data_4YQC # _model_server_result.job_id t2gEd97eu14zOPyt8wjKzg _model_server_result.datetime_utc '2024-11-12 20:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YQC # _exptl.entry_id 4YQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.256 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[(1R,3R)-3-hydroxycyclopentyl]amino}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YQC _cell.length_a 94.182 _cell.length_b 94.182 _cell.length_c 177.635 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N3 O2' _chem_comp.formula_weight 221.256 _chem_comp.id EFW _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[(1R,3R)-3-hydroxycyclopentyl]amino}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C12 EFW sing 83 n n C12 C11 EFW sing 84 n n C12 C14 EFW sing 85 n n C11 C10 EFW sing 86 n n C14 C9 EFW sing 87 n n C10 C9 EFW sing 88 n n C9 N8 EFW sing 89 n n N8 C7 EFW sing 90 n n C6 C7 EFW doub 91 n y C6 C5 EFW sing 92 n y C7 N15 EFW sing 93 n y C5 C4 EFW doub 94 n y N15 C16 EFW doub 95 n y C4 C16 EFW sing 96 n y C4 C2 EFW sing 97 n n C2 O3 EFW doub 98 n n C2 N1 EFW sing 99 n n C5 H1 EFW sing 100 n n C6 H2 EFW sing 101 n n C16 H3 EFW sing 102 n n C10 H4 EFW sing 103 n n C10 H5 EFW sing 104 n n C11 H6 EFW sing 105 n n C11 H7 EFW sing 106 n n C14 H8 EFW sing 107 n n C14 H9 EFW sing 108 n n C9 H10 EFW sing 109 n n C12 H11 EFW sing 110 n n N1 H12 EFW sing 111 n n N1 H13 EFW sing 112 n n N8 H14 EFW sing 113 n n O13 H15 EFW sing 114 n n # _atom_sites.entry_id 4YQC _atom_sites.fract_transf_matrix[1][1] 0.010618 _atom_sites.fract_transf_matrix[1][2] 0.00613 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01226 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EFW A 1 301 1 EFW UNL . C 3 HOH A 1 401 38 HOH HOH . C 3 HOH A 2 402 43 HOH HOH . C 3 HOH A 3 403 47 HOH HOH . C 3 HOH A 4 404 181 HOH HOH . C 3 HOH A 5 405 85 HOH HOH . C 3 HOH A 6 406 106 HOH HOH . C 3 HOH A 7 407 56 HOH HOH . C 3 HOH A 8 408 134 HOH HOH . C 3 HOH A 9 409 178 HOH HOH . C 3 HOH A 10 410 110 HOH HOH . C 3 HOH A 11 411 113 HOH HOH . C 3 HOH A 12 412 128 HOH HOH . C 3 HOH A 13 413 184 HOH HOH . C 3 HOH A 14 414 39 HOH HOH . C 3 HOH A 15 415 8 HOH HOH . C 3 HOH A 16 416 49 HOH HOH . C 3 HOH A 17 417 169 HOH HOH . C 3 HOH A 18 418 24 HOH HOH . C 3 HOH A 19 419 22 HOH HOH . C 3 HOH A 20 420 65 HOH HOH . C 3 HOH A 21 421 183 HOH HOH . C 3 HOH A 22 422 99 HOH HOH . C 3 HOH A 23 423 98 HOH HOH . C 3 HOH A 24 424 57 HOH HOH . C 3 HOH A 25 425 54 HOH HOH . C 3 HOH A 26 426 52 HOH HOH . C 3 HOH A 27 427 21 HOH HOH . C 3 HOH A 28 428 9 HOH HOH . C 3 HOH A 29 429 27 HOH HOH . C 3 HOH A 30 430 51 HOH HOH . C 3 HOH A 31 431 5 HOH HOH . C 3 HOH A 32 432 37 HOH HOH . C 3 HOH A 33 433 95 HOH HOH . C 3 HOH A 34 434 7 HOH HOH . C 3 HOH A 35 435 109 HOH HOH . C 3 HOH A 36 436 127 HOH HOH . C 3 HOH A 37 437 116 HOH HOH . C 3 HOH A 38 438 58 HOH HOH . C 3 HOH A 39 439 163 HOH HOH . C 3 HOH