data_4YQD # _model_server_result.job_id d3t8j6x4WVTkQpyhwrp3xg _model_server_result.datetime_utc '2024-10-11 00:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YQD # _exptl.entry_id 4YQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.51 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[(1-{2-[(3-methylbenzoyl)amino]ethyl}cyclohexyl)methyl]amino}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YQD _cell.length_a 94.376 _cell.length_b 94.376 _cell.length_c 177.996 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H30 N4 O2' _chem_comp.formula_weight 394.51 _chem_comp.id 4GZ _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[(1-{2-[(3-methylbenzoyl)amino]ethyl}cyclohexyl)methyl]amino}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 4GZ sing 1 n n C27 C28 4GZ sing 2 n n C26 C25 4GZ sing 3 n n C25 C13 4GZ sing 4 n n C28 C29 4GZ sing 5 n n C11 N10 4GZ sing 6 n n C11 C12 4GZ sing 7 n n O9 C8 4GZ doub 8 n n N10 C8 4GZ sing 9 n n C5 C4 4GZ doub 10 n y C5 C6 4GZ sing 11 n y C8 C6 4GZ sing 12 n n C29 C13 4GZ sing 13 n n C4 C3 4GZ sing 14 n y C6 C7 4GZ doub 15 n y C13 C12 4GZ sing 16 n n C13 C14 4GZ sing 17 n n C3 C2 4GZ doub 18 n y C7 C2 4GZ sing 19 n y C2 C1 4GZ sing 20 n n C14 N15 4GZ sing 21 n n N15 C16 4GZ sing 22 n n C17 C16 4GZ doub 23 n y C17 C18 4GZ sing 24 n y C16 N21 4GZ sing 25 n y C18 C19 4GZ doub 26 n y N21 C20 4GZ doub 27 n y C19 C20 4GZ sing 28 n y C19 C22 4GZ sing 29 n n O24 C22 4GZ doub 30 n n C22 N23 4GZ sing 31 n n C4 H1 4GZ sing 32 n n C5 H2 4GZ sing 33 n n C18 H3 4GZ sing 34 n n C3 H4 4GZ sing 35 n n C17 H5 4GZ sing 36 n n C7 H6 4GZ sing 37 n n C20 H7 4GZ sing 38 n n C27 H8 4GZ sing 39 n n C27 H9 4GZ sing 40 n n C26 H10 4GZ sing 41 n n C26 H11 4GZ sing 42 n n C28 H12 4GZ sing 43 n n C28 H13 4GZ sing 44 n n C25 H14 4GZ sing 45 n n C25 H15 4GZ sing 46 n n C29 H16 4GZ sing 47 n n C29 H17 4GZ sing 48 n n C1 H18 4GZ sing 49 n n C1 H19 4GZ sing 50 n n C1 H20 4GZ sing 51 n n C12 H21 4GZ sing 52 n n C12 H22 4GZ sing 53 n n C14 H23 4GZ sing 54 n n C14 H24 4GZ sing 55 n n C11 H25 4GZ sing 56 n n C11 H26 4GZ sing 57 n n N23 H27 4GZ sing 58 n n N23 H28 4GZ sing 59 n n N15 H29 4GZ sing 60 n n N10 H30 4GZ sing 61 n n # _atom_sites.entry_id 4YQD _atom_sites.fract_transf_matrix[1][1] 0.010596 _atom_sites.fract_transf_matrix[1][2] 0.006118 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4GZ A 1 301 1 4GZ UNL . C 3 HOH A 1 401 272 HOH HOH . C 3 HOH A 2 402 102 HOH HOH . C 3 HOH A 3 403 203 HOH HOH . C 3 HOH A 4 404 194 HOH HOH . C 3 HOH A 5 405 196 HOH HOH . C 3 HOH A 6 406 159 HOH HOH . C 3 HOH A 7 407 70 HOH HOH . C 3 HOH A 8 408 206 HOH HOH . C 3 HOH A 9 409 131 HOH HOH . C 3 HOH A 10 410 55 HOH HOH . C 3 HOH A 11 411 4 HOH HOH . C 3 HOH A 12 412 66 HOH HOH . C 3 HOH A 13 413 105 HOH HOH . C 3 HOH A 14 414 273 HOH HOH . C 3 HOH A 15 415 166 HOH HOH . C 3 HOH A 16 416 269 HOH HOH . C 3 HOH A 17 417 27 HOH HOH . C 3 HOH A 18 418 76 HOH HOH . C 3 HOH A 19 419 58 HOH HOH . C 3 HOH A 20 420 48 HOH HOH . C 3 HOH A 21 421 65 HOH HOH . C 3 HOH A 22 422 262 HOH HOH . C 3 HOH A 23 423 150 HOH HOH . C 3 HOH A 24 424 29 HOH HOH . C 3 HOH A 25 425 1 HOH HOH . C 3 HOH A 26 426 71 HOH HOH . C 3 HOH A 27 427 256 HOH HOH . C 3 HOH A 28 428 108 HOH HOH . C 3 HOH A 29 429 33 HOH HOH . C 3 HOH A 30 430 73 HOH HOH . C 3 HOH A 31 431 122 HOH HOH . C 3 HOH A 32 432 90 HOH HOH . C 3 HOH A 33 433 109 HOH HOH . C 3 HOH A 34 434 264 HOH HOH . C 3 HOH A 35 435 128 HOH HOH . C 3 HOH A 36 436 9 HOH HOH . C 3 HOH A 37 437 43 HOH HOH . C 3 HOH A 38 438 7 HOH HOH . C 3 HOH A 39 439 132 HOH HOH . C 3 HOH A 40 440 126 HOH HOH . C 3 HOH A 41 441 30 HOH HOH . C 3 HOH A 42 442 69 HOH HOH . C 3 HOH A 43 443 21 HOH HOH . C 3 HOH A 44 444 201 HOH HOH . C 3 HOH A 45 445 157 HOH HOH . C 3 HOH A 46 446 140 HOH HOH . C 3 HOH A 47 447 11 HOH HOH . C 3 HOH A 48 448 35 HOH HOH . C 3 HOH A 49 449 63 HOH HOH . C 3 HOH A 50 450 17 HOH HOH . C 3 HOH A 51 451 15 HOH HOH . C 3 HOH A 52 452 215 HOH HOH . C 3 HOH A 53 453 117 HOH HOH . C 3 HOH A 54 454 257 HOH HOH . C 3 HOH A 55 455 62 HOH HOH . C 3 HOH A 56 456 220 HOH HOH . C 3 HOH A 57 457 36 HOH HOH . C 3 HOH A 58 458 10 HOH HOH . C 3 HOH A 59 459 130 HOH HOH . C 3 HOH A 60 460 200 HOH HOH . C 3 HOH A 61 461 2 HOH HOH . C 3 HOH A 62 462 141 HOH HOH . C 3 HOH A 63 463 267 HOH HOH . C 3 HOH A 64 464 18 HOH HOH . C 3 HOH A 65 465 155 HOH HOH . C 3 HOH A 66 466 208 HOH HOH . C 3 HOH A 67 467 104 HOH HOH . C 3 HOH A 68 468 77 HOH HOH . C 3 HOH A 69 469 68 HOH HOH . C 3 HOH A 70 470 92 HOH HOH . C 3 HOH A 71 471 86 HOH HOH . C 3 HOH A 72 472 47 HOH HOH . C 3 HOH A 73 473 31 HOH HOH . C 3 HOH A 74 474 5 HOH HOH . C 3 HOH A 75 475 50 HOH HOH . C 3 HOH A 76 476 57 HOH HOH . C 3 HOH A 77 477 182 HOH HOH . C 3 HOH A 78 478 51 HOH HOH . C 3 HOH A 79 479 75 HOH HOH . C 3 HOH A 80 480 84 HOH HOH . C 3 HOH A 81 481 20 HOH HOH . C 3 HOH A 82 482 129 HOH HOH . C 3 HOH A 83 483 44 HOH HOH . C 3 HOH A 84 484 124 HOH HOH . C 3 HOH A 85 485 78 HOH HOH . C 3 HOH A 86 486 228 HOH HOH . C 3 HOH A 87 487 195 HOH HOH . C 3 HOH A 88 488 151 HOH HOH . C 3 HOH A 89 489 91 HOH HOH . C 3 HOH A 90 490 107 HOH HOH . C 3 HOH A 91 491 22 HOH HOH . C 3 HOH A 92 492 226 HOH HOH . C 3 HOH A 93 493 42 HOH HOH . C 3 HOH A 94 494 106 HOH HOH . C 3 HOH A 95 495 230 HOH HOH . C 3 HOH A 96 496 93 HOH HOH . C 3 HOH A 97 497 8 HOH HOH . C 3 HOH A 98 498 64 HOH HOH . C 3 HOH A 99 499 175 HOH HOH . C 3 HOH A 100 500 110 HOH HOH . C 3 HOH A 101 501 14 HOH HOH . C 3 HOH A 102 502 101 HOH HOH . C 3 HOH A 103 503 24 HOH HOH . C 3 HOH A 104 504 111 HOH HOH . C 3 HOH A 105 505 60 HOH HOH . C 3 HOH A 106 506 28 HOH HOH . C 3 HOH A 107 507 16 HOH HOH . C 3 HOH A 108 508 148 HOH HOH . C 3 HOH A 109 509 179 HOH HOH . C 3 HOH A 110 510 120 HOH HOH . C 3 HOH A 111 511 168 HOH HOH . C 3 HOH A 112 512 271 HOH HOH . C 3 HOH A 113 513 217 HOH HOH . C 3 HOH A 114 514 216 HOH HOH . C 3 HOH A 115 515 38 HOH HOH . C 3 HOH A 116 516 54 HOH HOH . C 3 HOH A 117 517 118 HOH HOH . C 3 HOH A 118 518 12 HOH HOH . C 3 HOH A 119 519 125 HOH HOH . C 3 HOH A 120 520 211 HOH HOH . C 3 HOH A 121 521 265 HOH HOH . C 3 HOH A 122 522 133 HOH HOH . C 3 HOH A 123 523 72 HOH HOH . C 3 HOH A 124 524 233 HOH HOH . C 3 HOH A 125 525 162 HOH HOH . C 3 HOH A 126 526 202 HOH HOH . C 3 HOH A 127 527 23 HOH HOH . C 3 HOH A 128 528 142 HOH HOH . C 3 HOH A 129 529 207 HOH HOH . C 3 HOH A 130 530 56 HOH HOH . C 3 HOH A 131 531 52 HOH HOH . C 3 HOH A 132 532 40 HOH HOH . C 3 HOH A 133 533 74 HOH HOH . C 3 HOH A 134 534 6 HOH HOH . C 3 HOH A 135 535 89 HOH HOH . C 3 HOH A 136 536 113 HOH HOH . C 3 HOH A 137 537 103 HOH HOH . C 3 HOH A 138 538 210 HOH HOH . C 3 HOH A 139 539 85 HOH HOH . C 3 HOH A 140 540 46 HOH HOH . C 3 HOH A 141 541 39 HOH HOH . C 3 HOH A 142 542 173 HOH HOH . C 3 HOH A 143 543 185 HOH HOH . C 3 HOH A 144 544 249 HOH HOH . C 3 HOH A 145 545 13 HOH HOH . C 3 HOH A 146 546 94 HOH HOH . C 3 HOH A 147 547 61 HOH HOH . C 3 HOH A 148 548 26 HOH HOH . C 3 HOH A 149 549 119 HOH HOH . C 3 HOH A 150 550 82 HOH HOH . C 3 HOH A 151 551 204 HOH HOH . C 3 HOH A 152 552 41 HOH HOH . C 3 HOH A 153 553 219 HOH HOH . C 3 HOH A 154 554 98 HOH HOH . C 3 HOH A 155 555 213 HOH HOH . C 3 HOH A 156 556 97 HOH HOH . C 3 HOH A 157 557 45 HOH HOH . C 3 HOH A 158 558 242 HOH HOH . C 3 HOH A 159 559 250 HOH HOH . C 3 HOH A 160 560 95 HOH HOH . C 3 HOH A 161 561 145 HOH HOH . C 3 HOH A 162 562 34 HOH HOH . C 3 HOH A 163 563 199 HOH HOH . C 3 HOH A 164 564 67 HOH HOH . C 3 HOH A 165 565 190 HOH HOH . C 3 HOH A 166 566 167 HOH HOH . C 3 HOH A 167 567 96 HOH HOH . C 3 HOH A 168 568 80 HOH HOH . C 3 HOH A 169 569 138 HOH HOH . C 3 HOH A 170 570 205 HOH HOH . C 3 HOH A 171 571 198 HOH HOH . C 3 HOH A 172 572 209 HOH HOH . C 3 HOH A 173 573 231 HOH HOH . C 3 HOH A 174 574 146 HOH HOH . C 3 HOH A 175 575 247 HOH HOH . C 3 HOH A 176 576 170 HOH HOH . C 3 HOH A 177 577 258 HOH HOH . C 3 HOH A 178 578 255 HOH HOH . C 3 HOH A 179 579 221 HOH HOH . C 3 HOH A 180 580 87 HOH HOH . C 3 HOH A 181 581 121 HOH HOH . C 3 HOH A 182 582 114 HOH HOH . C 3 HOH A 183 583 169 HOH HOH . C 3 HOH A 184 584 188 HOH HOH . C 3 HOH A 185 585 268 HOH HOH . C 3 HOH A 186 586 88 HOH HOH . C 3 HOH A 187 587 127 HOH HOH . C 3 HOH A 188 588 186 HOH HOH . C 3 HOH A 189 589 266 HOH HOH . C 3 HOH A 190 590 99 HOH HOH . C 3 HOH A 191 591 49 HOH HOH . C 3 HOH A 192 592 184 HOH HOH . C 3 HOH A 193 593 252 HOH HOH . C 3 HOH A 194 594 147 HOH HOH . C 3 HOH A 195 595 59 HOH HOH . C 3 HOH A 196 596 187 HOH HOH . C 3 HOH A 197 597 156 HOH HOH . C 3 HOH A 198 598 177 HOH HOH . C 3 HOH A 199 599 79 HOH HOH . C 3 HOH A 200 600 270 HOH HOH . C 3 HOH A 201 601 37 HOH HOH . C 3 HOH A 202 602 189 HOH HOH . C 3 HOH A 203 603 172 HOH HOH . C 3 HOH A 204 604 160 HOH HOH . C 3 HOH A 205 605 25 HOH HOH . C 3 HOH A 206 606 191 HOH HOH . C 3 HOH A 207 607 259 HOH HOH . C 3 HOH A 208 608 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4GZ . . . B 2 -16.438 49.074 -12.045 1 35.21 ? C4 4GZ 301 A 1 HETATM 2 C C5 4GZ . . . B 2 -16.58 47.74 -12.358 1 28.64 ? C5 4GZ 301 A 1 HETATM 3 C C18 4GZ . . . B 2 -21.184 40.823 -8.38 1 16.72 ? C18 4GZ 301 A 1 HETATM 4 C C3 4GZ . . . B 2 -17.454 49.747 -11.403 1 32.13 ? C3 4GZ 301 A 1 HETATM 5 C C17 4GZ . . . B 2 -20.026 40.522 -9.078 1 18 ? C17 4GZ 301 A 1 HETATM 6 C C7 4GZ . . . B 2 -18.767 47.755 -11.379 1 20.71 ? C7 4GZ 301 A 1 HETATM 7 C C20 4GZ . . . B 2 -19.935 42.415 -7.156 1 18.72 ? C20 4GZ 301 A 1 HETATM 8 C C6 4GZ . . . B 2 -17.747 47.093 -12.019 1 23.15 ? C6 4GZ 301 A 1 HETATM 9 C C19 4GZ . . . B 2 -21.137 41.795 -7.402 1 15.83 ? C19 4GZ 301 A 1 HETATM 10 C C2 4GZ . . . B 2 -18.618 49.089 -11.071 1 25.22 ? C2 4GZ 301 A 1 HETATM 11 C C16 4GZ . . . B 2 -18.853 41.194 -8.776 1 19.9 ? C16 4GZ 301 A 1 HETATM 12 C C8 4GZ . . . B 2 -17.94 45.669 -12.34 1 20.19 ? C8 4GZ 301 A 1 HETATM 13 C C22 4GZ . . . B 2 -22.347 42.171 -6.653 1 18.08 ? C22 4GZ 301 A 1 HETATM 14 C C27 4GZ . . . B 2 -19.04 39.602 -13.994 1 22.92 ? C27 4GZ 301 A 1 HETATM 15 C C26 4GZ . . . B 2 -17.615 39.354 -13.551 1 23.07 ? C26 4GZ 301 A 1 HETATM 16 C C28 4GZ . . . B 2 -19.809 40.157 -12.811 1 21.12 ? C28 4GZ 301 A 1 HETATM 17 C C25 4GZ . . . B 2 -16.975 40.657 -13.109 1 20.95 ? C25 4GZ 301 A 1 HETATM 18 C C29 4GZ . . . B 2 -19.163 41.442 -12.318 1 20.13 ? C29 4GZ 301 A 1 HETATM 19 C C13 4GZ . . . B 2 -17.712 41.259 -11.931 1 19.63 ? C13 4GZ 301 A 1 HETATM 20 C C1 4GZ . . . B 2 -19.714 49.813 -10.373 1 31.85 ? C1 4GZ 301 A 1 HETATM 21 C C12 4GZ . . . B 2 -17.105 42.605 -11.581 1 20.08 ? C12 4GZ 301 A 1 HETATM 22 C C14 4GZ . . . B 2 -17.646 40.299 -10.742 1 18.77 ? C14 4GZ 301 A 1 HETATM 23 C C11 4GZ . . . B 2 -16.912 43.494 -12.81 1 23.31 ? C11 4GZ 301 A 1 HETATM 24 N N21 4GZ . . . B 2 -18.802 42.129 -7.813 1 16.38 ? N21 4GZ 301 A 1 HETATM 25 N N23 4GZ . . . B 2 -22.221 43.345 -5.951 1 20.2 ? N23 4GZ 301 A 1 HETATM 26 N N15 4GZ . . . B 2 -17.62 40.949 -9.436 1 18.86 ? N15 4GZ 301 A 1 HETATM 27 N N10 4GZ . . . B 2 -16.804 44.901 -12.441 1 21.3 ? N10 4GZ 301 A 1 HETATM 28 O O9 4GZ . . . B 2 -19.088 45.272 -12.494 1 24.14 ? O9 4GZ 301 A 1 HETATM 29 O O24 4GZ . . . B 2 -23.369 41.499 -6.696 1 18.65 ? O24 4GZ 301 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #