data_4YQE
#
_model_server_result.job_id            CEZBGZRkZWwj9l61INgXlw 
_model_server_result.datetime_utc      '2024-11-24 13:40:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yqe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    4YQE 
#
_exptl.entry_id    4YQE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              108.095 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-benzoquinone 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YQE 
_cell.length_a            61.179 
_cell.length_b            61.179 
_cell.length_c            169.992 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YQE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 9 A SER 9 1_555 A N MHO 10 A MHO 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MHO 10 A MHO 10 1_555 A N TYR 11 A TYR 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 B C SER 9 B SER 9 1_555 B N MHO 10 B MHO 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C MHO 10 B MHO 10 1_555 B N TYR 11 B TYR 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C6 H4 O2' 
_chem_comp.formula_weight    108.095 
_chem_comp.id                PLQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-benzoquinone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'cyclohexa-2,5-diene-1,4-dione;QUINONE RING OF THE PLASTOQUINONE 9' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C5 PLQ doub 321 n n 
C5 C6 PLQ sing 322 n n 
C5 C4 PLQ sing 323 n n 
C6 C1 PLQ doub 324 n n 
C6 H6 PLQ sing 325 n n 
C4 C3 PLQ doub 326 n n 
C4 H4 PLQ sing 327 n n 
C3 C2 PLQ sing 328 n n 
C3 H3 PLQ sing 329 n n 
C2 O2 PLQ doub 330 n n 
C2 C1 PLQ sing 331 n n 
C1 H1 PLQ sing 332 n n 
#
_atom_sites.entry_id                     4YQE 
_atom_sites.fract_transf_matrix[1][1]    0.016345 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005883 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 201 201 FMN FMN . 
D 3 PLQ A 1 202 202 PLQ PLQ . 
E 3 PLQ B 1 201 202 PLQ PLQ . 
F 2 FMN B 1 202 201 FMN FMN . 
G 4 HOH A 1 301 170 HOH HOH . 
G 4 HOH A 2 302 123 HOH HOH . 
G 4 HOH A 3 303 99 HOH HOH . 
G 4 HOH A 4 304 177 HOH HOH . 
G 4 HOH A 5 305 48 HOH HOH . 
G 4 HOH A 6 306 217 HOH HOH . 
G 4 HOH A 7 307 182 HOH HOH . 
G 4 HOH A 8 308 59 HOH HOH . 
G 4 HOH A 9 309 62 HOH HOH . 
G 4 HOH A 10 310 166 HOH HOH . 
G 4 HOH A 11 311 60 HOH HOH . 
G 4 HOH A 12 312 14 HOH HOH . 
G 4 HOH A 13 313 96 HOH HOH . 
G 4 HOH A 14 314 220 HOH HOH . 
G 4 HOH A 15 315 155 HOH HOH . 
G 4 HOH A 16 316 145 HOH HOH . 
G 4 HOH A 17 317 20 HOH HOH . 
G 4 HOH A 18 318 102 HOH HOH . 
G 4 HOH A 19 319 90 HOH HOH . 
G 4 HOH A 20 320 163 HOH HOH . 
G 4 HOH A 21 321 19 HOH HOH . 
G 4 HOH A 22 322 178 HOH HOH . 
G 4 HOH A 23 323 115 HOH HOH . 
G 4 HOH A 24 324 7 HOH HOH . 
G 4 HOH A 25 325 38 HOH HOH . 
G 4 HOH A 26 326 58 HOH HOH . 
G 4 HOH A 27 327 35 HOH HOH . 
G 4 HOH A 28 328 82 HOH HOH . 
G 4 HOH A 29 329 17 HOH HOH . 
G 4 HOH A 30 330 70 HOH HOH . 
G 4 HOH A 31 331 72 HOH HOH . 
G 4 HOH A 32 332 85 HOH HOH . 
G 4 HOH A 33 333 213 HOH HOH . 
G 4 HOH A 34 334 161 HOH HOH . 
G 4 HOH A 35 335 210 HOH HOH . 
G 4 HOH A 36 336 110 HOH HOH . 
G 4 HOH A 37 337 8 HOH HOH . 
G 4 HOH A 38 338 46 HOH HOH . 
G 4 HOH A 39 339 148 HOH HOH . 
G 4 HOH A 40 340 97 HOH HOH . 
G 4 HOH A 41 341 73 HOH HOH . 
G 4 HOH A 42 342 114 HOH HOH . 
G 4 HOH A 43 343 140 HOH HOH . 
G 4 HOH A 44 344 104 HOH HOH . 
G 4 HOH A 45 345 136 HOH HOH . 
G 4 HOH A 46 346 193 HOH HOH . 
G 4 HOH A 47 347 6 HOH HOH . 
G 4 HOH A 48 348 175 HOH HOH . 
G 4 HOH A 49 349 146 HOH HOH . 
G 4 HOH A 50 350 189 HOH HOH . 
G 4 HOH A 51 351 51 HOH HOH . 
G 4 HOH A 52 352 25 HOH HOH . 
G 4 HOH A 53 353 186 HOH HOH . 
G 4 HOH A 54 354 211 HOH HOH . 
G 4 HOH A 55 355 12 HOH HOH . 
G 4 HOH A 56 356 79 HOH HOH . 
G 4 HOH A 57 357 83 HOH HOH . 
G 4 HOH A 58 358 1 HOH HOH . 
G 4 HOH A 59 359 190 HOH HOH . 
G 4 HOH A 60 360 64 HOH HOH . 
G 4 HOH A 61 361 171 HOH HOH . 
G 4 HOH A 62 362 66 HOH HOH . 
G 4 HOH A 63 363 74 HOH HOH . 
G 4 HOH A 64 364 154 HOH HOH . 
G 4 HOH A 65 365 179 HOH HOH . 
G 4 HOH A 66 366 3 HOH HOH . 
G 4 HOH A 67 367 47 HOH HOH . 
G 4 HOH A 68 368 23 HOH HOH . 
G 4 HOH A 69 369 100 HOH HOH . 
G 4 HOH A 70 370 16 HOH HOH . 
G 4 HOH A 71 371 10 HOH HOH . 
G 4 HOH A 72 372 135 HOH HOH . 
G 4 HOH A 73 373 216 HOH HOH . 
G 4 HOH A 74 374 194 HOH HOH . 
G 4 HOH A 75 375 199 HOH HOH . 
G 4 HOH A 76 376 107 HOH HOH . 
G 4 HOH A 77 377 55 HOH HOH . 
G 4 HOH A 78 378 53 HOH HOH . 
G 4 HOH A 79 379 88 HOH HOH . 
G 4 HOH A 80 380 198 HOH HOH . 
G 4 HOH A 81 381 75 HOH HOH . 
G 4 HOH A 82 382 153 HOH HOH . 
G 4 HOH A 83 383 39 HOH HOH . 
G 4 HOH A 84 384 196 HOH HOH . 
G 4 HOH A 85 385 24 HOH HOH . 
G 4 HOH A 86 386 50 HOH HOH . 
G 4 HOH A 87 387 109 HOH HOH . 
G 4 HOH A 88 388 165 HOH HOH . 
G 4 HOH A 89 389 188 HOH HOH . 
G 4 HOH A 90 390 204 HOH HOH . 
G 4 HOH A 91 391 180 HOH HOH . 
G 4 HOH A 92 392 76 HOH HOH . 
G 4 HOH A 93 393 41 HOH HOH . 
G 4 HOH A 94 394 223 HOH HOH . 
G 4 HOH A 95 395 141 HOH HOH . 
G 4 HOH A 96 396 94 HOH HOH . 
G 4 HOH A 97 397 108 HOH HOH . 
G 4 HOH A 98 398 152 HOH HOH . 
G 4 HOH A 99 399 144 HOH HOH . 
G 4 HOH A 100 400 137 HOH HOH . 
G 4 HOH A 101 401 201 HOH HOH . 
G 4 HOH A 102 402 208 HOH HOH . 
G 4 HOH A 103 403 119 HOH HOH . 
G 4 HOH A 104 404 197 HOH HOH . 
G 4 HOH A 105 405 106 HOH HOH . 
G 4 HOH A 106 406 121 HOH HOH . 
G 4 HOH A 107 407 200 HOH HOH . 
G 4 HOH A 108 408 111 HOH HOH . 
G 4 HOH A 109 409 173 HOH HOH . 
G 4 HOH A 110 410 195 HOH HOH . 
G 4 HOH A 111 411 143 HOH HOH . 
H 4 HOH B 1 301 95 HOH HOH . 
H 4 HOH B 2 302 131 HOH HOH . 
H 4 HOH B 3 303 87 HOH HOH . 
H 4 HOH B 4 304 32 HOH HOH . 
H 4 HOH B 5 305 68 HOH HOH . 
H 4 HOH B 6 306 86 HOH HOH . 
H 4 HOH B 7 307 209 HOH HOH . 
H 4 HOH B 8 308 128 HOH HOH . 
H 4 HOH B 9 309 162 HOH HOH . 
H 4 HOH B 10 310 132 HOH HOH . 
H 4 HOH B 11 311 89 HOH HOH . 
H 4 HOH B 12 312 80 HOH HOH . 
H 4 HOH B 13 313 93 HOH HOH . 
H 4 HOH B 14 314 205 HOH HOH . 
H 4 HOH B 15 315 167 HOH HOH . 
H 4 HOH B 16 316 138 HOH HOH . 
H 4 HOH B 17 317 202 HOH HOH . 
H 4 HOH B 18 318 151 HOH HOH . 
H 4 HOH B 19 319 160 HOH HOH . 
H 4 HOH B 20 320 69 HOH HOH . 
H 4 HOH B 21 321 187 HOH HOH . 
H 4 HOH B 22 322 113 HOH HOH . 
H 4 HOH B 23 323 98 HOH HOH . 
H 4 HOH B 24 324 78 HOH HOH . 
H 4 HOH B 25 325 219 HOH HOH . 
H 4 HOH B 26 326 212 HOH HOH . 
H 4 HOH B 27 327 206 HOH HOH . 
H 4 HOH B 28 328 169 HOH HOH . 
H 4 HOH B 29 329 133 HOH HOH . 
H 4 HOH B 30 330 124 HOH HOH . 
H 4 HOH B 31 331 120 HOH HOH . 
H 4 HOH B 32 332 42 HOH HOH . 
H 4 HOH B 33 333 150 HOH HOH . 
H 4 HOH B 34 334 34 HOH HOH . 
H 4 HOH B 35 335 116 HOH HOH . 
H 4 HOH B 36 336 84 HOH HOH . 
H 4 HOH B 37 337 63 HOH HOH . 
H 4 HOH B 38 338 103 HOH HOH . 
H 4 HOH B 39 339 2 HOH HOH . 
H 4 HOH B 40 340 92 HOH HOH . 
H 4 HOH B 41 341 125 HOH HOH . 
H 4 HOH B 42 342 4 HOH HOH . 
H 4 HOH B 43 343 65 HOH HOH . 
H 4 HOH B 44 344 27 HOH HOH . 
H 4 HOH B 45 345 130 HOH HOH . 
H 4 HOH B 46 346 224 HOH HOH . 
H 4 HOH B 47 347 18 HOH HOH . 
H 4 HOH B 48 348 56 HOH HOH . 
H 4 HOH B 49 349 37 HOH HOH . 
H 4 HOH B 50 350 44 HOH HOH . 
H 4 HOH B 51 351 33 HOH HOH . 
H 4 HOH B 52 352 9 HOH HOH . 
H 4 HOH B 53 353 214 HOH HOH . 
H 4 HOH B 54 354 43 HOH HOH . 
H 4 HOH B 55 355 61 HOH HOH . 
H 4 HOH B 56 356 77 HOH HOH . 
H 4 HOH B 57 357 191 HOH HOH . 
H 4 HOH B 58 358 30 HOH HOH . 
H 4 HOH B 59 359 67 HOH HOH . 
H 4 HOH B 60 360 222 HOH HOH . 
H 4 HOH B 61 361 185 HOH HOH . 
H 4 HOH B 62 362 15 HOH HOH . 
H 4 HOH B 63 363 49 HOH HOH . 
H 4 HOH B 64 364 26 HOH HOH . 
H 4 HOH B 65 365 36 HOH HOH . 
H 4 HOH B 66 366 159 HOH HOH . 
H 4 HOH B 67 367 101 HOH HOH . 
H 4 HOH B 68 368 71 HOH HOH . 
H 4 HOH B 69 369 112 HOH HOH . 
H 4 HOH B 70 370 11 HOH HOH . 
H 4 HOH B 71 371 57 HOH HOH . 
H 4 HOH B 72 372 29 HOH HOH . 
H 4 HOH B 73 373 157 HOH HOH . 
H 4 HOH B 74 374 31 HOH HOH . 
H 4 HOH B 75 375 122 HOH HOH . 
H 4 HOH B 76 376 215 HOH HOH . 
H 4 HOH B 77 377 13 HOH HOH . 
H 4 HOH B 78 378 5 HOH HOH . 
H 4 HOH B 79 379 184 HOH HOH . 
H 4 HOH B 80 380 168 HOH HOH . 
H 4 HOH B 81 381 129 HOH HOH . 
H 4 HOH B 82 382 176 HOH HOH . 
H 4 HOH B 83 383 21 HOH HOH . 
H 4 HOH B 84 384 81 HOH HOH . 
H 4 HOH B 85 385 183 HOH HOH . 
H 4 HOH B 86 386 52 HOH HOH . 
H 4 HOH B 87 387 218 HOH HOH . 
H 4 HOH B 88 388 28 HOH HOH . 
H 4 HOH B 89 389 54 HOH HOH . 
H 4 HOH B 90 390 105 HOH HOH . 
H 4 HOH B 91 391 45 HOH HOH . 
H 4 HOH B 92 392 22 HOH HOH . 
H 4 HOH B 93 393 126 HOH HOH . 
H 4 HOH B 94 394 127 HOH HOH . 
H 4 HOH B 95 395 156 HOH HOH . 
H 4 HOH B 96 396 221 HOH HOH . 
H 4 HOH B 97 397 139 HOH HOH . 
H 4 HOH B 98 398 158 HOH HOH . 
H 4 HOH B 99 399 207 HOH HOH . 
H 4 HOH B 100 400 181 HOH HOH . 
H 4 HOH B 101 401 117 HOH HOH . 
H 4 HOH B 102 402 147 HOH HOH . 
H 4 HOH B 103 403 91 HOH HOH . 
H 4 HOH B 104 404 174 HOH HOH . 
H 4 HOH B 105 405 40 HOH HOH . 
H 4 HOH B 106 406 203 HOH HOH . 
H 4 HOH B 107 407 192 HOH HOH . 
H 4 HOH B 108 408 149 HOH HOH . 
H 4 HOH B 109 409 118 HOH HOH . 
H 4 HOH B 110 410 164 HOH HOH . 
H 4 HOH B 111 411 142 HOH HOH . 
H 4 HOH B 112 412 134 HOH HOH . 
H 4 HOH B 113 413 172 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 PLQ . . . E 3 -34.87 -35.271 -14.933 0.6 27.01 ? O5 PLQ 201 B 1 
HETATM 2 C C5 PLQ . . . E 3 -34.658 -35.018 -16.149 0.6 28.86 ? C5 PLQ 201 B 1 
HETATM 3 C C6 PLQ . . . E 3 -33.942 -35.869 -17.008 0.6 30.84 ? C6 PLQ 201 B 1 
HETATM 4 C C4 PLQ . . . E 3 -35.138 -33.825 -16.662 0.6 29.97 ? C4 PLQ 201 B 1 
HETATM 5 C C3 PLQ . . . E 3 -34.917 -33.476 -17.985 0.6 36.43 ? C3 PLQ 201 B 1 
HETATM 6 C C2 PLQ . . . E 3 -34.21 -34.321 -18.821 0.6 31.33 ? C2 PLQ 201 B 1 
HETATM 7 O O2 PLQ . . . E 3 -34.033 -33.967 -20.003 0.6 42.71 ? O2 PLQ 201 B 1 
HETATM 8 C C1 PLQ . . . E 3 -33.715 -35.533 -18.335 0.6 30.4 ? C1 PLQ 201 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           8 
#