A 40 440 69 HOH HOH . C 3 HOH A 41 441 90 HOH HOH . C 3 HOH A 42 442 77 HOH HOH . C 3 HOH A 43 443 33 HOH HOH . C 3 HOH A 44 444 103 HOH HOH . C 3 HOH A 45 445 3 HOH HOH . C 3 HOH A 46 446 71 HOH HOH . C 3 HOH A 47 447 86 HOH HOH . C 3 HOH A 48 448 25 HOH HOH . C 3 HOH A 49 449 176 HOH HOH . C 3 HOH A 50 450 41 HOH HOH . C 3 HOH A 51 451 146 HOH HOH . C 3 HOH A 52 452 130 HOH HOH . C 3 HOH A 53 453 78 HOH HOH . C 3 HOH A 54 454 89 HOH HOH . C 3 HOH A 55 455 15 HOH HOH . C 3 HOH A 56 456 2 HOH HOH . C 3 HOH A 57 457 14 HOH HOH . C 3 HOH A 58 458 4 HOH HOH . C 3 HOH A 59 459 68 HOH HOH . C 3 HOH A 60 460 31 HOH HOH . C 3 HOH A 61 461 79 HOH HOH . C 3 HOH A 62 462 91 HOH HOH . C 3 HOH A 63 463 45 HOH HOH . C 3 HOH A 64 464 19 HOH HOH . C 3 HOH A 65 465 87 HOH HOH . C 3 HOH A 66 466 32 HOH HOH . C 3 HOH A 67 467 17 HOH HOH . C 3 HOH A 68 468 177 HOH HOH . C 3 HOH A 69 469 81 HOH HOH . C 3 HOH A 70 470 60 HOH HOH . C 3 HOH A 71 471 162 HOH HOH . C 3 HOH A 72 472 59 HOH HOH . C 3 HOH A 73 473 152 HOH HOH . C 3 HOH A 74 474 105 HOH HOH . C 3 HOH A 75 475 167 HOH HOH . C 3 HOH A 76 476 67 HOH HOH . C 3 HOH A 77 477 158 HOH HOH . C 3 HOH A 78 478 150 HOH HOH . C 3 HOH A 79 479 1 HOH HOH . C 3 HOH A 80 480 125 HOH HOH . C 3 HOH A 81 481 115 HOH HOH . C 3 HOH A 82 482 29 HOH HOH . C 3 HOH A 83 483 10 HOH HOH . C 3 HOH A 84 484 153 HOH HOH . C 3 HOH A 85 485 30 HOH HOH . C 3 HOH A 86 486 36 HOH HOH . C 3 HOH A 87 487 92 HOH HOH . C 3 HOH A 88 488 23 HOH HOH . C 3 HOH A 89 489 111 HOH HOH . C 3 HOH A 90 490 80 HOH HOH . C 3 HOH A 91 491 154 HOH HOH . C 3 HOH A 92 492 35 HOH HOH . C 3 HOH A 93 493 34 HOH HOH . C 3 HOH A 94 494 16 HOH HOH . C 3 HOH A 95 495 26 HOH HOH . C 3 HOH A 96 496 62 HOH HOH . C 3 HOH A 97 497 70 HOH HOH . C 3 HOH A 98 498 100 HOH HOH . C 3 HOH A 99 499 123 HOH HOH . C 3 HOH A 100 500 63 HOH HOH . C 3 HOH A 101 501 96 HOH HOH . C 3 HOH A 102 502 168 HOH HOH . C 3 HOH A 103 503 94 HOH HOH . C 3 HOH A 104 504 11 HOH HOH . C 3 HOH A 105 505 50 HOH HOH . C 3 HOH A 106 506 120 HOH HOH . C 3 HOH A 107 507 18 HOH HOH . C 3 HOH A 108 508 82 HOH HOH . C 3 HOH A 109 509 55 HOH HOH . C 3 HOH A 110 510 119 HOH HOH . C 3 HOH A 111 511 102 HOH HOH . C 3 HOH A 112 512 6 HOH HOH . C 3 HOH A 113 513 46 HOH HOH . C 3 HOH A 114 514 48 HOH HOH . C 3 HOH A 115 515 173 HOH HOH . C 3 HOH A 116 516 132 HOH HOH . C 3 HOH A 117 517 12 HOH HOH . C 3 HOH A 118 518 13 HOH HOH . C 3 HOH A 119 519 147 HOH HOH . C 3 HOH A 120 520 20 HOH HOH . C 3 HOH A 121 521 97 HOH HOH . C 3 HOH A 122 522 170 HOH HOH . C 3 HOH A 123 523 42 HOH HOH . C 3 HOH A 124 524 112 HOH HOH . C 3 HOH A 125 525 28 HOH HOH . C 3 HOH A 126 526 135 HOH HOH . C 3 HOH A 127 527 164 HOH HOH . C 3 HOH A 128 528 61 HOH HOH . C 3 HOH A 129 529 53 HOH HOH . C 3 HOH A 130 530 175 HOH HOH . C 3 HOH A 131 531 64 HOH HOH . C 3 HOH A 132 532 117 HOH HOH . C 3 HOH A 133 533 149 HOH HOH . C 3 HOH A 134 534 118 HOH HOH . C 3 HOH A 135 535 180 HOH HOH . C 3 HOH A 136 536 179 HOH HOH . C 3 HOH A 137 537 160 HOH HOH . C 3 HOH A 138 538 104 HOH HOH . C 3 HOH A 139 539 107 HOH HOH . C 3 HOH A 140 540 148 HOH HOH . C 3 HOH A 141 541 72 HOH HOH . C 3 HOH A 142 542 76 HOH HOH . C 3 HOH A 143 543 159 HOH HOH . C 3 HOH A 144 544 126 HOH HOH . C 3 HOH A 145 545 172 HOH HOH . C 3 HOH A 146 546 121 HOH HOH . C 3 HOH A 147 547 133 HOH HOH . C 3 HOH A 148 548 124 HOH HOH . C 3 HOH A 149 549 182 HOH HOH . C 3 HOH A 150 550 83 HOH HOH . C 3 HOH A 151 551 139 HOH HOH . C 3 HOH A 152 552 84 HOH HOH . C 3 HOH A 153 553 141 HOH HOH . C 3 HOH A 154 554 137 HOH HOH . C 3 HOH A 155 555 101 HOH HOH . C 3 HOH A 156 556 157 HOH HOH . C 3 HOH A 157 557 166 HOH HOH . C 3 HOH A 158 558 140 HOH HOH . C 3 HOH A 159 559 165 HOH HOH . C 3 HOH A 160 560 66 HOH HOH . C 3 HOH A 161 561 122 HOH HOH . C 3 HOH A 162 562 161 HOH HOH . C 3 HOH A 163 563 151 HOH HOH . C 3 HOH A 164 564 40 HOH HOH . C 3 HOH A 165 565 138 HOH HOH . C 3 HOH A 166 566 44 HOH HOH . C 3 HOH A 167 567 143 HOH HOH . C 3 HOH A 168 568 174 HOH HOH . C 3 HOH A 169 569 93 HOH HOH . C 3 HOH A 170 570 136 HOH HOH . C 3 HOH A 171 571 88 HOH HOH . C 3 HOH A 172 572 75 HOH HOH . C 3 HOH A 173 573 73 HOH HOH . C 3 HOH A 174 574 156 HOH HOH . C 3 HOH A 175 575 171 HOH HOH . C 3 HOH A 176 576 144 HOH HOH . C 3 HOH A 177 577 108 HOH HOH . C 3 HOH A 178 578 155 HOH HOH . C 3 HOH A 179 579 114 HOH HOH . C 3 HOH A 180 580 131 HOH HOH . C 3 HOH A 181 581 145 HOH HOH . C 3 HOH A 182 582 142 HOH HOH . C 3 HOH A 183 583 129 HOH HOH . C 3 HOH A 184 584 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 EFW . . . B 2 -21.26 40.772 -8.372 1 14.39 ? C5 EFW 301 A 1 HETATM 2 C C6 EFW . . . B 2 -20.141 40.469 -9.121 1 16.55 ? C6 EFW 301 A 1 HETATM 3 C C16 EFW . . . B 2 -19.897 42.266 -7.127 1 18.08 ? C16 EFW 301 A 1 HETATM 4 C C4 EFW . . . B 2 -21.124 41.696 -7.354 1 18.4 ? C4 EFW 301 A 1 HETATM 5 C C7 EFW . . . B 2 -18.939 41.089 -8.835 1 19.53 ? C7 EFW 301 A 1 HETATM 6 C C2 EFW . . . B 2 -22.259 42.091 -6.508 1 20.41 ? C2 EFW 301 A 1 HETATM 7 C C10 EFW . . . B 2 -16.603 40.031 -11.486 1 21.54 ? C10 EFW 301 A 1 HETATM 8 C C11 EFW . . . B 2 -16.788 40.232 -12.976 1 21.3 ? C11 EFW 301 A 1 HETATM 9 C C14 EFW . . . B 2 -18.811 40.917 -11.81 1 16.79 ? C14 EFW 301 A 1 HETATM 10 C C9 EFW . . . B 2 -17.963 40.13 -10.842 1 18.73 ? C9 EFW 301 A 1 HETATM 11 C C12 EFW . . . B 2 -18.236 40.609 -13.174 1 19.55 ? C12 EFW 301 A 1 HETATM 12 N N15 EFW . . . B 2 -18.804 41.982 -7.842 1 17.12 ? N15 EFW 301 A 1 HETATM 13 N N1 EFW . . . B 2 -22.024 43.234 -5.779 1 20.92 ? N1 EFW 301 A 1 HETATM 14 N N8 EFW . . . B 2 -17.775 40.808 -9.571 1 13.96 ? N8 EFW 301 A 1 HETATM 15 O O3 EFW . . . B 2 -23.29 41.434 -6.477 1 19.92 ? O3 EFW 301 A 1 HETATM 16 O O13 EFW . . . B 2 -18.919 39.473 -13.673 1 18.8 ? O13 EFW 301 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #