4GM . . . B 2 -17.212 41.864 -11.733 1 48.92 ? C7 4GM 301 A 1 HETATM 5 C C10 4GM . . . B 2 -19.272 41.63 -13.615 1 45.37 ? C10 4GM 301 A 1 HETATM 6 C C3 4GM . . . B 2 -20.07 40.246 -9.143 1 29.16 ? C3 4GM 301 A 1 HETATM 7 C C12 4GM . . . B 2 -19.711 42.079 -7.127 1 34.18 ? C12 4GM 301 A 1 HETATM 8 C C1 4GM . . . B 2 -21.008 41.623 -7.399 1 30.03 ? C1 4GM 301 A 1 HETATM 9 C C6 4GM . . . B 2 -17.95 40.688 -11.789 1 43.04 ? C6 4GM 301 A 1 HETATM 10 C C11 4GM . . . B 2 -18.972 40.578 -12.75 1 48.64 ? C11 4GM 301 A 1 HETATM 11 C C4 4GM . . . B 2 -18.782 40.734 -8.806 1 29.4 ? C4 4GM 301 A 1 HETATM 12 C C 4GM . . . B 2 -22.173 42.054 -6.621 1 30.45 ? C 4GM 301 A 1 HETATM 13 C C5 4GM . . . B 2 -17.692 39.623 -10.764 1 33.82 ? C5 4GM 301 A 1 HETATM 14 N N2 4GM . . . B 2 -18.605 41.668 -7.784 1 32.94 ? N2 4GM 301 A 1 HETATM 15 N N 4GM . . . B 2 -22.081 43.261 -5.934 1 30.71 ? N 4GM 301 A 1 HETATM 16 N N1 4GM . . . B 2 -17.626 40.41 -9.506 1 26.4 ? N1 4GM 301 A 1 HETATM 17 O O 4GM . . . B 2 -23.205 41.375 -6.536 1 31.41 ? O 4GM 301 A 1 HETATM 18 O O1 4GM . . . B 2 -19.63 39.4 -12.793 1 61 ? O1 4GM 301 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #