data_4YQF
#
_model_server_result.job_id            JRVoRas752fB9zpLMjOsKA 
_model_server_result.datetime_utc      '2024-11-04 20:16:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yqf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4YQF 
#
_exptl.entry_id    4YQF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.81 
_cell.angle_gamma         90 
_cell.entry_id            4YQF 
_cell.length_a            57.04 
_cell.length_b            77.523 
_cell.length_c            77.909 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YQF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 37 B SER 37 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc2 A OG1 THR 64 B THR 64 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc3 C O1B GDP . B GDP 301 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc4 C O3B GDP . B GDP 301 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc5 D MG MG . B MG 302 1_555 G O HOH . B HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc6 D MG MG . B MG 302 1_555 G O HOH . B HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc7 B OG SER 37 A SER 37 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc8 B OG1 THR 64 A THR 64 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc9 E O2B GDP . A GDP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc10 F MG MG . A MG 302 1_555 H O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc11 F MG MG . A MG 302 1_555 H O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc12 F MG MG . A MG 302 1_555 H O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YQF 
_atom_sites.fract_transf_matrix[1][1]    0.017532 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004966 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01334 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GDP B 1 301 3851 GDP GDP . 
D 3 MG B 1 302 2 MG MG . 
E 2 GDP A 1 301 3850 GDP GDP . 
F 3 MG A 1 302 1 MG MG . 
G 4 HOH B 1 401 61 HOH HOH . 
G 4 HOH B 2 402 23 HOH HOH . 
G 4 HOH B 3 403 27 HOH HOH . 
G 4 HOH B 4 404 66 HOH HOH . 
G 4 HOH B 5 405 78 HOH HOH . 
G 4 HOH B 6 406 2 HOH HOH . 
G 4 HOH B 7 407 4 HOH HOH . 
G 4 HOH B 8 408 5 HOH HOH . 
G 4 HOH B 9 409 7 HOH HOH . 
G 4 HOH B 10 410 10 HOH HOH . 
G 4 HOH B 11 411 11 HOH HOH . 
G 4 HOH B 12 412 14 HOH HOH . 
G 4 HOH B 13 413 16 HOH HOH . 
G 4 HOH B 14 414 17 HOH HOH . 
G 4 HOH B 15 415 18 HOH HOH . 
G 4 HOH B 16 416 20 HOH HOH . 
G 4 HOH B 17 417 26 HOH HOH . 
G 4 HOH B 18 418 28 HOH HOH . 
G 4 HOH B 19 419 29 HOH HOH . 
G 4 HOH B 20 420 30 HOH HOH . 
G 4 HOH B 21 421 31 HOH HOH . 
G 4 HOH B 22 422 34 HOH HOH . 
G 4 HOH B 23 423 38 HOH HOH . 
G 4 HOH B 24 424 39 HOH HOH . 
G 4 HOH B 25 425 41 HOH HOH . 
G 4 HOH B 26 426 52 HOH HOH . 
G 4 HOH B 27 427 53 HOH HOH . 
G 4 HOH B 28 428 54 HOH HOH . 
G 4 HOH B 29 429 57 HOH HOH . 
G 4 HOH B 30 430 58 HOH HOH . 
G 4 HOH B 31 431 59 HOH HOH . 
G 4 HOH B 32 432 63 HOH HOH . 
G 4 HOH B 33 433 65 HOH HOH . 
G 4 HOH B 34 434 67 HOH HOH . 
G 4 HOH B 35 435 68 HOH HOH . 
G 4 HOH B 36 436 69 HOH HOH . 
G 4 HOH B 37 437 70 HOH HOH . 
G 4 HOH B 38 438 72 HOH HOH . 
G 4 HOH B 39 439 73 HOH HOH . 
G 4 HOH B 40 440 75 HOH HOH . 
G 4 HOH B 41 441 85 HOH HOH . 
G 4 HOH B 42 442 86 HOH HOH . 
H 4 HOH A 1 401 62 HOH HOH . 
H 4 HOH A 2 402 6 HOH HOH . 
H 4 HOH A 3 403 76 HOH HOH . 
H 4 HOH A 4 404 37 HOH HOH . 
H 4 HOH A 5 405 19 HOH HOH . 
H 4 HOH A 6 406 15 HOH HOH . 
H 4 HOH A 7 407 74 HOH HOH . 
H 4 HOH A 8 408 1 HOH HOH . 
H 4 HOH A 9 409 3 HOH HOH . 
H 4 HOH A 10 410 8 HOH HOH . 
H 4 HOH A 11 411 9 HOH HOH . 
H 4 HOH A 12 412 12 HOH HOH . 
H 4 HOH A 13 413 13 HOH HOH . 
H 4 HOH A 14 414 21 HOH HOH . 
H 4 HOH A 15 415 22 HOH HOH . 
H 4 HOH A 16 416 24 HOH HOH . 
H 4 HOH A 17 417 25 HOH HOH . 
H 4 HOH A 18 418 32 HOH HOH . 
H 4 HOH A 19 419 33 HOH HOH . 
H 4 HOH A 20 420 35 HOH HOH . 
H 4 HOH A 21 421 40 HOH HOH . 
H 4 HOH A 22 422 42 HOH HOH . 
H 4 HOH A 23 423 44 HOH HOH . 
H 4 HOH A 24 424 45 HOH HOH . 
H 4 HOH A 25 425 46 HOH HOH . 
H 4 HOH A 26 426 47 HOH HOH . 
H 4 HOH A 27 427 48 HOH HOH . 
H 4 HOH A 28 428 50 HOH HOH . 
H 4 HOH A 29 429 51 HOH HOH . 
H 4 HOH A 30 430 55 HOH HOH . 
H 4 HOH A 31 431 56 HOH HOH . 
H 4 HOH A 32 432 60 HOH HOH . 
H 4 HOH A 33 433 64 HOH HOH . 
H 4 HOH A 34 434 71 HOH HOH . 
H 4 HOH A 35 435 77 HOH HOH . 
H 4 HOH A 36 436 80 HOH HOH . 
H 4 HOH A 37 437 81 HOH HOH . 
H 4 HOH A 38 438 82 HOH HOH . 
H 4 HOH A 39 439 83 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               33.113 
_atom_site.Cartn_y               -21.335 
_atom_site.Cartn_z               -45.553 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.68 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#